Rw3G008780

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0017685
Physical Location & Seq
Reverse (-)
8107815 .. 8109260
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008780.1

Sequence Viewer

Length: 591 bp
ATGGCTTCGTTGTCCAAGGATGATGAAGACCTATTTTCCTTCGCAAGCCAATTGTCTCCACTTGATTTGAGAGAGTATGTTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTGCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGAAGAGGGTATGTCCAACAATCTTAATACCACTTCTTGCAATACTGAAGATAGAAGTGGTATTGCTAGTTCTTCTTCAAAACCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTGCAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGTATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGAGTTTTGGAAGAATGAAGAAGAGCAGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCCGATTTGCAACTCGAGGAAAAGACGAAGCGGCTCAGGCATGCTTATTTTAAGGCCAAAAGTTGTGGAAATTATTCTAAACACCGACGGTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

196

Amino Acids

22.47

Weight (kDa)

5.29

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 87 - 134 5.3e-21 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 523
AcuI CTGAAG 2 cut(s) 225, 333
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 2 cut(s) 237, 394
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 60, 331
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 2 cut(s) 377, 546
ApeKI GCWGC 2 cut(s) 305, 308
Asp700I GAANNNNTTC 2 cut(s) 420, 565
AvaI CYCGRG 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 317, 320
BccI CCATC 4 cut(s) 91, 128, 149, 250
BcoDI GTCTC 2 cut(s) 60, 331
BfaI CTAG 2 cut(s) 225, 410
BfmI CTRYAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 341
BisI GCNGC 3 cut(s) 306, 309, 524
BlsI GCNGC 3 cut(s) 307, 310, 525
BmeT110I CYCGRG 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 15, 127
BseDI CCNNGG 2 cut(s) 15, 127
BseGI GGATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 541
BseXI GCAGC 2 cut(s) 317, 320
BshFI GGCC 2 cut(s) 379, 548
BsiHKCI CYCGRG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 60, 331
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 2 cut(s) 379, 548
BsoBI CYCGRG 1 cut(s) 506
BspACI CCGC 1 cut(s) 523
BspANI GGCC 2 cut(s) 379, 548
BspCNI CTCAG 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 307
BspQI GCTCTTC 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 15, 127
BssT1I CCWWGG 2 cut(s) 15, 127
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 156, 441
BstAFI CTTAAG 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 46, 534
BstDEI CTNAG 1 cut(s) 527
BstF5I GGATG 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 60, 331
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNSI RCATGY 2 cut(s) 295, 536
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 317, 320
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 379, 548
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 46, 534
CaiI CAGNNNCTG 1 cut(s) 311
CspCI CAANNNNNGTGG 4 cut(s) 48, 83, 538, 573
CviAII CATG 2 cut(s) 292, 533
CviJI RGCY 7 cut(s) 5, 48, 251, 311, 379, 526, 548
CviKI_1 RGCY 7 cut(s) 5, 48, 251, 311, 379, 526, 548
DdeI CTNAG 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 156, 441
EarI CTCTTC 2 cut(s) 156, 441
Eco130I CCWWGG 2 cut(s) 15, 127
Eco57I CTGAAG 2 cut(s) 225, 333
Eco88I CYCGRG 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 15, 127
ErhI CCWWGG 2 cut(s) 15, 127
FaeI CATG 2 cut(s) 295, 536
FaiI YATR 5 cut(s) 78, 170, 275, 293, 534
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 291, 532
Fnu4HI GCNGC 3 cut(s) 306, 309, 524
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 306, 309, 524
FspBI CTAG 2 cut(s) 225, 410
GluI GCNGC 3 cut(s) 306, 309, 524
HaeIII GGCC 2 cut(s) 379, 548
Hin1II CATG 2 cut(s) 295, 536
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 3 cut(s) 356, 425, 494
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4V TGCA 4 cut(s) 198, 305, 502, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 1 cut(s) 527
Hsp92II CATG 2 cut(s) 295, 536
LguI GCTCTTC 1 cut(s) 441
LpnPI CCDG 3 cut(s) 410, 437, 514
Lsp1109I GCAGC 2 cut(s) 317, 320
MaeI CTAG 2 cut(s) 225, 410
MaeIII GTNAC 1 cut(s) 331
MfeI CAATTG 1 cut(s) 50
MluCI AATT 3 cut(s) 50, 101, 562
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 157, 465, 502
MroXI GAANNNNTTC 2 cut(s) 420, 565
MseI TTAA 4 cut(s) 110, 183, 342, 543
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 341
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 529
NlaIII CATG 2 cut(s) 295, 536
NspI RCATGY 2 cut(s) 295, 536
PaeI GCATGC 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 441
PctI GAATGC 1 cut(s) 420
PdmI GAANNNNTTC 2 cut(s) 420, 565
PkrI GCNGC 3 cut(s) 307, 310, 525
PspXI VCTCGAGB 1 cut(s) 506
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 4 cut(s) 110, 183, 342, 543
SatI GCNGC 3 cut(s) 306, 309, 524
SetI ASST 4 cut(s) 33, 313, 353, 411
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 341, 506
SmoI CTYRAG 2 cut(s) 341, 506
SphI GCATGC 1 cut(s) 536
Sse9I AATT 3 cut(s) 50, 101, 562
SsiI CCGC 1 cut(s) 523
SspMI CTAG 2 cut(s) 225, 410
StyI CCWWGG 2 cut(s) 15, 127
TaaI ACNGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 355, 507
TasI AATT 3 cut(s) 50, 101, 562
TauI GCSGC 1 cut(s) 526
Tru1I TTAA 4 cut(s) 110, 183, 342, 543
Tru9I TTAA 4 cut(s) 110, 183, 342, 543
TseI GCWGC 2 cut(s) 305, 308
TspDTI ATGAA 5 cut(s) 39, 114, 335, 359, 456
Vha464I CTTAAG 1 cut(s) 341
XceI RCATGY 2 cut(s) 295, 536
XhoI CTCGAG 1 cut(s) 506
XmnI GAANNNNTTC 2 cut(s) 420, 565
XspI CTAG 2 cut(s) 225, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.