Rh3AG103200

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017685
Physical Location & Seq
Reverse (-)
8561707 .. 8563675
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG103200.1

Sequence Viewer

Length: 444 bp
ATGGCTTCGTTGTCCAAGGATGATGAAGACCTATTTTCCTTCGCAAGCCAATTGTCTCCACTTGATTTGAGTGGAAGTGAGTATGTTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGAAGAGGGTATGTCCAACAATCTTAATACCACTTCTTGCAACACTGAAGATAGAAGTGGTATTGCTAGTTCTTCTTCAAAACCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTCGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGCATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGTACATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

4.65

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 89 - 136 4.4e-21 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 231, 339
AfaI GTAC 1 cut(s) 435
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 243, 400
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 60, 337
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 426
AvaI CYCGRG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 326
BccI CCATC 4 cut(s) 97, 134, 155, 256
BcoDI GTCTC 2 cut(s) 60, 337
BfaI CTAG 2 cut(s) 231, 416
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 15, 133
BseDI CCNNGG 2 cut(s) 15, 133
BseGI GGATG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 60, 337
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 2 cut(s) 372, 426
BsnI GGCC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 309
BspANI GGCC 1 cut(s) 385
BspTI CTTAAG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 15, 133
BssT1I CCWWGG 2 cut(s) 15, 133
Bst6I CTCTTC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 60, 337
BstNSI RCATGY 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 434
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 5, 48, 257, 317, 385
CviKI_1 RGCY 5 cut(s) 5, 48, 257, 317, 385
CviQI GTAC 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 15, 133
Eco57I CTGAAG 2 cut(s) 231, 339
Eco88I CYCGRG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 15, 133
ErhI CCWWGG 2 cut(s) 15, 133
FaeI CATG 1 cut(s) 301
FaiI YATR 5 cut(s) 84, 176, 281, 299, 438
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 231, 416
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 385
Hin1II CATG 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 204
Hsp92II CATG 1 cut(s) 301
LpnPI CCDG 1 cut(s) 416
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 231, 416
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 7 cut(s) 38, 179, 224, 228, 231, 332, 431
MfeI CAATTG 1 cut(s) 50
MluCI AATT 2 cut(s) 50, 107
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 116, 189, 348
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 347
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 2 cut(s) 372, 426
NlaIII CATG 1 cut(s) 301
NspI RCATGY 1 cut(s) 301
PaeR7I CTCGAG 1 cut(s) 309
PctI GAATGC 2 cut(s) 372, 426
PdmI GAANNNNTTC 1 cut(s) 426
PkrI GCNGC 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 3 cut(s) 116, 189, 348
SatI GCNGC 1 cut(s) 315
SetI ASST 6 cut(s) 33, 319, 359, 417, 435, 443
Sfr274I CTCGAG 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 309, 347
SmoI CTYRAG 2 cut(s) 309, 347
Sse9I AATT 2 cut(s) 50, 107
SspMI CTAG 2 cut(s) 231, 416
StyI CCWWGG 2 cut(s) 15, 133
TaqI TCGA 2 cut(s) 310, 361
TasI AATT 2 cut(s) 50, 107
Tru1I TTAA 3 cut(s) 116, 189, 348
Tru9I TTAA 3 cut(s) 116, 189, 348
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 39, 120, 341, 365
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 347
XceI RCATGY 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 2 cut(s) 231, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.