Rh3CG123800

Phosphoinositide phosphatase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
10034532 .. 10039381
4850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG123800.1

Sequence Viewer

Length: 1350 bp
ATGGACGGTGGGTCTTCTTCTTCTTCTTCTTCATCTTCCGGCGGAAACTTCAAGCTCTACGAGAAGTTGGAGTTGCAGGAGTTTCCGGACAAGTTCGTCGTCAAATCAGTCGAAGCTCCCGATCAAGGCTTCGTGATCGCCCGCCGCGACGGGACTATCGAACCGCTTGACGGTGATTCTTCTTCTGCAAGTCCGTCCAAAACGTCGACGATATATGGAGTCGTCGGAACGATCAGATTGCTTGCAGGAAATTACTTGCTTGTAATAACTTCTCGGATAGAAGTTGGGAACTATCTTGGCTTCCCTGTTTACCGGGTGACTTCTATGAAGTTTCTTTCCTGCAATGAGGTGTTGAAGCTCTCAACTGCTCAAGAAATTCGGGGTTCAATTCCACTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTTAAAATTATTGATCATGAGCAGACGTCAAATGTAGTGGAGCGACATTTTCATGATCTTTTCCAAAGATATGGAGAGACAATAGCAGTAGACTTGACTGATAAACATGGTGATGAAGGTGAACTAAGCAAGGCATTTGCTAATGAGACGCAAAATCTGCCAAACGTGAGATACGTTCCATTTGACTTCCATCATATATGTGGCAACTCAAATTTTGAAAACTTAAAGGTCTTATACGAGCAACTATCAGAGCTACTTGAAAACCAAGGATACTTTCTCGTTGATGCGGAAGGAAACATACTGGAGGACCAGAAAGGAATTGTCAGATCTAACTGCATCGACTGTCTCGATAGAACAAATGTTACCCAGAGTTACTTGGCTCAGAAGTGTCTGGATGCCCAGTTGCAGAGGATGGGAGTGCTTGATTCAACTGAGTCCATTTCTGTGTTTGATGAAGAGTATCAAAAATTCCGAACATTGTGGGCTGAGCATGGTGATGAGATAAGCCTTGAGTATGCTGGGACTTACGCCTTGAAAGGGGACCTAGTTAGGTATGGAAAACAGACATTTGGAGGAATGATTAGAGATGGGATGAGTGCTCTTTCAAGATATTATTTGAATAACTTTCAGGATGGTATTCGGCAGGATGCTGCTGATCTTATCAGTGGCCACTATACTGTTAGGAGGGATGGTTCAGTACGCCAGATGGAATCCTTTTCTTATCTACCGGTGGCATCAGCTTTGCTAATCGGAGGTTTGACGCTGACATCTTTCACACTTCAGCAAGCGGGGCGAAACGCCCACCAATTTATGAGTTCTGTACTTTGGGCTGGAATGACTGCCGGATTAGCAGCAGTGGTGAAAGCTAATGGAAGACAGTTCTGTTCTAGACCTCGCTTGTGCAGACTTGTGTAA

Protein Analysis

449

Amino Acids

50.05

Weight (kDa)

5.33

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 72 - 117 3.2e-06 SacI homology domain
Syja_N PF02383 125 - 212 8.1e-25 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51830
fragaria_vesca FvH4_6g11250
malus_domestica MD04G1159300.v1.1
prunus_persica Prupe.6G279500_v2.0.a1
pyrus_communis pycom04g14090
rosa_chinensis RchiOBHm_Chr3g0462771
rosa_laevigata RLG00000024834
rosa_roxburghii Rroxscaffold_6G00417220
rosa_rugosa Rorug03G0059100 Rorug03G0059100
rosa_samantha Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana Rw3G009920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AatII GACGTC 1 cut(s) 464
AccI GTMKAC 2 cut(s) 206, 525
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 6 cut(s) 42, 142, 145, 164, 722, 1223
AcoI YGGCCR 1 cut(s) 1102
AcsI RAATTY 3 cut(s) 375, 646, 902
AcuI CTGAAG 1 cut(s) 1199
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 2 cut(s) 1134, 1257
AfiI CCNNNNNNNGG 3 cut(s) 125, 170, 972
AgeI ACCGGT 1 cut(s) 1162
AgsI TTSAA 9 cut(s) 52, 355, 387, 653, 695, 864, 970, 1041, 1054
AhdI GACNNNNNGTC 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AloI GAACNNNNNNTCC 2 cut(s) 1111, 1143
AluBI AGCT 7 cut(s) 55, 116, 358, 423, 688, 1175, 1301
AluI AGCT 7 cut(s) 55, 116, 358, 423, 688, 1175, 1301
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 3 cut(s) 506, 575, 785
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 1 cut(s) 1102
ApeKI GCWGC 2 cut(s) 1085, 1286
ApoI RAATTY 3 cut(s) 375, 646, 902
AsiGI ACCGGT 1 cut(s) 1162
AspS9I GGNCC 2 cut(s) 742, 976
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 6 cut(s) 185, 328, 557, 566, 941, 1306
AvaII GGWCC 2 cut(s) 742, 976
BalI TGGCCA 1 cut(s) 1104
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
BbsI GAAGAC 2 cut(s) 6, 1315
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 2 cut(s) 1072, 1298
BccI CCATC 6 cut(s) 633, 841, 1016, 1061, 1118, 1135
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 506, 575, 785
BfaI CTAG 2 cut(s) 980, 1323
BfuI GTATCC 1 cut(s) 698
BglII AGATCT 1 cut(s) 761
BisI GCNGC 3 cut(s) 145, 1086, 1287
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 3 cut(s) 146, 1087, 1288
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 2 cut(s) 742, 976
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 742, 976
BmiI GGNNCC 1 cut(s) 977
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 829
BmsI GCATC 5 cut(s) 709, 780, 820, 1072, 1178
BmuI ACTGGG 1 cut(s) 829
BpiI GAAGAC 2 cut(s) 6, 1315
BpmI CTGGAG 1 cut(s) 758
Bpu1102I GCTNAGC 1 cut(s) 921
BpuEI CTTGAG 3 cut(s) 354, 439, 965
BpuMI CCSGG 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 700
BsaWI WCCGGW 2 cut(s) 85, 1162
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 170, 972
Bse118I RCCGGY 1 cut(s) 1162
Bse1I ACTGG 2 cut(s) 741, 835
Bse3DI GCAATG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 6 cut(s) 835, 852, 1032, 1072, 1087, 1129
BseLI CCNNNNNNNGG 3 cut(s) 125, 170, 972
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 830, 858, 912
BseNI ACTGG 2 cut(s) 741, 835
BseXI GCAGC 2 cut(s) 1072, 1298
BseYI CCCAGC 1 cut(s) 953
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 1104
BshTI ACCGGT 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 5 cut(s) 39, 86, 313, 1163, 1278
BslFI GGGAC 3 cut(s) 166, 970, 989
BslI CCNNNNNNNGG 3 cut(s) 125, 170, 972
BsmAI GTCTC 3 cut(s) 506, 575, 785
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 3 cut(s) 166, 970, 989
BsnI GGCC 1 cut(s) 1104
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
Bsp1720I GCTNAGC 1 cut(s) 921
BspACI CCGC 6 cut(s) 42, 142, 145, 164, 722, 1223
BspANI GGCC 1 cut(s) 1104
BspCNI CTCAG 3 cut(s) 829, 859, 913
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 2 cut(s) 451, 487
BspLI GGNNCC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 1162
BsrI ACTGG 2 cut(s) 741, 835
BssAI RCCGGY 1 cut(s) 1162
BssECI CCNNGG 1 cut(s) 700
BssMI GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 700
Bst4CI ACNGT 5 cut(s) 8, 173, 779, 1114, 1314
Bst6I CTCTTC 1 cut(s) 885
BstACI GRCGYC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 592
BstC8I GCNNGC 3 cut(s) 142, 243, 1221
BstDEI CTNAG 4 cut(s) 560, 816, 867, 921
BstF5I GGATG 6 cut(s) 835, 852, 1032, 1072, 1087, 1129
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 7 cut(s) 124, 138, 234, 451, 493, 764, 1093
BstMAI GTCTC 3 cut(s) 506, 575, 785
BstMBI GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 592, 1225, 1283
BstSCI CCNGG 1 cut(s) 312
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 1072, 1298
BstV2I GAAGAC 2 cut(s) 6, 1315
BstX2I RGATCY 1 cut(s) 761
BstXI CCANNNNNNTGG 2 cut(s) 399, 506
BstYI RGATCY 1 cut(s) 761
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 1 cut(s) 1104
BtsCI GGATG 6 cut(s) 835, 852, 1032, 1072, 1087, 1129
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 2 cut(s) 1105, 1296
Cac8I GCNNGC 3 cut(s) 142, 243, 1221
CciI TCATGA 2 cut(s) 451, 487
Cfr10I RCCGGY 1 cut(s) 1162
Cfr13I GGNCC 2 cut(s) 742, 976
CseI GACGC 2 cut(s) 592, 1204
Csp6I GTAC 2 cut(s) 1133, 1256
CspAI ACCGGT 1 cut(s) 1162
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 4 cut(s) 452, 488, 542, 926
CviQI GTAC 2 cut(s) 1133, 1256
DdeI CTNAG 4 cut(s) 560, 816, 867, 921
DpnI GATC 7 cut(s) 123, 137, 233, 450, 492, 763, 1092
DpnII GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
DrdI GACNNNNNNGTC 1 cut(s) 95
DriI GACNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 1102
Eam1104I CTCTTC 1 cut(s) 885
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 885
EciI GGCGGA 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 742, 976
Eco57I CTGAAG 1 cut(s) 1199
EcoO109I RGGNCCY 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 4 cut(s) 455, 491, 545, 929
FaqI GGGAC 3 cut(s) 166, 970, 989
FatI CATG 4 cut(s) 451, 487, 541, 925
FauI CCCGC 2 cut(s) 149, 1216
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 206, 525
Fnu4HI GCNGC 3 cut(s) 145, 1086, 1287
FokI GGATG 6 cut(s) 842, 859, 1039, 1079, 1094, 1136
Fsp4HI GCNGC 3 cut(s) 145, 1086, 1287
FspBI CTAG 2 cut(s) 980, 1323
GluI GCNGC 3 cut(s) 145, 1086, 1287
GsaI CCCAGC 1 cut(s) 957
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 1 cut(s) 1104
HapII CCGG 5 cut(s) 39, 86, 313, 1163, 1278
HgaI GACGC 2 cut(s) 592, 1204
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 4 cut(s) 455, 491, 545, 929
HincII GTYRAC 2 cut(s) 207, 415
HindII GTYRAC 2 cut(s) 207, 415
HinfI GANTC 5 cut(s) 176, 219, 860, 869, 1145
HpaII CCGG 5 cut(s) 39, 86, 313, 1163, 1278
HphI GGTGA 6 cut(s) 185, 328, 557, 566, 941, 1306
Hpy166II GTNNAC 5 cut(s) 207, 310, 415, 526, 557
Hpy188I TCNGA 8 cut(s) 227, 236, 276, 685, 761, 819, 908, 1187
Hpy8I GTNNAC 5 cut(s) 207, 310, 415, 526, 557
Hpy99I CGWCG 5 cut(s) 101, 152, 208, 211, 227
HpyAV CCTTC 2 cut(s) 545, 719
HpyCH4III ACNGT 5 cut(s) 8, 173, 779, 1114, 1314
HpyCH4IV ACGT 4 cut(s) 203, 461, 600, 609
HpyCH4V TGCA 7 cut(s) 76, 188, 245, 342, 771, 841, 1338
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 1225, 1283
HpyF3I CTNAG 4 cut(s) 560, 816, 867, 921
HpySE526I ACGT 4 cut(s) 203, 461, 600, 609
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 4 cut(s) 455, 491, 545, 929
Kpn2I TCCGGA 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
LmnI GCTCC 3 cut(s) 121, 403, 475
Lsp1109I GCAGC 2 cut(s) 1072, 1298
LweI GCATC 5 cut(s) 709, 780, 820, 1072, 1178
MaeI CTAG 2 cut(s) 980, 1323
MaeII ACGT 4 cut(s) 203, 461, 600, 609
MaeIII GTNAC 3 cut(s) 316, 796, 806
MalI GATC 7 cut(s) 123, 137, 233, 450, 492, 763, 1092
MboI GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 1036
MlsI TGGCCA 1 cut(s) 1104
MluCI AATT 9 cut(s) 250, 375, 387, 408, 441, 646, 753, 902, 1241
MluNI TGGCCA 1 cut(s) 1104
MlyI GAGTC 2 cut(s) 228, 878
MmeI TCCRAC 2 cut(s) 48, 205
MnlI CCTC 7 cut(s) 340, 733, 837, 1001, 1113, 1181, 1338
Mox20I TGGCCA 1 cut(s) 1104
MroI TCCGGA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 1104
MseI TTAA 2 cut(s) 438, 659
MslI CAYNNNNRTG 5 cut(s) 486, 546, 633, 878, 930
Msp20I TGGCCA 1 cut(s) 1104
MspI CCGG 5 cut(s) 39, 86, 313, 1163, 1278
MspR9I CCNGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 592, 1225, 1283
NciI CCSGG 1 cut(s) 314
NdeII GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
NlaIII CATG 4 cut(s) 455, 491, 545, 929
NlaIV GGNNCC 1 cut(s) 977
NmuCI GTSAC 1 cut(s) 316
PagI TCATGA 2 cut(s) 451, 487
PcsI WCGNNNNNNNCGW 5 cut(s) 117, 144, 156, 606, 780
PfeI GAWTC 3 cut(s) 176, 860, 1145
PinAI ACCGGT 1 cut(s) 1162
PkrI GCNGC 3 cut(s) 146, 1087, 1288
PleI GAGTC 2 cut(s) 227, 877
PpsI GAGTC 2 cut(s) 227, 877
PpuMI RGGWCCY 1 cut(s) 976
Psp5II RGGWCCY 1 cut(s) 976
PspFI CCCAGC 1 cut(s) 953
PspN4I GGNNCC 1 cut(s) 977
PspPI GGNCC 2 cut(s) 742, 976
PspPPI RGGWCCY 1 cut(s) 976
PsrI GAACNNNNNNTAC 2 cut(s) 781, 813
PsuI RGATCY 1 cut(s) 761
RsaI GTAC 2 cut(s) 1134, 1257
RsaNI GTAC 2 cut(s) 1133, 1256
RseI CAYNNNNRTG 5 cut(s) 486, 546, 633, 878, 930
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 438, 659
SatI GCNGC 3 cut(s) 145, 1086, 1287
Sau3AI GATC 7 cut(s) 121, 135, 231, 448, 490, 761, 1090
Sau96I GGNCC 2 cut(s) 742, 976
SchI GAGTC 2 cut(s) 228, 878
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 5 cut(s) 709, 780, 820, 1072, 1178
SgrDI CGTCGACG 1 cut(s) 205
SinI GGWCC 2 cut(s) 742, 976
SmiMI CAYNNNNRTG 5 cut(s) 486, 546, 633, 878, 930
SmlI CTYRAG 3 cut(s) 369, 418, 944
SmoI CTYRAG 3 cut(s) 369, 418, 944
Sse9I AATT 9 cut(s) 250, 375, 387, 408, 441, 646, 753, 902, 1241
SsiI CCGC 6 cut(s) 42, 142, 145, 164, 722, 1223
SspMI CTAG 2 cut(s) 980, 1323
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 5 cut(s) 8, 173, 779, 1114, 1314
TaiI ACGT 4 cut(s) 206, 464, 603, 612
TaqI TCGA 5 cut(s) 111, 159, 206, 774, 783
TasI AATT 9 cut(s) 250, 375, 387, 408, 441, 646, 753, 902, 1241
TatI WGTACW 1 cut(s) 1255
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 3 cut(s) 176, 860, 1145
Tru1I TTAA 2 cut(s) 438, 659
Tru9I TTAA 2 cut(s) 438, 659
TscAI CASTG 2 cut(s) 1105, 1296
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 1085, 1286
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 5 cut(s) 21, 341, 476, 564, 903
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 1105, 1296
VpaK11BI GGWCC 2 cut(s) 742, 976
XapI RAATTY 3 cut(s) 375, 646, 902
XbaI TCTAGA 1 cut(s) 1322
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 2 cut(s) 206, 525
XspI CTAG 2 cut(s) 980, 1323
ZraI GACGTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.