Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016009

Physical Location & Seq

Genomic Coordinates Forward (+)

6698269 .. 6701447

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTGGTTAGGTAATATATTCAGTTGGGGAATTGTTACACAGCTAAAGTTTAAAGACTCACCTGTCGCACTTACAATATTCTCAAGGAGATGTACCCGTCGTCTAGGGACAAGAATGTGGAGAAGAGGAGCTAACCTTGAAGGAGATGTGGCTAACTTTATTGAAACCGAGCAATTAATGGAGTTTGAAGGTTTCAAGTCCTCGTTTCTGCAGATTCGGGGTTCAATTCCACTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTAAAAATTATTGATCATGAACAGACGTCAAATGTAGTGGAGCGACATTTTCATGATCTTTTCCAAAGATATGGAGAGACAATAGCAGTAGACTTGACTGATAAACACGGTGATGAAGGTCAACTAAGCAAGGCATATGCTAATGAGACACAAAATCTGCCAAACGTGAGATACGTTCCATTTGACTTCCATCATATATGTGGCAACTCAAATTTTGAGAACTTAAAGGTTTTATACGAGCAGCTATCAGAACTACTTGAAAAGCAAGGATACTTTCTCGTTGATGCGGAAGGAAACATACTGGAGGAGCAGAAAGGAATTGTCAGATCTAACTGCATCGACTGCCTCGATAGAACAAATGTTACCCAGAGTTACTTGGCTCAGAAGTGTCTGGATGCCCAATTGCAGAGGATGGGAGTGCTTGATTCAACTGAGTCCATTTCTATGTTTGATGAAGAGTATCAAAAATTTAGAACATTGTGGGCTGAGCATGGTGATGAGGTAAGCCTTGAGTACGCTGGGACTTATGCCTTGAAAGGGGACCTAGTTAGGTATGGAAAACAGACATTTGGAGGAATGATTAAAGATGGGATGAGCGCTCTTTCTAGATATTATTTGAATAACTTTCAGGATGGTATTCGGCAGGATGCCGCTGATCTTATTAGTGGCCGCTATATGGTTAGGAGGGACGGTTCACCACGCCAGATGGAATCCTTTTCTTATCTTCCGGTGGCATCAGCTTTGCTAATCGGAGGTTTGACAGTGACATCTTTCACACTTCAGCAAGCGGGGCGAAACGCCCACCAATTCATGACTTCTGTACTTTGGGCGGGAGTGACTGCCGGTGTAGCGGCAGTGGTGAAAGCTAATGGAAGACAGTTCTGTTCTAGACCTCGCTTGTGCAGATTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

396

Amino Acids

44.98

Weight (kDa)

6.11

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	17 - 158	7.3e-48	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11250
malus_domestica	MD04G1159300.v1.1
prunus_persica	Prupe.6G279500_v2.0.a1
pyrus_communis	pycom04g14090
rosa_chinensis	RchiOBHm_Chr3g0462771
rosa_laevigata	RLG00000024834
rosa_roxburghii	Rroxscaffold_6G00417220
rosa_rugosa	Rorug03G0059100 Rorug03G0059100
rosa_samantha	Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana	Rw3G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AatII	GACGTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	6 cut(s)	560, 924, 943, 1061, 1103, 1124
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	484, 740
AcuI	CTGAAG	1 cut(s)	1037
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	3 cut(s)	94, 788, 1095
AfeI	AGCGCT	1 cut(s)	871
AfiI	CCNNNNNNNGG	2 cut(s)	810, 949
AgsI	TTSAA	9 cut(s)	140, 164, 188, 196, 225, 533, 702, 808, 892
AloI	GAACNNNNNNTCC	2 cut(s)	949, 981
AluBI	AGCT	6 cut(s)	43, 131, 261, 517, 1013, 1139
AluI	AGCT	6 cut(s)	43, 131, 261, 517, 1013, 1139
Alw26I	GTCTC	2 cut(s)	344, 413
Aor51HI	AGCGCT	1 cut(s)	871
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	484, 740
AseI	ATTAAT	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	814
AsuHPI	GGTGA	5 cut(s)	51, 395, 779, 960, 1144
AvaII	GGWCC	1 cut(s)	814
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	1153
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	5 cut(s)	471, 679, 854, 899, 973
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	344, 413
BfaI	CTAG	4 cut(s)	104, 818, 879, 1161
BfmI	CTRYAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	4 cut(s)	515, 924, 943, 1125
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	4 cut(s)	516, 925, 944, 1126
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	815
BmsI	GCATC	5 cut(s)	547, 618, 658, 910, 1016
BpiI	GAAGAC	1 cut(s)	1153
BpmI	CTGGAG	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	3 cut(s)	67, 277, 803
BsaHI	GRCGYC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	1000
BsaXI	ACNNNNNCTCC	2 cut(s)	949, 979
Bsc4I	CCNNNNNNNGG	2 cut(s)	810, 949
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	1 cut(s)	579
BseGI	GGATG	5 cut(s)	673, 690, 870, 910, 925
BseLI	CCNNNNNNNGG	2 cut(s)	810, 949
BseMII	CTCAG	3 cut(s)	668, 696, 750
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	2 cut(s)	141, 593
BseXI	GCAGC	1 cut(s)	526
BseYI	CCCAGC	1 cut(s)	791
BshFI	GGCC	1 cut(s)	942
BsiSI	CCGG	2 cut(s)	1001, 1116
BslFI	GGGAC	4 cut(s)	121, 808, 827, 974
BslI	CCNNNNNNNGG	2 cut(s)	810, 949
BsmAI	GTCTC	2 cut(s)	344, 413
BsmFI	GGGAC	4 cut(s)	121, 808, 827, 974
BsnI	GGCC	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	286, 328, 599, 928
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	6 cut(s)	560, 924, 943, 1061, 1103, 1124
BspANI	GGCC	1 cut(s)	942
BspCNI	CTCAG	3 cut(s)	667, 697, 751
BspHI	TCATGA	3 cut(s)	289, 325, 1083
BspLI	GGNNCC	1 cut(s)	815
BspMAI	CTGCAG	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	1115
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	1115
BssMI	GATC	4 cut(s)	286, 328, 599, 928
BssNI	GRCGYC	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	383, 965, 1036, 1152
Bst6I	CTCTTC	2 cut(s)	118, 723
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	1059
BstDEI	CTNAG	4 cut(s)	398, 654, 705, 759
BstF5I	GGATG	5 cut(s)	673, 690, 870, 910, 925
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	4 cut(s)	289, 331, 602, 931
BstMAI	GTCTC	2 cut(s)	344, 413
BstMBI	GATC	4 cut(s)	286, 328, 599, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	615, 1063, 1121
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	1153
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	2 cut(s)	237, 344
BstYI	RGATCY	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	942
BtsCI	GGATG	5 cut(s)	673, 690, 870, 910, 925
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	2 cut(s)	1041, 1134
Cac8I	GCNNGC	1 cut(s)	1059
CciI	TCATGA	3 cut(s)	289, 325, 1083
CfoI	GCGC	1 cut(s)	872
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	1 cut(s)	814
Csp6I	GTAC	3 cut(s)	93, 787, 1094
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	4 cut(s)	290, 326, 764, 1084
CviQI	GTAC	3 cut(s)	93, 787, 1094
DdeI	CTNAG	4 cut(s)	398, 654, 705, 759
DpnI	GATC	4 cut(s)	288, 330, 601, 930
DpnII	GATC	4 cut(s)	286, 328, 599, 928
DraI	TTTAAA	1 cut(s)	52
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	2 cut(s)	118, 723
EarI	CTCTTC	2 cut(s)	118, 723
Eco47I	GGWCC	1 cut(s)	814
Eco47III	AGCGCT	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	814
FaeI	CATG	4 cut(s)	293, 329, 767, 1087
FaqI	GGGAC	4 cut(s)	121, 808, 827, 974
FatI	CATG	4 cut(s)	289, 325, 763, 1083
FauI	CCCGC	2 cut(s)	1054, 1096
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	515, 924, 943, 1125
FokI	GGATG	5 cut(s)	680, 697, 877, 917, 932
Fsp4HI	GCNGC	4 cut(s)	515, 924, 943, 1125
FspBI	CTAG	4 cut(s)	104, 818, 879, 1161
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	4 cut(s)	515, 924, 943, 1125
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	1 cut(s)	942
HapII	CCGG	2 cut(s)	1001, 1116
HhaI	GCGC	1 cut(s)	872
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	293, 329, 767, 1087
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HincII	GTYRAC	2 cut(s)	253, 395
HindII	GTYRAC	2 cut(s)	253, 395
HinfI	GANTC	5 cut(s)	56, 214, 698, 707, 983
HpaII	CCGG	2 cut(s)	1001, 1116
HphI	GGTGA	5 cut(s)	51, 395, 779, 960, 1144
Hpy166II	GTNNAC	4 cut(s)	253, 364, 395, 968
Hpy188I	TCNGA	4 cut(s)	523, 599, 657, 1025
Hpy188III	TCNNGA	7 cut(s)	290, 326, 665, 879, 902, 1084, 1161
Hpy8I	GTNNAC	4 cut(s)	253, 364, 395, 968
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	4 cut(s)	134, 182, 383, 557
HpyCH4III	ACNGT	4 cut(s)	383, 965, 1036, 1152
HpyCH4IV	ACGT	3 cut(s)	299, 438, 447
HpyCH4V	TGCA	4 cut(s)	211, 609, 679, 1176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	615, 1063, 1121
HpyF3I	CTNAG	4 cut(s)	398, 654, 705, 759
HpySE526I	ACGT	3 cut(s)	299, 438, 447
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	293, 329, 767, 1087
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	286, 328, 599, 928
LmnI	GCTCC	4 cut(s)	128, 241, 313, 580
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	5 cut(s)	547, 618, 658, 910, 1016
MaeI	CTAG	4 cut(s)	104, 818, 879, 1161
MaeII	ACGT	3 cut(s)	299, 438, 447
MaeIII	GTNAC	5 cut(s)	34, 634, 644, 1036, 1108
MalI	GATC	4 cut(s)	288, 330, 601, 930
MboI	GATC	4 cut(s)	286, 328, 599, 928
MboII	GAAGA	4 cut(s)	135, 740, 989, 1158
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	1 cut(s)	599
MlyI	GAGTC	2 cut(s)	50, 716
MseI	TTAA	4 cut(s)	51, 176, 497, 855
MslI	CAYNNNNRTG	5 cut(s)	324, 384, 471, 716, 768
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	2 cut(s)	1001, 1116
MunI	CAATTG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	615, 1063, 1121
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	4 cut(s)	286, 328, 599, 928
NlaIII	CATG	4 cut(s)	293, 329, 767, 1087
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	2 cut(s)	1036, 1108
PagI	TCATGA	3 cut(s)	289, 325, 1083
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 618
PfeI	GAWTC	3 cut(s)	214, 698, 983
PkrI	GCNGC	4 cut(s)	516, 925, 944, 1126
PleI	GAGTC	2 cut(s)	50, 715
PpsI	GAGTC	2 cut(s)	50, 715
PpuMI	RGGWCCY	1 cut(s)	814
PshBI	ATTAAT	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	814
PspFI	CCCAGC	1 cut(s)	791
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	1 cut(s)	814
PspPPI	RGGWCCY	1 cut(s)	814
PsrI	GAACNNNNNNTAC	2 cut(s)	619, 651
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	3 cut(s)	94, 788, 1095
RsaNI	GTAC	3 cut(s)	93, 787, 1094
RseI	CAYNNNNRTG	5 cut(s)	324, 384, 471, 716, 768
SaqAI	TTAA	4 cut(s)	51, 176, 497, 855
SatI	GCNGC	4 cut(s)	515, 924, 943, 1125
Sau3AI	GATC	4 cut(s)	286, 328, 599, 928
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	2 cut(s)	50, 716
SfaNI	GCATC	5 cut(s)	547, 618, 658, 910, 1016
SfcI	CTRYAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	5 cut(s)	324, 384, 471, 716, 768
SmlI	CTYRAG	3 cut(s)	82, 256, 782
SmoI	CTYRAG	3 cut(s)	82, 256, 782
SsiI	CCGC	6 cut(s)	560, 924, 943, 1061, 1103, 1124
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	4 cut(s)	104, 818, 879, 1161
TaaI	ACNGT	4 cut(s)	383, 965, 1036, 1152
TaiI	ACGT	3 cut(s)	302, 441, 450
TaqI	TCGA	2 cut(s)	612, 621
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	3 cut(s)	926, 945, 1127
TfiI	GAWTC	3 cut(s)	214, 698, 983
Tru1I	TTAA	4 cut(s)	51, 176, 497, 855
Tru9I	TTAA	4 cut(s)	51, 176, 497, 855
TscAI	CASTG	2 cut(s)	1041, 1134
TseFI	GTSAC	2 cut(s)	1036, 1108
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	2 cut(s)	1036, 1108
TspDTI	ATGAA	5 cut(s)	306, 314, 402, 741, 1072
TspRI	CASTG	2 cut(s)	1041, 1134
VpaK11BI	GGWCC	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	2 cut(s)	484, 740
XbaI	TCTAGA	2 cut(s)	878, 1160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	4 cut(s)	104, 818, 879, 1161
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.