Rh3BG120900

Phosphoinositide phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016009
Physical Location & Seq
Forward (+)
9964140 .. 9967048
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG120900.1

Sequence Viewer

Length: 1074 bp
ATGTGGAGAAGAGGAGCTAACCTTGAAGGAGATGTAGCTAACTTTATTGAAACCGAGCAATTGGTGGAGTTTGAAGGTTTCAAGTCCTCATTACTTCAGATTCGGGGTTCAATTCCACTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTTAAAATTATTGATCATGAGCAGACGTCAAATGTAGTGGAGCGACATTTTCATGATCTTTTCCAAAGATATGGAGAGACAATAGCAGTAGACTTGACTGATAAACATGGTGATGAAGGTGAACTAAGCAAAGCATTTGCTAATGAGACGCAAAATCTGCCAAACGTGAGATATGTTCCATTTGACTTCCATCATATATGTGGCAACTCAAATTTTGAAAACTTAAAGGTCTTATACGAGCAACTATCAGAGCTACTTGAAAACCAAGGATACTTTCTCGTTGATGCGGAAGGAAACATACTGGAGAACCAGAAAGGAATTGTCAGATCTAACTGCATCGACTGTCTCGATAGAACAAATGTTACCCAGAGTTACTTGGCTCAGAAGTGTCTGGATGCCCAGTTGCAGAGGATGGGAGTGCTTGATTCAACTGAGTTCATTTCTGTGTTTGATGAAGAGTATCAAAAATTCCGAACATTGTGGGCTGAGCATGGTGACGAGATAAGCCTTGAGTATGCTGGGACTTACGCATTGAAAGGGGACCTAGTTAGGTATGGAAAACAGACATTTGGAGGAATGATTAGAGATGGGATGAGTGCTCTTTCAAGATATTATTTGAATAACTTTCAGGATGGTATTCGGCAGGATGCTGCTGATCTTATCAGTGGCCACTATACTGTTAGGAGGGATGGTTCAGTATGCCAGATGGAATCCTTTTCTTATCTACCGGTGGCATCAGCTTTGCTAATCGGAGGTTTGACGCTGACATCTTTCACACTTCAGCAAGCGGGGCGAAACGCCCACCAATTTATGAGTTCTGTACTTTGGGCTGGAATGACTGCCGGAATAGCAGCAGTGGTGAAAGCTAATGGAAGACAGTTCTGTTCTAGACCTCGTTTGTGCAGACTTGTGTAA

Protein Analysis

357

Amino Acids

40.45

Weight (kDa)

5.19

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 2 - 120 1.2e-37 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51830
fragaria_vesca FvH4_6g11250
malus_domestica MD04G1159300.v1.1
prunus_persica Prupe.6G279500_v2.0.a1
pyrus_communis pycom04g14090
rosa_chinensis RchiOBHm_Chr3g0462771
rosa_laevigata RLG00000024834
rosa_roxburghii Rroxscaffold_6G00417220
rosa_rugosa Rorug03G0059100 Rorug03G0059100
rosa_samantha Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana Rw3G009920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 249
AciI CCGC 2 cut(s) 446, 947
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 2 cut(s) 370, 626
AcuI CTGAAG 2 cut(s) 80, 923
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 981
AgeI ACCGGT 1 cut(s) 886
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AloI GAACNNNNNNTCC 2 cut(s) 835, 867
AluBI AGCT 6 cut(s) 17, 38, 147, 412, 899, 1025
AluI AGCT 6 cut(s) 17, 38, 147, 412, 899, 1025
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 230, 299, 509
AoxI GGCC 1 cut(s) 826
ApeKI GCWGC 2 cut(s) 809, 1010
ApoI RAATTY 2 cut(s) 370, 626
AsiGI ACCGGT 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 4 cut(s) 281, 290, 665, 1030
AvaII GGWCC 1 cut(s) 700
BalI TGGCCA 1 cut(s) 828
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BbsI GAAGAC 1 cut(s) 1039
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 2 cut(s) 796, 1022
BccI CCATC 6 cut(s) 357, 565, 740, 785, 842, 859
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 3 cut(s) 230, 299, 509
BfaI CTAG 2 cut(s) 704, 1047
BfuI GTATCC 1 cut(s) 422
BglII AGATCT 1 cut(s) 485
BisI GCNGC 2 cut(s) 810, 1011
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 2 cut(s) 811, 1012
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 1 cut(s) 701
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 5 cut(s) 433, 504, 544, 796, 902
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 1039
BpmI CTGGAG 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 2 cut(s) 163, 689
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 424
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 835, 865
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 2 cut(s) 465, 559
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 6 cut(s) 559, 576, 756, 796, 811, 853
BseMII CTCAG 3 cut(s) 554, 582, 636
BseNI ACTGG 2 cut(s) 465, 559
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 796, 1022
BseYI CCCAGC 1 cut(s) 677
BshFI GGCC 1 cut(s) 828
BshTI ACCGGT 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 2 cut(s) 887, 1002
BslFI GGGAC 2 cut(s) 694, 713
BsmAI GTCTC 3 cut(s) 230, 299, 509
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 694, 713
BsnI GGCC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 760
Bsp143I GATC 4 cut(s) 172, 214, 485, 814
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 2 cut(s) 446, 947
BspANI GGCC 1 cut(s) 828
BspCNI CTCAG 3 cut(s) 553, 583, 637
BspHI TCATGA 2 cut(s) 175, 211
BspLI GGNNCC 1 cut(s) 701
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 2 cut(s) 465, 559
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 4 cut(s) 172, 214, 485, 814
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 3 cut(s) 503, 838, 1038
Bst6I CTCTTC 2 cut(s) 4, 609
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 4 cut(s) 284, 540, 591, 645
BstF5I GGATG 6 cut(s) 559, 576, 756, 796, 811, 853
BstKTI GATC 4 cut(s) 175, 217, 488, 817
BstMAI GTCTC 3 cut(s) 230, 299, 509
BstMBI GATC 4 cut(s) 172, 214, 485, 814
BstMWI GCNNNNNNNGC 3 cut(s) 316, 949, 1007
BstV1I GCAGC 2 cut(s) 796, 1022
BstV2I GAAGAC 1 cut(s) 1039
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 2 cut(s) 123, 230
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 828
BtsCI GGATG 6 cut(s) 559, 576, 756, 796, 811, 853
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 2 cut(s) 829, 1020
Cac8I GCNNGC 1 cut(s) 945
CciI TCATGA 2 cut(s) 175, 211
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 700
CseI GACGC 2 cut(s) 316, 928
Csp6I GTAC 1 cut(s) 980
CspAI ACCGGT 1 cut(s) 886
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 4 cut(s) 176, 212, 266, 650
CviQI GTAC 1 cut(s) 980
DdeI CTNAG 4 cut(s) 284, 540, 591, 645
DpnI GATC 4 cut(s) 174, 216, 487, 816
DpnII GATC 4 cut(s) 172, 214, 485, 814
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 2 cut(s) 4, 609
EarI CTCTTC 2 cut(s) 4, 609
Eco130I CCWWGG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 80, 923
EcoO109I RGGNCCY 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 4 cut(s) 179, 215, 269, 653
FaqI GGGAC 2 cut(s) 694, 713
FatI CATG 4 cut(s) 175, 211, 265, 649
FauI CCCGC 1 cut(s) 940
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 810, 1011
FokI GGATG 6 cut(s) 566, 583, 763, 803, 818, 860
Fsp4HI GCNGC 2 cut(s) 810, 1011
FspBI CTAG 2 cut(s) 704, 1047
GluI GCNGC 2 cut(s) 810, 1011
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 828
HapII CCGG 2 cut(s) 887, 1002
HgaI GACGC 2 cut(s) 316, 928
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 4 cut(s) 179, 215, 269, 653
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 100, 584, 869
HpaII CCGG 2 cut(s) 887, 1002
HphI GGTGA 4 cut(s) 281, 290, 665, 1030
Hpy166II GTNNAC 3 cut(s) 139, 250, 281
Hpy188I TCNGA 6 cut(s) 99, 409, 485, 543, 632, 911
Hpy188III TCNNGA 7 cut(s) 176, 212, 506, 551, 765, 788, 1047
Hpy8I GTNNAC 3 cut(s) 139, 250, 281
HpyAV CCTTC 4 cut(s) 20, 68, 269, 443
HpyCH4III ACNGT 3 cut(s) 503, 838, 1038
HpyCH4IV ACGT 2 cut(s) 185, 324
HpyCH4V TGCA 3 cut(s) 495, 565, 1062
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 949, 1007
HpyF3I CTNAG 4 cut(s) 284, 540, 591, 645
HpySE526I ACGT 2 cut(s) 185, 324
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 4 cut(s) 179, 215, 269, 653
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 172, 214, 485, 814
LmnI GCTCC 3 cut(s) 14, 127, 199
Lsp1109I GCAGC 2 cut(s) 796, 1022
LweI GCATC 5 cut(s) 433, 504, 544, 796, 902
MaeI CTAG 2 cut(s) 704, 1047
MaeII ACGT 2 cut(s) 185, 324
MaeIII GTNAC 3 cut(s) 520, 530, 653
MalI GATC 4 cut(s) 174, 216, 487, 816
MboI GATC 4 cut(s) 172, 214, 485, 814
MboII GAAGA 3 cut(s) 21, 626, 1044
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 760
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 8 cut(s) 59, 111, 132, 165, 370, 477, 626, 965
MluNI TGGCCA 1 cut(s) 828
MnlI CCTC 7 cut(s) 5, 97, 561, 725, 837, 905, 1062
Mox20I TGGCCA 1 cut(s) 828
MscI TGGCCA 1 cut(s) 828
MseI TTAA 2 cut(s) 162, 383
MslI CAYNNNNRTG 4 cut(s) 210, 270, 357, 602
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 2 cut(s) 887, 1002
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 316, 949, 1007
NdeII GATC 4 cut(s) 172, 214, 485, 814
NlaIII CATG 4 cut(s) 179, 215, 269, 653
NlaIV GGNNCC 1 cut(s) 701
NmuCI GTSAC 1 cut(s) 653
PagI TCATGA 2 cut(s) 175, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PfeI GAWTC 3 cut(s) 100, 584, 869
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 2 cut(s) 811, 1012
PpuMI RGGWCCY 1 cut(s) 700
Psp5II RGGWCCY 1 cut(s) 700
PspFI CCCAGC 1 cut(s) 677
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 1 cut(s) 700
PspPPI RGGWCCY 1 cut(s) 700
PsrI GAACNNNNNNTAC 2 cut(s) 505, 537
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 981
RsaNI GTAC 1 cut(s) 980
RseI CAYNNNNRTG 4 cut(s) 210, 270, 357, 602
SaqAI TTAA 2 cut(s) 162, 383
SatI GCNGC 2 cut(s) 810, 1011
Sau3AI GATC 4 cut(s) 172, 214, 485, 814
Sau96I GGNCC 1 cut(s) 700
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 5 cut(s) 433, 504, 544, 796, 902
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 4 cut(s) 210, 270, 357, 602
SmlI CTYRAG 2 cut(s) 142, 668
SmoI CTYRAG 2 cut(s) 142, 668
Sse9I AATT 8 cut(s) 59, 111, 132, 165, 370, 477, 626, 965
SsiI CCGC 2 cut(s) 446, 947
SspMI CTAG 2 cut(s) 704, 1047
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 3 cut(s) 503, 838, 1038
TaiI ACGT 2 cut(s) 188, 327
TaqI TCGA 2 cut(s) 498, 507
TasI AATT 8 cut(s) 59, 111, 132, 165, 370, 477, 626, 965
TatI WGTACW 1 cut(s) 979
TfiI GAWTC 3 cut(s) 100, 584, 869
Tru1I TTAA 2 cut(s) 162, 383
Tru9I TTAA 2 cut(s) 162, 383
TscAI CASTG 2 cut(s) 829, 1020
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 2 cut(s) 809, 1010
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 4 cut(s) 200, 288, 586, 627
TspRI CASTG 2 cut(s) 829, 1020
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 2 cut(s) 370, 626
XbaI TCTAGA 1 cut(s) 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 704, 1047
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.