Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365921.1

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Forward (+)

56 .. 538

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365921.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgaagaagagtactagtggtaatgatcagaagagcaagaacaaagtgaagctgtcgacagacccacaaagcgtggcggcgagggagaggaggcaccgcatcagcgaaaggttcaagatcctgcagagcctggtccccggtggaaccaagctggacactgtgtccatgctggaggaagccattcagtacgtgaagttcttgaagagtcagatatggcttcaccagaccatgatcaactttgcgggagatgatgatactcagtactacgatcacgaccctacatctggaaatgtgttccagcttccggttcatcacggccatccagttgatcctcctcatcagcaggctttgtgctatggacagaatagtttcgtgggtactagttcggtgcagccatcggttccagtaatgccggaatattcttgcttccaaggtcaagaagctacgcctaacattgaagcctatatgaagtattatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

160

Amino Acids

18.09

Weight (kDa)

7.05

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	3 cut(s)	77, 97, 242
AclWI	GGATC	2 cut(s)	112, 323
AcoI	YGGCCR	1 cut(s)	316
AfaI	GTAC	4 cut(s)	13, 188, 263, 379
AfiI	CCNNNNNNNGG	2 cut(s)	284, 304
AgsI	TTSAA	3 cut(s)	115, 202, 458
AhdI	GACNNNNNGTC	1 cut(s)	160
AhlI	ACTAGT	2 cut(s)	14, 380
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	52, 151, 301, 443, 480
AluI	AGCT	5 cut(s)	52, 151, 301, 443, 480
AlwI	GGATC	2 cut(s)	112, 323
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	391
Asp700I	GAANNNNTTC	2 cut(s)	180, 368
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	327, 403
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	2 cut(s)	25, 231
BcnI	CCSGG	1 cut(s)	138
BcuI	ACTAGT	2 cut(s)	14, 380
BfaI	CTAG	3 cut(s)	15, 381, 481
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	78, 392
BlsI	GCNGC	2 cut(s)	79, 393
BmcAI	AGTACT	2 cut(s)	13, 263
Bme1390I	CCNGG	2 cut(s)	131, 138
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	4 cut(s)	95, 135, 145, 402
BmrFI	CCNGG	2 cut(s)	131, 138
BmsI	GCATC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	136, 430
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 304
Bse1I	ACTGG	2 cut(s)	323, 404
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	136, 430
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	284, 304
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	323, 404
BseRI	GAGGAG	2 cut(s)	103, 324
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	138, 305, 413
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	284, 304
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	25, 117, 231, 268, 328
BspACI	CCGC	3 cut(s)	77, 97, 242
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	4 cut(s)	95, 135, 145, 402
BspMAI	CTGCAG	1 cut(s)	126
BspPI	GGATC	2 cut(s)	112, 323
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	323, 404
BssECI	CCNNGG	2 cut(s)	136, 430
BssMI	GATC	5 cut(s)	25, 117, 231, 268, 328
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	3 cut(s)	2, 26, 197
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	5 cut(s)	28, 120, 234, 271, 331
BstMBI	GATC	5 cut(s)	25, 117, 231, 268, 328
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	129, 136
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	12, 187, 262, 378
CviAII	CATG	2 cut(s)	166, 229
CviQI	GTAC	4 cut(s)	12, 187, 262, 378
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	5 cut(s)	27, 119, 233, 270, 330
DpnII	GATC	5 cut(s)	25, 117, 231, 268, 328
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	2, 26, 197
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	3 cut(s)	2, 26, 197
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	169, 232
FaiI	YATR	7 cut(s)	167, 214, 230, 357, 465, 467, 477
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	165, 228
FauI	CCCGC	1 cut(s)	235
FbaI	TGATCA	2 cut(s)	25, 231
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	78, 392
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	78, 392
FspBI	CTAG	3 cut(s)	15, 381, 481
GluI	GCNGC	2 cut(s)	78, 392
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	3 cut(s)	138, 305, 413
Hin1II	CATG	2 cut(s)	169, 232
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	3 cut(s)	138, 305, 413
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	30, 210
Hpy188III	TCNNGA	5 cut(s)	115, 199, 272, 285, 437
Hpy8I	GTNNAC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	124, 391
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	169, 232
Ksp22I	TGATCA	2 cut(s)	25, 231
Kzo9I	GATC	5 cut(s)	25, 117, 231, 268, 328
LguI	GCTCTTC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	3 cut(s)	15, 381, 481
MaeII	ACGT	1 cut(s)	189
MalI	GATC	5 cut(s)	27, 119, 233, 270, 330
MboI	GATC	5 cut(s)	25, 117, 231, 268, 328
MboII	GAAGA	4 cut(s)	16, 19, 43, 214
MflI	RGATCY	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	6 cut(s)	75, 81, 84, 166, 342, 345
MroXI	GAANNNNTTC	2 cut(s)	180, 368
MspI	CCGG	3 cut(s)	138, 305, 413
MspR9I	CCNGG	2 cut(s)	131, 138
MvaI	CCWGG	1 cut(s)	131
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	5 cut(s)	25, 117, 231, 268, 328
NlaIII	CATG	2 cut(s)	169, 232
NlaIV	GGNNCC	4 cut(s)	95, 135, 145, 402
PciSI	GCTCTTC	1 cut(s)	26
PdmI	GAANNNNTTC	2 cut(s)	180, 368
PkrI	GCNGC	2 cut(s)	79, 393
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	4 cut(s)	95, 135, 145, 402
PspPI	GGNCC	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	4 cut(s)	13, 188, 263, 379
RsaNI	GTAC	4 cut(s)	12, 187, 262, 378
SalI	GTCGAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	2 cut(s)	78, 392
Sau3AI	GATC	5 cut(s)	25, 117, 231, 268, 328
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	2 cut(s)	13, 263
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	131, 138
SetI	ASST	8 cut(s)	54, 113, 153, 192, 303, 436, 445, 482
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	133
SpeI	ACTAGT	2 cut(s)	14, 380
SsiI	CCGC	3 cut(s)	77, 97, 242
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	3 cut(s)	15, 381, 481
StyD4I	CCNGG	2 cut(s)	129, 136
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	56
TatI	WGTACW	2 cut(s)	11, 261
TauI	GCSGC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	17, 299, 482
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	180, 368
XspI	CTAG	3 cut(s)	15, 381, 481
ZrmI	AGTACT	2 cut(s)	13, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.