Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Reverse (-)

17383669 .. 17384040

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTGGAGGAGGCCATCCACTATGTGAAGTTCCTCAAGACTCAGATATGGCTTCACCAGACCATGATCAACTTTGCGGACGATTACCATGATCCCTTGTCGTCATTATCACCACCGTCCATGTTGATGGATATTCCAGCTCATGATCATGATCTTCATCCAATTGGGTTTCTTGATCATGATCTTTGTCCAACTGGGTGCTTTGATCATCTTTCTCACCAGCTTCATCAGCAGACTCATGATGTGTACGCTCACAGCGATTTCGTTAGTGCTGCTGCTTCAGTGCAACCACCGTCACCACCAGCAGTTAATATTCCAATAATGCCCGAGTACAATTGCTTCCAAAGGTCAAGGAACAATTGGCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

5.44

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	2 cut(s)	248, 332
AluBI	AGCT	2 cut(s)	140, 223
AluI	AGCT	2 cut(s)	140, 223
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	272, 275
AsuHPI	GGTGA	4 cut(s)	47, 102, 209, 288
AvaI	CYCGRG	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BbvI	GCAGC	2 cut(s)	259, 262
BccI	CCATC	2 cut(s)	23, 121
BclI	TGATCA	4 cut(s)	66, 145, 175, 205
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
BmeT110I	CYCGRG	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	20
BsaBI	GATNNNNATC	3 cut(s)	150, 156, 180
Bse1I	ACTGG	1 cut(s)	199
Bse8I	GATNNNNATC	3 cut(s)	150, 156, 180
BseGI	GGATG	2 cut(s)	15, 157
BseJI	GATNNNNATC	3 cut(s)	150, 156, 180
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	259, 262
BshFI	GGCC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	326
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	4 cut(s)	142, 148, 178, 238
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
Bst4CI	ACNGT	2 cut(s)	117, 294
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	15, 157
BstKTI	GATC	7 cut(s)	69, 94, 148, 154, 178, 184, 208
BstMBI	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	259, 262
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	15, 157
BtsIMutI	CAGTG	1 cut(s)	288
CciI	TCATGA	4 cut(s)	142, 148, 178, 238
Csp6I	GTAC	2 cut(s)	247, 331
CviAII	CATG	7 cut(s)	64, 89, 121, 143, 149, 179, 239
CviJI	RGCY	4 cut(s)	14, 52, 140, 223
CviKI_1	RGCY	4 cut(s)	14, 52, 140, 223
CviQI	GTAC	2 cut(s)	247, 331
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	7 cut(s)	68, 93, 147, 153, 177, 183, 207
DpnII	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
DraIII	CACNNNGTG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	326
FaeI	CATG	7 cut(s)	67, 92, 124, 146, 152, 182, 242
FaiI	YATR	9 cut(s)	24, 49, 65, 90, 122, 144, 150, 180, 240
FatI	CATG	7 cut(s)	63, 88, 120, 142, 148, 178, 238
FbaI	TGATCA	4 cut(s)	66, 145, 175, 205
Fnu4HI	GCNGC	2 cut(s)	273, 276
FokI	GGATG	2 cut(s)	2, 144
Fsp4HI	GCNGC	2 cut(s)	273, 276
GluI	GCNGC	2 cut(s)	273, 276
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	67, 92, 124, 146, 152, 182, 242
HinfI	GANTC	2 cut(s)	40, 235
HphI	GGTGA	4 cut(s)	47, 102, 209, 288
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	6 cut(s)	37, 143, 149, 173, 179, 239
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	117, 294
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	67, 92, 124, 146, 152, 182, 242
Ksp22I	TGATCA	4 cut(s)	66, 145, 175, 205
Kzo9I	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
LpnPI	CCDG	5 cut(s)	71, 150, 180, 233, 315
Lsp1109I	GCAGC	2 cut(s)	259, 262
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	7 cut(s)	68, 93, 147, 153, 177, 183, 207
MboI	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
MboII	GAAGA	1 cut(s)	146
MfeI	CAATTG	3 cut(s)	162, 334, 358
MluCI	AATT	3 cut(s)	162, 334, 358
MlyI	GAGTC	2 cut(s)	34, 229
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	4, 44
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	125, 147
MunI	CAATTG	3 cut(s)	162, 334, 358
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
NlaIII	CATG	7 cut(s)	67, 92, 124, 146, 152, 182, 242
NmuCI	GTSAC	1 cut(s)	294
PagI	TCATGA	4 cut(s)	142, 148, 178, 238
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	274, 277
PleI	GAGTC	2 cut(s)	34, 229
PpsI	GAGTC	2 cut(s)	34, 229
RsaI	GTAC	2 cut(s)	248, 332
RsaNI	GTAC	2 cut(s)	247, 331
RseI	CAYNNNNRTG	2 cut(s)	125, 147
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	273, 276
Sau3AI	GATC	7 cut(s)	66, 91, 145, 151, 175, 181, 205
SchI	GAGTC	2 cut(s)	34, 229
SetI	ASST	3 cut(s)	142, 225, 350
SmiMI	CAYNNNNRTG	2 cut(s)	125, 147
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	162, 334, 358
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	2 cut(s)	313, 368
TaaI	ACNGT	2 cut(s)	117, 294
TasI	AATT	3 cut(s)	162, 334, 358
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	272, 275
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	146, 215
TspRI	CASTG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.