Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016009

Physical Location & Seq

Genomic Coordinates Reverse (-)

4431141 .. 4436737

Gene Structure 5597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGTGCAAAGAGTGTCATTTTCAATCAATTTGTGTTCTTAGACTTCTGATTCAAAGCTGTAAAATTGTTTTGGCAACCTTGGTGAAGAGCAAAGAATTGCGGGATCCGTTCTACGGCATGGAAAATGAGTCAATCATAGATATTGCTGATTCAGGGAGGCAGTGGTACACATTTTGGTACTCTACAACCTTTCAGTGTAAGCTGTCAGGTACTCAGCACCTGGATCTGAATTTCCGTGGAATCAATTACTATGCAGAGGTATATTTGAATGGGCACAAAAAGGACATCCCAAGAGGGATGTTTCAAAGGCATTCTCTAGATGTCACTGATATAGTACGTGACGGTGAAAATTTGCTTGCTGTTGTCGTTTACCCCCCAGATCATCCTGGGAGTATTCCTCCTCAGGGTGGGCAAGGTGGCGATCATGAGATTGGGAAAGATGTGACTACACAATACGTGCAGGGTTGGGATTGGATGTGTCCTATAAGGGATAGAAACACTGGCATATGGGATGAAGTGTCAATTTATGTAACAGGGCCAGTGAAAATATTAGATCCCCACTTGGTTTCATCATTTTATGACAATTACAAGAGGGTGTATTTGCATGCAACGACTGAGTTGGAAAATAGAAGTACCTTGGTTGCCGAGTGTTCTTTGAATATCCAAGTTACAACAGAACTTGAAGGAAACATTTGTTTAGTCGAGCATCTTCAGACTCAGCATCTGTCAATCCCTGCTGGATCGCGGGTGCAATATACATTTCCTGAGCTCTTCTTCTACAAGCCAAATTTATGGTGGCCAAATGGTATGGGAAAGCAAGCCTTGTACAATGTTGTTATTACTGTTGATGTAAAGGGATATGGAGAGTCTGATTTGTGGAGCCAATTATTTGGATTCCGCAAAATCGAGAGCCACATTGATGATGCCACCGGTGGAAGGTTGTTCAAGGTCAATGGTCAGCCTATTTTCATTCGTGGTGGTAATTGGATATTGTCAGATGGCCTCCTACGGCTTTCAGAAAAGCGTTACAAAACAGACATCAAGTTTCATGCAGATATGAATTTTAACATGATCCGATGTTGGGGTGGTGGACTGGCTGAGAGGCCAGAATTTTATTATTACTGTGATATTTATGGCCTGTTGGTCTGGCAAGAATTTTGGATTACTGGAGATGTAGATGGACGAGGTGTCCCGGTATCAAATCCAAACGGTCCACTGGACCATGATCTTTTCTTGCTATGTGCAAGAGATACTGTCAAGCTTCTAAGGAACCATCCAAGTCTTGCTCTTTGGGTGGGAGGAAATGAACAAATCCCACCCGATGACATCAACAAAGCTTTGAAACAGGACCTCAGGCTCCATCCACATTTTGAAAATTCCATAAATGGTAGTGGTGAGTATGTTGAAAATTTGAAGTCAGTGTCAAAGGATCCAAGCCAATATCTGGATGGTACACGCATTTACATACAAGGATCGATGTGGGATGGATTTGCAAATGGAAAGGGGGACTACACTGACGGCCCTTATGAAATCCAAAATCCTGAAGACTTCTTTAAGGATGATTTTTACAAATATGGGTTCAATCCTGAGGTTGGTTCAGTAGGTATGCCCGTTGCAGCTACCATCAGAGCGACAATGCTTCCAGAAGCATGGCAGATCCCTTTGTTCAACAAAGTTTCCGATGATTATGAAGAAGTTCCAAACCCTGTCTGGGAATACCATAAATACATACCTTATTCAAAACCAGGCAAGGTTCATGACCAGATTTTACTCTATGGGTTTCCAAAGGATCTTGATGACTTTTGCTTACAGGCTCAGCTTGCTAACTATATTCAGTATAGAGCTCTACTGGAGGGTTGGACTTCCCGCATGTGGAGTAAATACACTGGTGTTTTGATTTGGAAAACACAGAATCCTTGGACAGGTCTTAGAGGTCAATTTTACGATCATCTTCTTGACCAAACAGCAGGTTTCTATGGCTGTCGCTGTGCTGCAGAGCCAATACACGTCCAACTTAACTTGGCTACTTATTCTATAGAGGTTGTAAATACTACATCAGAGGAATTATCGGACATTGCTATTGAAGCATCAGTGTGGGATCTGGATGGAACATGCCCATACTACAAAGTTCATGAAAATCTGTCAATGCCGCCAAAAAGAACAGTACCGGTTGCTGAGATGAAATATCCAAAATCTAGAAACCCAAAACCTGTGTACTTTCTTCTTCTCAAACTGTATCACAAGTCAAATTTTCGCATTATCTCCAGGAACTTTTACTGGTTGCATCTTTCTGGTGGGGATTACAAGCTGTTAGAACCATACCGAAAGAAAAGAGTTCCACTCAAGATTAAATCCGAGGTCTTCATCAAAGGAACCACCTACGAAATGCACATGAATGTGAAGAACACATCTGCGAAACCACCGCCTAAAACTTTAACCTATCAGAATCATTTCACCCCTAAACTTGGTGATGGTGATTTTGATATCCACTCGGTGGACCCTCAACCTGATGGAGCAGACGAAAAACATGAATTTGGTTTTCTACAGAAGATATACAGGCATTTTGCGAAAGAAACTGATGGTTTGAGGGTTGCTGAAATCAATGGCTCTGATGTTGGTGTTGCTTTCTTCCTTCATTTTTCTGTTCATGGAGTAAAGAAGGACCATAAGGAAGGAGAAGACACAAGAATTCTTCCTGTTCATTACACTGACAACTACTTTTCACTGGTGCCAGGTGAGTCCATGCCCATCAAGATCACTTTTGAGGTCCCTCCTGGTGTGACCCCCCGAGTTACTCTTCAAGGATGGAATTATCATGGTGCCCATAGAGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

945

Amino Acids

108.46

Weight (kDa)

6.08

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_2_N2	PF22666	23 - 170	1.1e-19	Glycosyl hydrolase 2 galactose-binding domain-like
Glyco_hydro_2_N	PF02837	45 - 124	7e-06	Glycosyl hydrolases family 2, sugar binding domain
Glyco_hydro_2	PF00703	181 - 300	8.9e-11	Glycosyl hydrolases family 2
Ig_GlcNase	PF18368	869 - 937	1.9e-09	Exo-beta-D-glucosaminidase Ig-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11250
malus_domestica	MD04G1159300.v1.1
prunus_persica	Prupe.6G279500_v2.0.a1
pyrus_communis	pycom04g14090
rosa_chinensis	RchiOBHm_Chr3g0462771
rosa_laevigata	RLG00000024834
rosa_roxburghii	Rroxscaffold_6G00417220
rosa_rugosa	Rorug03G0059100 Rorug03G0059100
rosa_samantha	Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana	Rw3G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1958
AccB1I	GGYRCC	2 cut(s)	2728, 2819
AccB7I	CCANNNNNTGG	2 cut(s)	1444, 2494
AccII	CGCG	1 cut(s)	745
AciI	CCGC	6 cut(s)	100, 745, 898, 1867, 2150, 2423
AcoI	YGGCCR	1 cut(s)	797
AcuI	CTGAAG	2 cut(s)	695, 1563
AdeI	CACNNNGTG	1 cut(s)	2494
AfaI	GTAC	9 cut(s)	167, 179, 211, 336, 634, 827, 1453, 2166, 2216
AflIII	ACRYGT	1 cut(s)	2005
AgeI	ACCGGT	2 cut(s)	929, 2167
AhdI	GACNNNNNGTC	1 cut(s)	1187
AjiI	CACGTC	1 cut(s)	2008
AjnI	CCWGG	6 cut(s)	219, 385, 1744, 2264, 2731, 2773
AluBI	AGCT	9 cut(s)	57, 202, 769, 1261, 1337, 1619, 1819, 1844, 2308
AluI	AGCT	9 cut(s)	57, 202, 769, 1261, 1337, 1619, 1819, 1844, 2308
Alw21I	GWGCWC	2 cut(s)	771, 1846
AlwNI	CAGNNNCTG	2 cut(s)	220, 724
Ama87I	CYCGRG	1 cut(s)	2787
AoxI	GGCC	6 cut(s)	536, 797, 1000, 1103, 1135, 1519
ApeKI	GCWGC	2 cut(s)	1616, 1991
AsiGI	ACCGGT	2 cut(s)	929, 2167
Asp700I	GAANNNNTTC	2 cut(s)	1695, 2450
AspS9I	GGNCC	8 cut(s)	536, 1211, 1219, 1348, 1520, 2497, 2662, 2767
AsuC2I	CCSGG	1 cut(s)	1193
AsuHPI	GGTGA	7 cut(s)	94, 356, 1406, 2446, 2480, 2486, 2747
AvaI	CYCGRG	1 cut(s)	2787
AvaII	GGWCC	6 cut(s)	1211, 1219, 1348, 2497, 2662, 2767
AxyI	CCTNAGG	3 cut(s)	402, 1352, 1587
BaeGI	GKGCMC	2 cut(s)	276, 2824
BalI	TGGCCA	1 cut(s)	799
BamHI	GGATCC	2 cut(s)	103, 1429
BanI	GGYRCC	2 cut(s)	2728, 2819
BanII	GRGCYC	2 cut(s)	771, 1846
BbsI	GAAGAC	3 cut(s)	1551, 2353, 2685
Bbv12I	GWGCWC	2 cut(s)	771, 1846
BbvI	GCAGC	2 cut(s)	1628, 1978
BceAI	ACGGC	3 cut(s)	130, 1025, 1534
BciT130I	CCWGG	6 cut(s)	221, 387, 1746, 2266, 2733, 2775
BcnI	CCSGG	1 cut(s)	1193
BfaI	CTAG	2 cut(s)	317, 2196
BfmI	CTRYAG	3 cut(s)	1992, 2034, 2543
BfuAI	ACCTGC	1 cut(s)	1958
BisI	GCNGC	3 cut(s)	1617, 1992, 2150
BlpI	GCTNAGC	1 cut(s)	1815
BlsI	GCNGC	3 cut(s)	1618, 1993, 2151
Bme1390I	CCNGG	7 cut(s)	221, 387, 1193, 1746, 2266, 2733, 2775
Bme18I	GGWCC	6 cut(s)	1211, 1219, 1348, 2497, 2662, 2767
BmeRI	GACNNNNNGTC	1 cut(s)	1187
BmeT110I	CYCGRG	1 cut(s)	2787
BmgBI	CACGTC	1 cut(s)	2008
BmgT120I	GGNCC	8 cut(s)	536, 1211, 1219, 1348, 1520, 2497, 2662, 2767
BmrFI	CCNGG	7 cut(s)	221, 387, 1193, 1746, 2266, 2733, 2775
BmsI	GCATC	5 cut(s)	715, 730, 913, 2096, 2293
BpiI	GAAGAC	3 cut(s)	1551, 2353, 2685
BplI	GAGNNNNNCTC	4 cut(s)	382, 414, 2325, 2357
BpmI	CTGGAG	3 cut(s)	1188, 1871, 2248
Bpu10I	CCTNAGC	1 cut(s)	765
Bpu1102I	GCTNAGC	1 cut(s)	1815
BpuEI	CTTGAG	1 cut(s)	2327
BpuMI	CCSGG	1 cut(s)	1193
Bsa29I	ATCGAT	1 cut(s)	1475
BsaAI	YACGTR	2 cut(s)	338, 457
BsaJI	CCNNGG	6 cut(s)	78, 235, 386, 636, 1916, 2355
BsaWI	WCCGGW	2 cut(s)	929, 2167
Bse118I	RCCGGY	2 cut(s)	929, 2167
Bse1I	ACTGG	9 cut(s)	505, 539, 1098, 1171, 1221, 1854, 1891, 2282, 2730
Bse21I	CCTNAGG	3 cut(s)	402, 1352, 1587
Bse3DI	GCAATG	1 cut(s)	2073
BseBI	CCWGG	6 cut(s)	221, 387, 1746, 2266, 2733, 2775
BseCI	ATCGAT	1 cut(s)	1475
BseDI	CCNNGG	6 cut(s)	78, 235, 386, 636, 1916, 2355
BseMI	GCAATG	1 cut(s)	2073
BseNI	ACTGG	9 cut(s)	505, 539, 1098, 1171, 1221, 1854, 1891, 2282, 2730
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	2 cut(s)	276, 2824
BseXI	GCAGC	2 cut(s)	1628, 1978
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	6 cut(s)	538, 799, 1002, 1105, 1137, 1521
BshNI	GGYRCC	2 cut(s)	2728, 2819
BshTI	ACCGGT	2 cut(s)	929, 2167
BshVI	ATCGAT	1 cut(s)	1475
BsiHKAI	GWGCWC	2 cut(s)	771, 1846
BsiHKCI	CYCGRG	1 cut(s)	2787
BsiSI	CCGG	3 cut(s)	930, 1193, 2168
BslFI	GGGAC	3 cut(s)	1175, 1520, 2753
BsmFI	GGGAC	3 cut(s)	1175, 1520, 2753
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	6 cut(s)	538, 799, 1002, 1105, 1137, 1521
BsoBI	CYCGRG	1 cut(s)	2787
Bsp1286I	GDGCHC	4 cut(s)	276, 771, 1846, 2824
Bsp1407I	TGTACA	1 cut(s)	825
Bsp1720I	GCTNAGC	1 cut(s)	1815
BspACI	CCGC	6 cut(s)	100, 745, 898, 1867, 2150, 2423
BspANI	GGCC	6 cut(s)	538, 799, 1002, 1105, 1137, 1521
BspDI	ATCGAT	1 cut(s)	1475
BspFNI	CGCG	1 cut(s)	745
BspHI	TCATGA	3 cut(s)	424, 1756, 2131
BspMAI	CTGCAG	1 cut(s)	1996
BspMI	ACCTGC	1 cut(s)	1958
BspQI	GCTCTTC	2 cut(s)	80, 776
BspT107I	GGYRCC	2 cut(s)	2728, 2819
BsrDI	GCAATG	1 cut(s)	2073
BsrFI	RCCGGY	2 cut(s)	929, 2167
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	9 cut(s)	505, 539, 1098, 1171, 1221, 1854, 1891, 2282, 2730
BssAI	RCCGGY	2 cut(s)	929, 2167
BssECI	CCNNGG	6 cut(s)	78, 235, 386, 636, 1916, 2355
BssT1I	CCWWGG	3 cut(s)	78, 636, 1916
Bst2UI	CCWGG	6 cut(s)	221, 387, 1746, 2266, 2733, 2775
Bst4CI	ACNGT	7 cut(s)	344, 844, 1124, 1211, 1255, 2164, 2235
Bst6I	CTCTTC	3 cut(s)	80, 776, 2802
BstAUI	TGTACA	1 cut(s)	825
BstBAI	YACGTR	2 cut(s)	338, 457
BstC8I	GCNNGC	4 cut(s)	357, 606, 819, 1821
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	1920
BstFNI	CGCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	2 cut(s)	1820, 2084
BstNI	CCWGG	6 cut(s)	221, 387, 1746, 2266, 2733, 2775
BstNSI	RCATGY	3 cut(s)	608, 1873, 2115
BstSCI	CCNGG	7 cut(s)	219, 385, 1191, 1744, 2264, 2731, 2773
BstSFI	CTRYAG	3 cut(s)	1992, 2034, 2543
BstSLI	GKGCMC	2 cut(s)	276, 2824
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	2 cut(s)	1628, 1978
BstV2I	GAAGAC	3 cut(s)	1551, 2353, 2685
BstX2I	RGATCY	7 cut(s)	103, 223, 553, 1429, 1656, 1789, 2098
BstXI	CCANNNNNNTGG	3 cut(s)	792, 890, 1650
BstYI	RGATCY	7 cut(s)	103, 223, 553, 1429, 1656, 1789, 2098
Bsu15I	ATCGAT	1 cut(s)	1475
Bsu36I	CCTNAGG	3 cut(s)	402, 1352, 1587
BsuRI	GGCC	6 cut(s)	538, 799, 1002, 1105, 1137, 1521
BsuTUI	ATCGAT	1 cut(s)	1475
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	2008
BtsI	GCAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	1958
Cac8I	GCNNGC	4 cut(s)	357, 606, 819, 1821
CaiI	CAGNNNCTG	2 cut(s)	220, 724
CciI	TCATGA	3 cut(s)	424, 1756, 2131
Cfr10I	RCCGGY	2 cut(s)	929, 2167
Cfr13I	GGNCC	8 cut(s)	536, 1211, 1219, 1348, 1520, 2497, 2662, 2767
ClaI	ATCGAT	1 cut(s)	1475
Csp6I	GTAC	9 cut(s)	166, 178, 210, 335, 633, 826, 1452, 2165, 2215
CspAI	ACCGGT	2 cut(s)	929, 2167
CviQI	GTAC	9 cut(s)	166, 178, 210, 335, 633, 826, 1452, 2165, 2215
DraIII	CACNNNGTG	1 cut(s)	2494
DriI	GACNNNNNGTC	1 cut(s)	1187
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	3 cut(s)	80, 776, 2802
Eam1105I	GACNNNNNGTC	1 cut(s)	1187
EarI	CTCTTC	3 cut(s)	80, 776, 2802
Ecl136II	GAGCTC	2 cut(s)	769, 1844
Eco130I	CCWWGG	3 cut(s)	78, 636, 1916
Eco24I	GRGCYC	2 cut(s)	771, 1846
Eco32I	GATATC	1 cut(s)	2485
Eco47I	GGWCC	6 cut(s)	1211, 1219, 1348, 2497, 2662, 2767
Eco53kI	GAGCTC	2 cut(s)	769, 1844
Eco57I	CTGAAG	2 cut(s)	695, 1563
Eco81I	CCTNAGG	3 cut(s)	402, 1352, 1587
Eco88I	CYCGRG	1 cut(s)	2787
EcoICRI	GAGCTC	2 cut(s)	769, 1844
EcoNI	CCTNNNNNAGG	1 cut(s)	1920
EcoO109I	RGGNCCY	2 cut(s)	1348, 2767
EcoRI	GAATTC	1 cut(s)	2688
EcoRII	CCWGG	6 cut(s)	219, 385, 1744, 2264, 2731, 2773
EcoRV	GATATC	1 cut(s)	2485
EcoT14I	CCWWGG	3 cut(s)	78, 636, 1916
EcoT38I	GRGCYC	2 cut(s)	771, 1846
ErhI	CCWWGG	3 cut(s)	78, 636, 1916
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	3 cut(s)	1175, 1520, 2753
FauI	CCCGC	3 cut(s)	93, 738, 1874
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	1617, 1992, 2150
FriOI	GRGCYC	2 cut(s)	771, 1846
Fsp4HI	GCNGC	3 cut(s)	1617, 1992, 2150
FspBI	CTAG	2 cut(s)	317, 2196
GluI	GCNGC	3 cut(s)	1617, 1992, 2150
GsuI	CTGGAG	3 cut(s)	1188, 1871, 2248
HaeIII	GGCC	6 cut(s)	538, 799, 1002, 1105, 1137, 1521
HapII	CCGG	3 cut(s)	930, 1193, 2168
HindIII	AAGCTT	2 cut(s)	1259, 1335
HpaII	CCGG	3 cut(s)	930, 1193, 2168
HphI	GGTGA	7 cut(s)	94, 356, 1406, 2446, 2480, 2486, 2747
Hpy166II	GTNNAC	7 cut(s)	168, 370, 1091, 1214, 1454, 2215, 2497
Hpy8I	GTNNAC	7 cut(s)	168, 370, 1091, 1214, 1454, 2215, 2497
HpyAV	CCTTC	5 cut(s)	677, 930, 2642, 2653, 2666
HpyCH4III	ACNGT	7 cut(s)	344, 844, 1124, 1211, 1255, 2164, 2235
HpyCH4IV	ACGT	3 cut(s)	337, 456, 2007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1820, 2084
HpySE526I	ACGT	3 cut(s)	337, 456, 2007
LguI	GCTCTTC	2 cut(s)	80, 776
LmnI	GCTCC	3 cut(s)	879, 1362, 2513
Lsp1109I	GCAGC	2 cut(s)	1628, 1978
LweI	GCATC	5 cut(s)	715, 730, 913, 2096, 2293
MaeI	CTAG	2 cut(s)	317, 2196
MaeII	ACGT	3 cut(s)	337, 456, 2007
MaeIII	GTNAC	8 cut(s)	322, 338, 442, 529, 667, 1025, 2779, 2791
MflI	RGATCY	7 cut(s)	103, 223, 553, 1429, 1656, 1789, 2098
MhlI	GDGCHC	4 cut(s)	276, 771, 1846, 2824
MlsI	TGGCCA	1 cut(s)	799
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	5 cut(s)	137, 709, 875, 2747, 2838
MmeI	TCCRAC	3 cut(s)	600, 1838, 2035
Mox20I	TGGCCA	1 cut(s)	799
MroXI	GAANNNNTTC	2 cut(s)	1695, 2450
MscI	TGGCCA	1 cut(s)	799
MseI	TTAA	5 cut(s)	1065, 1554, 2016, 2349, 2435
MslI	CAYNNNNRTG	4 cut(s)	918, 2092, 2394, 2396
Msp20I	TGGCCA	1 cut(s)	799
MspI	CCGG	3 cut(s)	930, 1193, 2168
MspR9I	CCNGG	7 cut(s)	221, 387, 1193, 1746, 2266, 2733, 2775
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	6 cut(s)	221, 387, 1746, 2266, 2733, 2775
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	2 cut(s)	1820, 2084
NciI	CCSGG	1 cut(s)	1193
NdeI	CATATG	1 cut(s)	506
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	4 cut(s)	322, 338, 442, 2779
NspI	RCATGY	3 cut(s)	608, 1873, 2115
PaeI	GCATGC	1 cut(s)	608
PagI	TCATGA	3 cut(s)	424, 1756, 2131
PciSI	GCTCTTC	2 cut(s)	80, 776
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	1695, 2450
PfeI	GAWTC	6 cut(s)	49, 149, 240, 894, 1912, 2446
PflMI	CCANNNNNTGG	2 cut(s)	1444, 2494
PfoI	TCCNGGA	1 cut(s)	2264
PinAI	ACCGGT	2 cut(s)	929, 2167
PkrI	GCNGC	3 cut(s)	1618, 1993, 2151
PleI	GAGTC	5 cut(s)	136, 709, 874, 2746, 2837
PpsI	GAGTC	5 cut(s)	136, 709, 874, 2746, 2837
Ppu21I	YACGTR	2 cut(s)	338, 457
PpuMI	RGGWCCY	2 cut(s)	1348, 2767
Psp124BI	GAGCTC	2 cut(s)	771, 1846
Psp5II	RGGWCCY	2 cut(s)	1348, 2767
Psp6I	CCWGG	6 cut(s)	219, 385, 1744, 2264, 2731, 2773
PspGI	CCWGG	6 cut(s)	219, 385, 1744, 2264, 2731, 2773
PspPI	GGNCC	8 cut(s)	536, 1211, 1219, 1348, 1520, 2497, 2662, 2767
PspPPI	RGGWCCY	2 cut(s)	1348, 2767
PstI	CTGCAG	1 cut(s)	1996
PstNI	CAGNNNCTG	2 cut(s)	220, 724
PsuI	RGATCY	7 cut(s)	103, 223, 553, 1429, 1656, 1789, 2098
RsaI	GTAC	9 cut(s)	167, 179, 211, 336, 634, 827, 1453, 2166, 2216
RsaNI	GTAC	9 cut(s)	166, 178, 210, 335, 633, 826, 1452, 2165, 2215
RseI	CAYNNNNRTG	4 cut(s)	918, 2092, 2394, 2396
SacI	GAGCTC	2 cut(s)	771, 1846
SapI	GCTCTTC	2 cut(s)	80, 776
SaqAI	TTAA	5 cut(s)	1065, 1554, 2016, 2349, 2435
SatI	GCNGC	3 cut(s)	1617, 1992, 2150
Sau96I	GGNCC	8 cut(s)	536, 1211, 1219, 1348, 1520, 2497, 2662, 2767
SchI	GAGTC	5 cut(s)	137, 709, 875, 2747, 2838
ScrFI	CCNGG	7 cut(s)	221, 387, 1193, 1746, 2266, 2733, 2775
SduI	GDGCHC	4 cut(s)	276, 771, 1846, 2824
SfaNI	GCATC	5 cut(s)	715, 730, 913, 2096, 2293
SfcI	CTRYAG	3 cut(s)	1992, 2034, 2543
SgrAI	CRCCGGYG	1 cut(s)	929
SinI	GGWCC	6 cut(s)	1211, 1219, 1348, 2497, 2662, 2767
SmiMI	CAYNNNNRTG	4 cut(s)	918, 2092, 2394, 2396
SmlI	CTYRAG	1 cut(s)	2342
SmoI	CTYRAG	1 cut(s)	2342
SphI	GCATGC	1 cut(s)	608
SsiI	CCGC	6 cut(s)	100, 745, 898, 1867, 2150, 2423
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	2 cut(s)	317, 2196
SstI	GAGCTC	2 cut(s)	771, 1846
StyD4I	CCNGG	7 cut(s)	219, 385, 1191, 1744, 2264, 2731, 2773
StyI	CCWWGG	3 cut(s)	78, 636, 1916
TaaI	ACNGT	7 cut(s)	344, 844, 1124, 1211, 1255, 2164, 2235
TaiI	ACGT	3 cut(s)	340, 459, 2010
TaqI	TCGA	3 cut(s)	702, 906, 1475
TatI	WGTACW	2 cut(s)	825, 2214
TauI	GCSGC	1 cut(s)	2152
TfiI	GAWTC	6 cut(s)	49, 149, 240, 894, 1912, 2446
Tru1I	TTAA	5 cut(s)	1065, 1554, 2016, 2349, 2435
Tru9I	TTAA	5 cut(s)	1065, 1554, 2016, 2349, 2435
TseFI	GTSAC	4 cut(s)	322, 338, 442, 2779
TseI	GCWGC	2 cut(s)	1616, 1991
Tsp45I	GTSAC	4 cut(s)	322, 338, 442, 2779
TspGWI	ACGGA	2 cut(s)	96, 224
Van91I	CCANNNNNTGG	2 cut(s)	1444, 2494
VpaK11BI	GGWCC	6 cut(s)	1211, 1219, 1348, 2497, 2662, 2767
XagI	CCTNNNNNAGG	1 cut(s)	1920
XbaI	TCTAGA	2 cut(s)	316, 2195
XceI	RCATGY	3 cut(s)	608, 1873, 2115
XcmI	CCANNNNNNNNNTGG	3 cut(s)	792, 1445, 1707
XmnI	GAANNNNTTC	2 cut(s)	1695, 2450
XspI	CTAG	2 cut(s)	317, 2196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.