Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Reverse (-)

39212630 .. 39213878

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGTACTATTTCCCAGCTAGCTCAGATGGTTCCAATTTCTCTTCTTCCTCAGTGATCACCAACAACATCAACATCAATGGCGGGCGCAACAAAGACAAAATGAAGAAGAGTAGTTGTAATGATCAGAAGAGCAAGAACAAAGTGAAGTTGTCGACAGACCCACAAAGCGTGGCGGCGAGGGAGAGGAGGCACCGCATCAGCGAAAGGTTCAAGATCCTGCAGAGCCTGGTCCCCGGTGGAACCAAGCTGGACACTGTGTCCATGCTGGAGGAAGCCATTCAGTACGTGAAGTTCTTGAAGAGTCAGATATGGCTTCACCAGACCATGATCAACTTTGCGGGAGATGATGATAATCAGTACTACGATCACGACCCTACATCTGGAAATGTGTTCCAGCTTCCGGTTCATCACGGCCATCCAGTTGATCCTCCTCATCAGCAGGCTTTGTGCTATGGACAGAATAGTTTCGTGGGTACTAGTTCGGTGCAGCCATCGGTTCCAGTAATGCCGGAATATTCTTGCTTCCAAGGTCAAGAAGCTACGCCTAACATTGAAGCCTATATGAAGTATTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

193

Amino Acids

21.75

Weight (kDa)

7.05

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	60 - 101	7.7e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	62 - 103	8e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	4 cut(s)	84, 176, 196, 341
AclWI	GGATC	2 cut(s)	211, 422
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	4 cut(s)	8, 287, 362, 478
AfiI	CCNNNNNNNGG	2 cut(s)	383, 403
AgsI	TTSAA	3 cut(s)	214, 301, 557
AhdI	GACNNNNNGTC	1 cut(s)	259
AhlI	ACTAGT	1 cut(s)	479
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	6 cut(s)	20, 24, 250, 400, 542, 579
AluI	AGCT	6 cut(s)	20, 24, 250, 400, 542, 579
AlwI	GGATC	2 cut(s)	211, 422
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	490
Asp700I	GAANNNNTTC	2 cut(s)	279, 467
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	52, 311
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	3 cut(s)	23, 426, 502
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	3 cut(s)	57, 124, 330
BcnI	CCSGG	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	3 cut(s)	21, 480, 580
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	177, 491
BlsI	GCNGC	2 cut(s)	178, 492
BmcAI	AGTACT	2 cut(s)	8, 362
Bme1390I	CCNGG	2 cut(s)	230, 237
Bme18I	GGWCC	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	5 cut(s)	34, 194, 234, 244, 501
BmrFI	CCNGG	2 cut(s)	230, 237
BmsI	GCATC	1 cut(s)	207
BmtI	GCTAGC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	235, 529
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 403
Bse1I	ACTGG	2 cut(s)	422, 503
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	235, 529
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	383, 403
BseMII	CTCAG	2 cut(s)	39, 66
BseNI	ACTGG	2 cut(s)	422, 503
BseRI	GAGGAG	2 cut(s)	202, 423
BseXI	GCAGC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	509
BshFI	GGCC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	237, 404, 512
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	383, 403
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	417
Bsp143I	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
BspACI	CCGC	4 cut(s)	84, 176, 196, 341
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	2 cut(s)	38, 65
BspLI	GGNNCC	5 cut(s)	34, 194, 234, 244, 501
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	211, 422
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	422, 503
BssECI	CCNNGG	2 cut(s)	235, 529
BssMI	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	49, 104, 125, 296
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	22, 86, 444
BstDEI	CTNAG	2 cut(s)	25, 52
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	6 cut(s)	60, 127, 219, 333, 370, 430
BstMBI	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	228, 235
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	60, 255
Cac8I	GCNNGC	3 cut(s)	22, 86, 444
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	7, 286, 361, 477
CviAII	CATG	2 cut(s)	265, 328
CviQI	GTAC	4 cut(s)	7, 286, 361, 477
DdeI	CTNAG	2 cut(s)	25, 52
DpnI	GATC	6 cut(s)	59, 126, 218, 332, 369, 429
DpnII	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
DriI	GACNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	4 cut(s)	49, 104, 125, 296
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	4 cut(s)	49, 104, 125, 296
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	2 cut(s)	268, 331
FaiI	YATR	7 cut(s)	266, 313, 329, 456, 564, 566, 576
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	264, 327
FauI	CCCGC	2 cut(s)	77, 334
FbaI	TGATCA	3 cut(s)	57, 124, 330
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	177, 491
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	177, 491
FspBI	CTAG	3 cut(s)	21, 480, 580
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	177, 491
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	3 cut(s)	237, 404, 512
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	268, 331
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	3 cut(s)	237, 404, 512
HphI	GGTGA	2 cut(s)	52, 311
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	28, 129, 309
Hpy188III	TCNNGA	5 cut(s)	214, 298, 371, 384, 536
Hpy8I	GTNNAC	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	223, 490
HpyF3I	CTNAG	2 cut(s)	25, 52
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	268, 331
HspAI	GCGC	1 cut(s)	88
Ksp22I	TGATCA	3 cut(s)	57, 124, 330
Kzo9I	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
LguI	GCTCTTC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	21, 480, 580
MaeII	ACGT	1 cut(s)	288
MalI	GATC	6 cut(s)	59, 126, 218, 332, 369, 429
MboI	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
MboII	GAAGA	6 cut(s)	36, 39, 118, 121, 142, 313
MflI	RGATCY	1 cut(s)	216
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	61, 174, 180, 183, 265, 441, 444
MroXI	GAANNNNTTC	2 cut(s)	279, 467
MspI	CCGG	3 cut(s)	237, 404, 512
MspR9I	CCNGG	2 cut(s)	230, 237
MvaI	CCWGG	1 cut(s)	230
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	268, 331
NlaIV	GGNNCC	5 cut(s)	34, 194, 234, 244, 501
PciSI	GCTCTTC	1 cut(s)	125
PdmI	GAANNNNTTC	2 cut(s)	279, 467
PkrI	GCNGC	2 cut(s)	178, 492
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	5 cut(s)	34, 194, 234, 244, 501
PspPI	GGNCC	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	278, 310
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	4 cut(s)	8, 287, 362, 478
RsaNI	GTAC	4 cut(s)	7, 286, 361, 477
SalI	GTCGAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	177, 491
Sau3AI	GATC	6 cut(s)	57, 124, 216, 330, 367, 427
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	2 cut(s)	8, 362
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	230, 237
SetI	ASST	9 cut(s)	22, 26, 212, 252, 291, 402, 535, 544, 581
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	232
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	84, 176, 196, 341
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	3 cut(s)	21, 480, 580
StyD4I	CCNGG	2 cut(s)	228, 235
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	37
TatI	WGTACW	2 cut(s)	6, 360
TauI	GCSGC	1 cut(s)	179
TscAI	CASTG	2 cut(s)	60, 262
TseI	GCWGC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	119, 398, 581
TspRI	CASTG	2 cut(s)	60, 262
VpaK11BI	GGWCC	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	2 cut(s)	279, 467
XspI	CTAG	3 cut(s)	21, 480, 580
ZrmI	AGTACT	2 cut(s)	8, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.