Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Reverse (-)

26298418 .. 26298978

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGACTATTTCTCTGCTACTATTAACTCTAGCTCAGATGGCTCTAACTCTTCTTCAGCGACCAAACACAACGGCACCGGAGAGAAGATCGAGGGTGGCGTGAAGAGCAAAAGCAAAGGAGTGAGGCTTTCCACAGACCCGCAGAGTGTGGCGGCCAGAGAGAGGAGGCATAGGATCAGTGACCGGTTCAAGATCTTGCAGAGCTTGGTTCCTGGTGGGACCAAAATGGACACGGTGTCCATGTTAGAGGAAGCTATCCACTATGTGAAGTTCCTCAAGGCCCAGATATGGCTTCACCAGAGCATGATCAACTTTGTGGACGATGATGATGGTCTTCACCATGACCGTTCATCATCCTCATCATCCTCATCTATGTTCCAGTACCAGCTTCCAGCTGATCATCATCTCCATCATCCAACTGGGTCCCATGATTTCTACTCTCAGAACAATTTCGTGCAACCACCTTCACCAGCTATGAATATTCCATTGCCTGACCCTAATTACTTCCAAGGTCAAGAAGCCATGCCCAATATTGAAGCCTACATGAAATATTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

6.39

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	2 cut(s)	140, 152
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	162, 288
AgeI	ACCGGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	190, 536
AhdI	GACNNNNNGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	7 cut(s)	33, 204, 254, 388, 395, 473, 558
AluI	AGCT	7 cut(s)	33, 204, 254, 388, 395, 473, 558
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	153, 279
AsiGI	ACCGGT	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	3 cut(s)	219, 280, 423
AsuHPI	GGTGA	3 cut(s)	287, 329, 459
AvaII	GGWCC	2 cut(s)	219, 423
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	326
BccI	CCATC	3 cut(s)	32, 323, 417
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	2 cut(s)	306, 397
BfaI	CTAG	2 cut(s)	30, 559
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	219, 423
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmgT120I	GGNCC	3 cut(s)	219, 280, 423
BmiI	GGNNCC	5 cut(s)	76, 210, 220, 424, 425
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	2 cut(s)	77, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 288
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	379, 424
Bse3DI	GCAATG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	3 cut(s)	353, 362, 412
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	162, 288
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	48, 455
BseNI	ACTGG	2 cut(s)	379, 424
BseRI	GAGGAG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	155, 281
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	78, 184
BslFI	GGGAC	2 cut(s)	232, 409
BslI	CCNNNNNNNGG	2 cut(s)	162, 288
BsmFI	GGGAC	2 cut(s)	232, 409
BsnI	GGCC	2 cut(s)	155, 281
Bsp143I	GATC	5 cut(s)	87, 174, 192, 306, 397
BspACI	CCGC	2 cut(s)	140, 152
BspANI	GGCC	2 cut(s)	155, 281
BspCNI	CTCAG	2 cut(s)	47, 454
BspLI	GGNNCC	5 cut(s)	76, 210, 220, 424, 425
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	379, 424
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	87, 174, 192, 306, 397
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	235, 347
Bst6I	CTCTTC	2 cut(s)	55, 98
BstDEI	CTNAG	2 cut(s)	34, 441
BstF5I	GGATG	3 cut(s)	353, 362, 412
BstKTI	GATC	5 cut(s)	90, 177, 195, 309, 400
BstMBI	GATC	5 cut(s)	87, 174, 192, 306, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 105
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	155, 281
BtsCI	GGATG	3 cut(s)	353, 362, 412
BtsIMutI	CAGTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	3 cut(s)	219, 280, 423
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	183
CviAII	CATG	6 cut(s)	241, 304, 341, 428, 523, 544
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	34, 441
DpnI	GATC	5 cut(s)	89, 176, 194, 308, 399
DpnII	GATC	5 cut(s)	87, 174, 192, 306, 397
DraIII	CACNNNGTG	1 cut(s)	265
DriI	GACNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	55, 98
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	2 cut(s)	55, 98
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	219, 423
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	6 cut(s)	244, 307, 344, 431, 526, 547
FaqI	GGGAC	2 cut(s)	232, 409
FatI	CATG	6 cut(s)	240, 303, 340, 427, 522, 543
FauI	CCCGC	1 cut(s)	147
FbaI	TGATCA	2 cut(s)	306, 397
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	3 cut(s)	340, 349, 399
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	30, 559
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	155, 281
HapII	CCGG	2 cut(s)	78, 184
Hin1II	CATG	6 cut(s)	244, 307, 344, 431, 526, 547
HpaII	CCGG	2 cut(s)	78, 184
HphI	GGTGA	3 cut(s)	287, 329, 459
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	37, 444
Hpy188III	TCNNGA	2 cut(s)	190, 515
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	2 cut(s)	235, 347
HpyCH4V	TGCA	2 cut(s)	199, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 105
HpyF3I	CTNAG	2 cut(s)	34, 441
Hsp92II	CATG	6 cut(s)	244, 307, 344, 431, 526, 547
KflI	GGGWCCC	1 cut(s)	423
Ksp22I	TGATCA	2 cut(s)	306, 397
Kzo9I	GATC	5 cut(s)	87, 174, 192, 306, 397
LguI	GCTCTTC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	30, 559
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	5 cut(s)	89, 176, 194, 308, 399
MboI	GATC	5 cut(s)	87, 174, 192, 306, 397
MboII	GAAGA	5 cut(s)	42, 45, 97, 115, 326
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	448, 499
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	8 cut(s)	85, 117, 156, 159, 241, 284, 367, 376
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	78, 184
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	39, 105
NdeII	GATC	5 cut(s)	87, 174, 192, 306, 397
NlaIII	CATG	6 cut(s)	244, 307, 344, 431, 526, 547
NlaIV	GGNNCC	5 cut(s)	76, 210, 220, 424, 425
NmuCI	GTSAC	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	5 cut(s)	76, 210, 220, 424, 425
PspPI	GGNCC	3 cut(s)	219, 280, 423
PspPPI	RGGWCCY	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	5 cut(s)	87, 174, 192, 306, 397
Sau96I	GGNCC	3 cut(s)	219, 280, 423
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	9 cut(s)	35, 206, 256, 390, 397, 466, 475, 514, 560
SinI	GGWCC	2 cut(s)	219, 423
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	448, 499
SsiI	CCGC	2 cut(s)	140, 152
SspI	AATATT	3 cut(s)	481, 532, 551
SspMI	CTAG	2 cut(s)	30, 559
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	235, 347
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	448, 499
TauI	GCSGC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	339, 491, 560
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	219, 423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	30, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.