Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Reverse (-)

25473206 .. 25473781

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGACTACTTCACTGCTACTAATGACTCTAGCTCAAATAATTTCTCTAAATCGTCTTCTTCCGTGACAAAAAACAATCGTGGTGGTGGGAAGAACAAAAGCAAAGGAGTGAGGCTGTCCACTGATCCACAGAGCGTGGCTGCTCGCGAGAGGAGGCACAGGATCAGTGACCGGTTCAAGATCTTGCAGAGCTTGGTTCCTGGTGGGACCAAGCTTGACACTGTGTCCATGCTGGAGGAGGCTATCCACTATGTGAAGTTCCTCAAGACTCAGATATGGCTTCACCAGAGCATGATCAACTCTGTGGACGATCACCATGATCCATCACCGTCCATGTTGATGGACATTCCAGCTCATCGTCATGGTCTTCATCCAACTGGGTGCTTTGATCAGCTTCCCCCGCAGCATCATCAGCAGACTCATGATTTGTTCGCTCACAGCAATTTCGTTAGTGCTGCTGGTTCAGTGCAACCACCATCGCCAGCGGTTAATATTCCAATAATGCCGGAGTATAATTGCTTCCAAGGTCAAGAAACCCTTGCCAATATTGAAGCCTATATGAAATATTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

192

Amino Acids

21.36

Weight (kDa)

7.89

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	48 - 89	1.1e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	50 - 92	3.2e-09	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	401, 485
AclWI	GGATC	3 cut(s)	119, 170, 314
AdeI	CACNNNGTG	1 cut(s)	253
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	178, 551
AhdI	GACNNNNNGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	6 cut(s)	33, 192, 214, 353, 394, 573
AluI	AGCT	6 cut(s)	33, 192, 214, 353, 394, 573
AlwI	GGATC	3 cut(s)	119, 170, 314
ApeKI	GCWGC	3 cut(s)	140, 403, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	275, 305, 318
AvaII	GGWCC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BbsI	GAAGAC	2 cut(s)	48, 359
BbvI	GCAGC	3 cut(s)	127, 415, 442
BccI	CCATC	3 cut(s)	331, 334, 484
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	2 cut(s)	294, 388
BfaI	CTAG	2 cut(s)	30, 574
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	141, 404, 456
BlsI	GCNGC	3 cut(s)	142, 405, 457
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	198, 208
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	48, 359
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	523
BsaWI	WCCGGW	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	166, 251
BseXI	GCAGC	3 cut(s)	127, 415, 442
Bsh1236I	CGCG	1 cut(s)	147
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	172, 506
BslFI	GGGAC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	2 cut(s)	401, 485
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	198, 208
BspPI	GGATC	3 cut(s)	119, 170, 314
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	223, 330
BstC8I	GCNNGC	2 cut(s)	145, 483
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	7 cut(s)	127, 165, 183, 297, 313, 322, 391
BstMBI	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 412
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	127, 415, 442
BstV2I	GAAGAC	2 cut(s)	48, 359
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	5 cut(s)	12, 120, 172, 219, 471
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	145, 483
CciI	TCATGA	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	207
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	6 cut(s)	229, 292, 317, 334, 362, 422
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	7 cut(s)	126, 164, 182, 296, 312, 321, 390
DpnII	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
DraIII	CACNNNGTG	1 cut(s)	253
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1105I	GACNNNNNGTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	6 cut(s)	232, 295, 320, 337, 365, 425
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	6 cut(s)	228, 291, 316, 333, 361, 421
FauI	CCCGC	1 cut(s)	408
FbaI	TGATCA	2 cut(s)	294, 388
Fnu4HI	GCNGC	3 cut(s)	141, 404, 456
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	141, 404, 456
FspBI	CTAG	2 cut(s)	30, 574
GluI	GCNGC	3 cut(s)	141, 404, 456
GsuI	CTGGAG	1 cut(s)	254
HapII	CCGG	2 cut(s)	172, 506
Hin1II	CATG	6 cut(s)	232, 295, 320, 337, 365, 425
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	26, 268, 418
HpaII	CCGG	2 cut(s)	172, 506
HphI	GGTGA	3 cut(s)	275, 305, 318
Hpy166II	GTNNAC	2 cut(s)	120, 307
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	5 cut(s)	146, 178, 265, 422, 530
Hpy8I	GTNNAC	2 cut(s)	120, 307
HpyCH4III	ACNGT	2 cut(s)	223, 330
HpyCH4V	TGCA	2 cut(s)	187, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 412
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	232, 295, 320, 337, 365, 425
Ksp22I	TGATCA	2 cut(s)	294, 388
Kzo9I	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
Lsp1109I	GCAGC	3 cut(s)	127, 415, 442
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	30, 574
MaeIII	GTNAC	2 cut(s)	64, 167
MalI	GATC	7 cut(s)	126, 164, 182, 296, 312, 321, 390
MboI	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
MboII	GAAGA	4 cut(s)	48, 51, 103, 359
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	3 cut(s)	40, 442, 514
MlyI	GAGTC	3 cut(s)	20, 262, 412
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	6 cut(s)	105, 144, 147, 229, 232, 272
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	2 cut(s)	338, 360
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	172, 506
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	400, 412
NdeII	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
NlaIII	CATG	6 cut(s)	232, 295, 320, 337, 365, 425
NlaIV	GGNNCC	2 cut(s)	198, 208
NmuCI	GTSAC	2 cut(s)	64, 167
NruI	TCGCGA	1 cut(s)	147
PagI	TCATGA	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	142, 405, 457
PleI	GAGTC	3 cut(s)	20, 262, 412
PpsI	GAGTC	3 cut(s)	20, 262, 412
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	198, 208
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	338, 360
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	3 cut(s)	141, 404, 456
Sau3AI	GATC	7 cut(s)	124, 162, 180, 294, 310, 319, 388
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	3 cut(s)	20, 262, 412
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	7 cut(s)	35, 194, 216, 355, 396, 529, 575
SfaNI	GCATC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	2 cut(s)	338, 360
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	40, 442, 514
SsiI	CCGC	2 cut(s)	401, 485
SspI	AATATT	3 cut(s)	493, 547, 566
SspMI	CTAG	2 cut(s)	30, 574
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	223, 330
TasI	AATT	3 cut(s)	40, 442, 514
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	5 cut(s)	19, 127, 172, 226, 471
TseFI	GTSAC	2 cut(s)	64, 167
TseI	GCWGC	3 cut(s)	140, 403, 455
Tsp45I	GTSAC	2 cut(s)	64, 167
TspDTI	ATGAA	2 cut(s)	359, 575
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	5 cut(s)	19, 127, 172, 226, 471
VpaK11BI	GGWCC	1 cut(s)	207
XspI	CTAG	2 cut(s)	30, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.