Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016009

Physical Location & Seq

Genomic Coordinates Forward (+)

10034532 .. 10039381

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGACGGTGGGTCTTCTTCTTCTTCTTCTTCATCTTCCGGCGGAAACTTCAAGCTCTACGAGAAGTTGGAGTTGCAGGAGTTTCCGGACAAGTTCGTCGTCAAATCAGTCGAAGCTCCCGATCAAGGCTTCGTGATCGCCCGCCGCGACGGGACTATCGAACCGCTTGACGGTGATTCTTCTTCTGCAAGTCCGTCCAAAACGTCGACGATATATGGAGTCGTCGGAACGATCAGATTGCTTGCAGGAAATTACTTGCTTGTAATAACTTCTCGGATAGAAGTTGGGAACTATCTTGGCTTCCCTGTTTACCGGGTGACTTCTATGAAGTTTCTTTCCTGCAATGAGGTGTTGAAGCTCTCAACTGCTCAAGAAAAAAAAGATGAAGCTTACTTCATGGCTTTGTTGAAAACAGTCCAATCAACTCCAGGGCTGTACTTTTCATATGAAACAGATTTAACATTAAACTTTCAGAGAAGACGCAAGTTGATTGAAGGTTGGATGGCCAAACCATTATGGAAGCAGGCTGACCCTCGATTTGTTTGGAACAAAAATCTTTTAGATGAGCTTATCGAGTTCAAGCTGGACGGGTTTATTATTCCTCTTCTACAAGGAAATATCCTCAACTTCCAGACTACACAGTTGAAGTTAAAAGACTTGCCTGTCGCACTTACAATATTCTCAAGGAGGTGTACCCGTCGTCTAGGGACAAGAATGTGGAGAAGAGGAGCTAACCTTGAAGGAGATGTAGCTAACTTTATTGAAACCGAGCAATTGGCGGAGTTTGAAGGTTTCAAGTCCTCATTACTTCAGATTCGGGGTTCAATTCCACTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTTAAAATTATTGATCATGAGCAGACGTCAAATGTAGTGGAGCGACATTTTCATGATCTTTTCCAAAGATATGGAGAGACAATAGCAGTAGACTTGACTGATAAACATGGTGATGAAGGTGAACTAAGCAAGGCATTTGCTAATGAGACGCAAAATCTGCCAAACGTGAGATACGTTCCATTTGACTTCCATCATATATGTGGCAACTCAAATTTTGAAAACTTAAAGGTCTTATACGAGCAACTATCAGAGCTACTTGAAAACCAAGGATACTTTCTCGTTGATGCGGAAGGAAACATACTGGAGGACCAGAAAGGAATTGTCAGATCTAACTGCATCGACTGTCTCGATAGAACAAATGTTACCCAGAGTTACTTGGCTCAGAAGTGTCTGGATGCCCAGTTGCAGAGGATGGGAGTGCTTGATTCAACTGAGTCCATTTCTGTGTTTGATGAAGAGTATCAAAAATTCCGAACATTGTGGGCTGAGCATGGTGATGAGATAAGCCTTGAGTATGCTGGGACTTACGCCTTGAAAGGGGACCTAGTTAGGTATGGAAAACAGACATTTGGAGGAATGATTAGAGATGGGATGAGTGCTCTTTCAAGATATTATTTGAATAACTTTCAGGATGGTATTCGGCAGGATGCTGCTGATCTTATCAGTGGCCACTATACTGTTAGGAGGGATGGTTCAGTACGCCAGATGGAATCCTTTTCTTATCTACCGGTGGCATCAGCTTTGCTAATCGGAGGTTTGACGCTGACATCTTTCACACTTCAGCAAGCGGGGCGAAACGCCCACCAATTTATGAGTTCTGTACTTTGGGCTGGAATGACTGCCGGATTAGCAGCAGTGGTGAAAGCTAATGGAAGACAGTTCTGTTCTAGACCTCGCTTGTGCAGACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

595

Amino Acids

67.2

Weight (kDa)

5.86

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	72 - 358	4.3e-78	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11250
malus_domestica	MD04G1159300.v1.1
prunus_persica	Prupe.6G279500_v2.0.a1
pyrus_communis	pycom04g14090
rosa_chinensis	RchiOBHm_Chr3g0462771
rosa_laevigata	RLG00000024834
rosa_roxburghii	Rroxscaffold_6G00417220
rosa_rugosa	Rorug03G0059100 Rorug03G0059100
rosa_samantha	Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana	Rw3G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	95, 662
AatII	GACGTC	1 cut(s)	902
AccI	GTMKAC	2 cut(s)	206, 963
AccII	CGCG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	7 cut(s)	42, 142, 145, 164, 779, 1160, 1661
AcoI	YGGCCR	2 cut(s)	504, 1540
AcsI	RAATTY	2 cut(s)	1084, 1340
AcuI	CTGAAG	2 cut(s)	794, 1637
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	4 cut(s)	437, 694, 1572, 1695
AfiI	CCNNNNNNNGG	3 cut(s)	125, 170, 1410
AgeI	ACCGGT	1 cut(s)	1600
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	1131, 1163
AloI	GAACNNNNNNTCC	2 cut(s)	1549, 1581
Alw21I	GWGCWC	1 cut(s)	1474
Alw26I	GTCTC	3 cut(s)	944, 1013, 1223
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	2 cut(s)	504, 1540
ApeKI	GCWGC	2 cut(s)	1523, 1724
ApoI	RAATTY	2 cut(s)	1084, 1340
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AsiGI	ACCGGT	1 cut(s)	1600
AspS9I	GGNCC	2 cut(s)	1180, 1414
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	6 cut(s)	185, 328, 995, 1004, 1379, 1744
AvaII	GGWCC	2 cut(s)	1180, 1414
BalI	TGGCCA	2 cut(s)	506, 1542
BarI	GAAGNNNNNNTAC	2 cut(s)	1155, 1187
BbsI	GAAGAC	3 cut(s)	6, 484, 1753
Bbv12I	GWGCWC	1 cut(s)	1474
BbvI	GCAGC	2 cut(s)	1510, 1736
BccI	CCATC	7 cut(s)	496, 1071, 1279, 1454, 1499, 1556, 1573
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	1136
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	3 cut(s)	944, 1013, 1223
BfaI	CTAG	3 cut(s)	704, 1418, 1761
BfuI	GTATCC	1 cut(s)	1136
BglII	AGATCT	1 cut(s)	1199
BisI	GCNGC	3 cut(s)	145, 1524, 1725
BlpI	GCTNAGC	1 cut(s)	1359
BlsI	GCNGC	3 cut(s)	146, 1525, 1726
Bme1390I	CCNGG	2 cut(s)	314, 429
Bme18I	GGWCC	2 cut(s)	1180, 1414
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	1180, 1414
BmiI	GGNNCC	1 cut(s)	1415
BmrFI	CCNGG	2 cut(s)	314, 429
BmrI	ACTGGG	1 cut(s)	1267
BmsI	GCATC	5 cut(s)	1147, 1218, 1258, 1510, 1616
BmuI	ACTGGG	1 cut(s)	1267
BpiI	GAAGAC	3 cut(s)	6, 484, 1753
BpmI	CTGGAG	2 cut(s)	411, 1196
Bpu1102I	GCTNAGC	1 cut(s)	1359
BpuEI	CTTGAG	4 cut(s)	354, 667, 877, 1403
BpuMI	CCSGG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	428, 1138
BsaWI	WCCGGW	2 cut(s)	85, 1600
BsaXI	ACNNNNNCTCC	2 cut(s)	1549, 1579
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 170, 1410
Bse118I	RCCGGY	1 cut(s)	1600
Bse1I	ACTGG	2 cut(s)	1179, 1273
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	428, 1138
BseGI	GGATG	7 cut(s)	507, 1273, 1290, 1470, 1510, 1525, 1567
BseLI	CCNNNNNNNGG	3 cut(s)	125, 170, 1410
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	1268, 1296, 1350
BseNI	ACTGG	2 cut(s)	1179, 1273
BseRI	GAGGAG	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	1510, 1736
BseYI	CCCAGC	1 cut(s)	1391
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	506, 1542
BshTI	ACCGGT	1 cut(s)	1600
BsiHKAI	GWGCWC	1 cut(s)	1474
BsiSI	CCGG	5 cut(s)	39, 86, 313, 1601, 1716
BslFI	GGGAC	4 cut(s)	166, 721, 1408, 1427
BslI	CCNNNNNNNGG	3 cut(s)	125, 170, 1410
BsmAI	GTCTC	3 cut(s)	944, 1013, 1223
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	4 cut(s)	166, 721, 1408, 1427
BsnI	GGCC	2 cut(s)	506, 1542
Bsp1286I	GDGCHC	1 cut(s)	1474
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
Bsp1720I	GCTNAGC	1 cut(s)	1359
BspACI	CCGC	7 cut(s)	42, 142, 145, 164, 779, 1160, 1661
BspANI	GGCC	2 cut(s)	506, 1542
BspCNI	CTCAG	3 cut(s)	1267, 1297, 1351
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	2 cut(s)	889, 925
BspLI	GGNNCC	1 cut(s)	1415
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	1600
BsrI	ACTGG	2 cut(s)	1179, 1273
BssAI	RCCGGY	1 cut(s)	1600
BssECI	CCNNGG	2 cut(s)	428, 1138
BssMI	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
BssNI	GRCGYC	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	1138
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	7 cut(s)	8, 173, 415, 642, 1217, 1552, 1752
Bst6I	CTCTTC	3 cut(s)	609, 718, 1323
BstACI	GRCGYC	1 cut(s)	899
BstAPI	GCANNNNNTGC	1 cut(s)	1030
BstC8I	GCNNGC	4 cut(s)	142, 243, 525, 1659
BstDEI	CTNAG	4 cut(s)	998, 1254, 1305, 1359
BstF5I	GGATG	7 cut(s)	507, 1273, 1290, 1470, 1510, 1525, 1567
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	7 cut(s)	124, 138, 234, 889, 931, 1202, 1531
BstMAI	GTCTC	3 cut(s)	944, 1013, 1223
BstMBI	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
BstMWI	GCNNNNNNNGC	3 cut(s)	1030, 1663, 1721
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	312, 427
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	1510, 1736
BstV2I	GAAGAC	3 cut(s)	6, 484, 1753
BstX2I	RGATCY	1 cut(s)	1199
BstXI	CCANNNNNNTGG	2 cut(s)	837, 944
BstYI	RGATCY	1 cut(s)	1199
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	2 cut(s)	506, 1542
BtsCI	GGATG	7 cut(s)	507, 1273, 1290, 1470, 1510, 1525, 1567
BtsI	GCAGTG	1 cut(s)	1734
BtsIMutI	CAGTG	2 cut(s)	1543, 1734
Cac8I	GCNNGC	4 cut(s)	142, 243, 525, 1659
CciI	TCATGA	2 cut(s)	889, 925
Cfr10I	RCCGGY	1 cut(s)	1600
Cfr13I	GGNCC	2 cut(s)	1180, 1414
CseI	GACGC	3 cut(s)	489, 1030, 1642
Csp6I	GTAC	4 cut(s)	436, 693, 1571, 1694
CspAI	ACCGGT	1 cut(s)	1600
CspCI	CAANNNNNGTGG	2 cut(s)	891, 926
CviAII	CATG	5 cut(s)	397, 890, 926, 980, 1364
CviQI	GTAC	4 cut(s)	436, 693, 1571, 1694
DdeI	CTNAG	4 cut(s)	998, 1254, 1305, 1359
DpnI	GATC	7 cut(s)	123, 137, 233, 888, 930, 1201, 1530
DpnII	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
DrdI	GACNNNNNNGTC	2 cut(s)	95, 662
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	2 cut(s)	95, 662
EaeI	YGGCCR	2 cut(s)	504, 1540
Eam1104I	CTCTTC	3 cut(s)	609, 718, 1323
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	3 cut(s)	609, 718, 1323
EciI	GGCGGA	2 cut(s)	57, 794
Eco130I	CCWWGG	1 cut(s)	1138
Eco47I	GGWCC	2 cut(s)	1180, 1414
Eco57I	CTGAAG	2 cut(s)	794, 1637
EcoO109I	RGGNCCY	1 cut(s)	1414
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	1138
ErhI	CCWWGG	1 cut(s)	1138
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	5 cut(s)	400, 893, 929, 983, 1367
FaqI	GGGAC	4 cut(s)	166, 721, 1408, 1427
FatI	CATG	5 cut(s)	396, 889, 925, 979, 1363
FauI	CCCGC	2 cut(s)	149, 1654
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	886
FblI	GTMKAC	2 cut(s)	206, 963
Fnu4HI	GCNGC	3 cut(s)	145, 1524, 1725
FokI	GGATG	7 cut(s)	514, 1280, 1297, 1477, 1517, 1532, 1574
Fsp4HI	GCNGC	3 cut(s)	145, 1524, 1725
FspBI	CTAG	3 cut(s)	704, 1418, 1761
GluI	GCNGC	3 cut(s)	145, 1524, 1725
GsaI	CCCAGC	1 cut(s)	1395
GsuI	CTGGAG	2 cut(s)	411, 1196
HaeIII	GGCC	2 cut(s)	506, 1542
HapII	CCGG	5 cut(s)	39, 86, 313, 1601, 1716
HgaI	GACGC	3 cut(s)	489, 1030, 1642
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	5 cut(s)	400, 893, 929, 983, 1367
HincII	GTYRAC	2 cut(s)	207, 853
HindII	GTYRAC	2 cut(s)	207, 853
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	6 cut(s)	176, 219, 814, 1298, 1307, 1583
HpaII	CCGG	5 cut(s)	39, 86, 313, 1601, 1716
HphI	GGTGA	6 cut(s)	185, 328, 995, 1004, 1379, 1744
Hpy166II	GTNNAC	6 cut(s)	207, 310, 693, 853, 964, 995
Hpy8I	GTNNAC	6 cut(s)	207, 310, 693, 853, 964, 995
Hpy99I	CGWCG	6 cut(s)	101, 152, 208, 211, 227, 702
HpyAV	CCTTC	5 cut(s)	488, 734, 782, 983, 1157
HpyCH4III	ACNGT	7 cut(s)	8, 173, 415, 642, 1217, 1552, 1752
HpyCH4IV	ACGT	4 cut(s)	203, 899, 1038, 1047
HpyCH4V	TGCA	7 cut(s)	76, 188, 245, 342, 1209, 1279, 1776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1030, 1663, 1721
HpyF3I	CTNAG	4 cut(s)	998, 1254, 1305, 1359
HpySE526I	ACGT	4 cut(s)	203, 899, 1038, 1047
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	5 cut(s)	400, 893, 929, 983, 1367
Kpn2I	TCCGGA	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
LmnI	GCTCC	4 cut(s)	121, 728, 841, 913
Lsp1109I	GCAGC	2 cut(s)	1510, 1736
LweI	GCATC	5 cut(s)	1147, 1218, 1258, 1510, 1616
MaeI	CTAG	3 cut(s)	704, 1418, 1761
MaeII	ACGT	4 cut(s)	203, 899, 1038, 1047
MaeIII	GTNAC	3 cut(s)	316, 1234, 1244
MalI	GATC	7 cut(s)	123, 137, 233, 888, 930, 1201, 1530
MboI	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	1199
MhlI	GDGCHC	1 cut(s)	1474
MlsI	TGGCCA	2 cut(s)	506, 1542
MluCI	AATT	9 cut(s)	250, 773, 825, 846, 879, 1084, 1191, 1340, 1679
MluNI	TGGCCA	2 cut(s)	506, 1542
MlyI	GAGTC	2 cut(s)	228, 1316
MmeI	TCCRAC	3 cut(s)	48, 205, 479
Mox20I	TGGCCA	2 cut(s)	506, 1542
MroI	TCCGGA	1 cut(s)	85
MscI	TGGCCA	2 cut(s)	506, 1542
MseI	TTAA	5 cut(s)	458, 464, 650, 876, 1097
MslI	CAYNNNNRTG	5 cut(s)	924, 984, 1071, 1316, 1368
Msp20I	TGGCCA	2 cut(s)	506, 1542
MspI	CCGG	5 cut(s)	39, 86, 313, 1601, 1716
MspR9I	CCNGG	2 cut(s)	314, 429
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	1030, 1663, 1721
NciI	CCSGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
NlaIII	CATG	5 cut(s)	400, 893, 929, 983, 1367
NlaIV	GGNNCC	1 cut(s)	1415
NmuCI	GTSAC	1 cut(s)	316
PagI	TCATGA	2 cut(s)	889, 925
PcsI	WCGNNNNNNNCGW	5 cut(s)	117, 144, 156, 1044, 1218
PfeI	GAWTC	4 cut(s)	176, 814, 1298, 1583
PinAI	ACCGGT	1 cut(s)	1600
PkrI	GCNGC	3 cut(s)	146, 1525, 1726
PleI	GAGTC	2 cut(s)	227, 1315
PpsI	GAGTC	2 cut(s)	227, 1315
PpuMI	RGGWCCY	1 cut(s)	1414
Psp5II	RGGWCCY	1 cut(s)	1414
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	1391
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	1415
PspPI	GGNCC	2 cut(s)	1180, 1414
PspPPI	RGGWCCY	1 cut(s)	1414
PsrI	GAACNNNNNNTAC	2 cut(s)	1219, 1251
PsuI	RGATCY	1 cut(s)	1199
RsaI	GTAC	4 cut(s)	437, 694, 1572, 1695
RsaNI	GTAC	4 cut(s)	436, 693, 1571, 1694
RseI	CAYNNNNRTG	5 cut(s)	924, 984, 1071, 1316, 1368
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	5 cut(s)	458, 464, 650, 876, 1097
SatI	GCNGC	3 cut(s)	145, 1524, 1725
Sau3AI	GATC	7 cut(s)	121, 135, 231, 886, 928, 1199, 1528
Sau96I	GGNCC	2 cut(s)	1180, 1414
SchI	GAGTC	2 cut(s)	228, 1316
ScrFI	CCNGG	2 cut(s)	314, 429
SduI	GDGCHC	1 cut(s)	1474
SfaNI	GCATC	5 cut(s)	1147, 1218, 1258, 1510, 1616
SgrDI	CGTCGACG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	1180, 1414
SmiMI	CAYNNNNRTG	5 cut(s)	924, 984, 1071, 1316, 1368
SmlI	CTYRAG	4 cut(s)	369, 682, 856, 1382
SmoI	CTYRAG	4 cut(s)	369, 682, 856, 1382
Sse9I	AATT	9 cut(s)	250, 773, 825, 846, 879, 1084, 1191, 1340, 1679
SsiI	CCGC	7 cut(s)	42, 142, 145, 164, 779, 1160, 1661
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	3 cut(s)	704, 1418, 1761
StyD4I	CCNGG	2 cut(s)	312, 427
StyI	CCWWGG	1 cut(s)	1138
TaaI	ACNGT	7 cut(s)	8, 173, 415, 642, 1217, 1552, 1752
TaiI	ACGT	4 cut(s)	206, 902, 1041, 1050
TaqI	TCGA	7 cut(s)	111, 159, 206, 535, 573, 1212, 1221
TasI	AATT	9 cut(s)	250, 773, 825, 846, 879, 1084, 1191, 1340, 1679
TatI	WGTACW	2 cut(s)	435, 1693
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	4 cut(s)	176, 814, 1298, 1583
Tru1I	TTAA	5 cut(s)	458, 464, 650, 876, 1097
Tru9I	TTAA	5 cut(s)	458, 464, 650, 876, 1097
TscAI	CASTG	2 cut(s)	1543, 1734
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	1523, 1724
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	9 cut(s)	21, 341, 385, 399, 432, 462, 914, 1002, 1341
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	1543, 1734
VpaK11BI	GGWCC	2 cut(s)	1180, 1414
XapI	RAATTY	2 cut(s)	1084, 1340
XbaI	TCTAGA	1 cut(s)	1760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1070
XmiI	GTMKAC	2 cut(s)	206, 963
XspI	CTAG	3 cut(s)	704, 1418, 1761
ZraI	GACGTC	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.