Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Forward (+)

6617882 .. 6619081

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGTACTATTTCCCAGCTATCTCAGATGGTTCCAACTTCTCTTCTTCCTCAGTGATCACCAACACCAACAACATGAACATCAATGGCGGGGGCTACAAAGACAGGATGAAGAAAGGTGCTAGTGATCATGATCAGAAGGTCAAGAGCAGCAAAGTGAAGCTTTCAACAGACCCGCAAAGCGTGGCGGCGAGGGAGAGGAGGCACCGCATCAGCGAAAGGTTCAAGATCCTGCAGAGCCTGGTCCCCGGTGGAAACAAGATGGACACTGTGTCCATGCTGGAGGAAGCCATTCAGTACGTCAAGTTCTTGAAGAATCAGATACGACTTCACCAGACCATGATCAACTTTGCGAGAGATGATGCTTGTCATCAGTACTACGATCATGACGCTGCAACTGGAAATGTGTTCCAGCTTCCGATTCATCACGGCCATCCAGTCAATCGTCCTCAACAGCAGGCTTTGTGCTATGAACAGAATAATTTTGTGGGCACTAGTAGCTCTGTGCAGCCATCAGTTCCAGTAATGCCGGACTATTCTTGCTTCCAAGGTCAAGAGGCCGCGCCTGAGATTGATGCCTATCTGAAGTACTACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

200

Amino Acids

22.49

Weight (kDa)

7.75

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	64 - 105	8.9e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	66 - 108	3.7e-11	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	563
AciI	CCGC	5 cut(s)	90, 176, 188, 208, 561
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	430
AfaI	GTAC	4 cut(s)	8, 299, 377, 590
AgsI	TTSAA	3 cut(s)	168, 226, 313
AhdI	GACNNNNNGTC	1 cut(s)	271
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	20, 163, 415, 501, 597
AluI	AGCT	5 cut(s)	20, 163, 415, 501, 597
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	2 cut(s)	430, 558
ApeKI	GCWGC	3 cut(s)	150, 392, 508
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	52, 323
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	162, 379, 520
BccI	CCATC	4 cut(s)	23, 256, 441, 520
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	4 cut(s)	57, 127, 133, 342
BcnI	CCSGG	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	3 cut(s)	123, 495, 598
BfmI	CTRYAG	2 cut(s)	233, 592
BisI	GCNGC	5 cut(s)	151, 189, 393, 509, 561
BlsI	GCNGC	5 cut(s)	152, 190, 394, 510, 562
BmcAI	AGTACT	3 cut(s)	8, 377, 590
Bme1390I	CCNGG	2 cut(s)	242, 249
Bme18I	GGWCC	1 cut(s)	244
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	3 cut(s)	34, 206, 246
BmrFI	CCNGG	2 cut(s)	242, 249
BmsI	GCATC	3 cut(s)	219, 352, 565
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	249
BsaBI	GATNNNNATC	2 cut(s)	132, 579
BsaJI	CCNNGG	2 cut(s)	247, 547
Bse1I	ACTGG	3 cut(s)	403, 437, 521
Bse8I	GATNNNNATC	2 cut(s)	132, 579
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	247, 547
BseGI	GGATG	2 cut(s)	114, 433
BseJI	GATNNNNATC	2 cut(s)	132, 579
BseMII	CTCAG	3 cut(s)	39, 66, 558
BseNI	ACTGG	3 cut(s)	403, 437, 521
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	162, 379, 520
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	2 cut(s)	432, 560
BshNI	GGYRCC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	249, 530
BslFI	GGGAC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	432, 560
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
BspACI	CCGC	5 cut(s)	90, 176, 188, 208, 561
BspANI	GGCC	2 cut(s)	432, 560
BspCNI	CTCAG	3 cut(s)	38, 65, 559
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	2 cut(s)	130, 385
BspLI	GGNNCC	3 cut(s)	34, 206, 246
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	403, 437, 521
BssECI	CCNNGG	2 cut(s)	247, 547
BssMI	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	25, 52, 567
BstF5I	GGATG	2 cut(s)	114, 433
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	6 cut(s)	60, 130, 136, 231, 345, 385
BstMBI	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	240, 247
BstSFI	CTRYAG	2 cut(s)	233, 592
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	3 cut(s)	162, 379, 520
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	432, 560
BtsCI	GGATG	2 cut(s)	114, 433
BtsIMutI	CAGTG	2 cut(s)	60, 267
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	1 cut(s)	241
CciI	TCATGA	2 cut(s)	130, 385
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	4 cut(s)	7, 298, 376, 589
CviAII	CATG	5 cut(s)	76, 131, 277, 340, 386
CviQI	GTAC	4 cut(s)	7, 298, 376, 589
DdeI	CTNAG	3 cut(s)	25, 52, 567
DpnI	GATC	6 cut(s)	59, 129, 135, 230, 344, 384
DpnII	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	49
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	5 cut(s)	79, 134, 280, 343, 389
FaiI	YATR	6 cut(s)	77, 132, 278, 341, 387, 471
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	5 cut(s)	75, 130, 276, 339, 385
FauI	CCCGC	2 cut(s)	83, 183
FbaI	TGATCA	4 cut(s)	57, 127, 133, 342
Fnu4HI	GCNGC	5 cut(s)	151, 189, 393, 509, 561
FokI	GGATG	2 cut(s)	121, 420
Fsp4HI	GCNGC	5 cut(s)	151, 189, 393, 509, 561
FspBI	CTAG	3 cut(s)	123, 495, 598
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	5 cut(s)	151, 189, 393, 509, 561
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	432, 560
HapII	CCGG	2 cut(s)	249, 530
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	79, 134, 280, 343, 389
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	316, 421
HpaII	CCGG	2 cut(s)	249, 530
HphI	GGTGA	2 cut(s)	52, 323
Hpy188I	TCNGA	5 cut(s)	28, 138, 321, 420, 585
Hpy188III	TCNNGA	6 cut(s)	131, 145, 226, 310, 386, 554
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	235, 395, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	3 cut(s)	25, 52, 567
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	79, 134, 280, 343, 389
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	4 cut(s)	57, 127, 133, 342
Kzo9I	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
Lsp1109I	GCAGC	3 cut(s)	162, 379, 520
LweI	GCATC	3 cut(s)	219, 352, 565
MaeI	CTAG	3 cut(s)	123, 495, 598
MaeII	ACGT	1 cut(s)	300
MalI	GATC	6 cut(s)	59, 129, 135, 230, 344, 384
MboI	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
MboII	GAAGA	4 cut(s)	36, 39, 124, 325
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	7 cut(s)	61, 186, 192, 195, 277, 459, 550
MroXI	GAANNNNTTC	1 cut(s)	291
MspI	CCGG	2 cut(s)	249, 530
MspR9I	CCNGG	2 cut(s)	242, 249
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	498
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
NlaIII	CATG	5 cut(s)	79, 134, 280, 343, 389
NlaIV	GGNNCC	3 cut(s)	34, 206, 246
PagI	TCATGA	2 cut(s)	130, 385
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	316, 421
PkrI	GCNGC	5 cut(s)	152, 190, 394, 510, 562
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	34, 206, 246
PspPI	GGNCC	1 cut(s)	244
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstI	CTGCAG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	4 cut(s)	8, 299, 377, 590
RsaNI	GTAC	4 cut(s)	7, 298, 376, 589
SatI	GCNGC	5 cut(s)	151, 189, 393, 509, 561
Sau3AI	GATC	6 cut(s)	57, 127, 133, 228, 342, 382
Sau96I	GGNCC	1 cut(s)	244
ScaI	AGTACT	3 cut(s)	8, 377, 590
ScrFI	CCNGG	2 cut(s)	242, 249
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	3 cut(s)	219, 352, 565
SfcI	CTRYAG	2 cut(s)	233, 592
SinI	GGWCC	1 cut(s)	244
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	5 cut(s)	90, 176, 188, 208, 561
SspMI	CTAG	3 cut(s)	123, 495, 598
StyD4I	CCNGG	2 cut(s)	240, 247
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	303
TasI	AATT	1 cut(s)	481
TatI	WGTACW	3 cut(s)	6, 375, 588
TauI	GCSGC	2 cut(s)	191, 563
TfiI	GAWTC	2 cut(s)	316, 421
TscAI	CASTG	2 cut(s)	60, 274
TseI	GCWGC	3 cut(s)	150, 392, 508
TspDTI	ATGAA	4 cut(s)	92, 125, 413, 486
TspRI	CASTG	2 cut(s)	60, 274
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	3 cut(s)	123, 495, 598
ZrmI	AGTACT	3 cut(s)	8, 377, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.