Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0016009

Physical Location & Seq

Genomic Coordinates Reverse (-)

17004396 .. 17007827

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14090.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTGTTCCTTAACCTACATTTAAGCTTCCAGACTGCACAGCTAAAGCTAAAAGGCTCACCTTCTACACTGACAATAGTCTCAAGGAGGTGTACCAGACGTCTAGGGACAAGAATGTGGAGAAGAGGAGCGAACCTTGATGGAGATGTAGCTAATTTTATTGAAACTGAGCAATTGGTGGAGATTGAAGGTTTCCAGTCCGCATTATTGCAGATTCGAGGTTCAATTCCGCTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACGACTTAGAATTATTGATCATGAGCAGACGTCAAATGTTGTGGAGCGCCATTTTTTTGATCTTTCCCAAAGATATGGAGAGACAATGGCAGTAGACCTAACTGATAAACATGGTGATGAAGGTCAACTAAGCACGGCATTTTCTGCTGAAATGAAAAATCTACCAAACGTGAGATACGTTTCATTTGACTTTCATCATGTATGTGGTAACTCAAACTTTGAAAACGTAAAGTTTCTGTATGAGCAGATCTCAGAGCAATTTGAGAAGCAAGGATACTTCCTCGTAGATGCGAAAGGCAACATACTGGAGGAGCAGAAAGGAATTGTCAGAACAAACTGCATTGATTGCCTTGATAGAACAAATGTTACACAGAGTTACTTGGCCCAGAAGTCTCTAGATGCACAGTTGCAAAGAACTGGAGTGCTGGATTCTTCTGAAAGCATTTCCATGTTTGCTGAAGATTATCAAACATTTAGAGCATTGTGGGCTGAGCAAGGCGACGAGATAAGCCTTGAGTATGCTGGCACTTATGCCCTGAAAGGGGACCTGGTTAGATATGGGAAGCAGACATTTGGAGGAATAATCAAAGATGGGATGAGTGCTCTTTCAAGATATTATTTGAATAACTTTCAGGATGGCATTCGGCAGGATGCTATGGATCTTATCAGTGGCCACTATACAGTTAGAAGGGATACTTCACCATTCCGGGCTGAATCTTTTTCTTTTCTACCGGTGGCATCTGCTTTGCTAATTGGAGGGTTGACACTGACATCCGTCACACTTCAGCAAGCTGGTCGAAATGCCCAGCAATATATGTCTTCTGTTCTTTTGGCTGGAGTGACTGCTGGAGTAGCGGCAGTGGTGAAAGCTAACGGAAGGCAATTCTGTTCGAGACCTCGCTTGTGCAGACTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

396

Amino Acids

44.48

Weight (kDa)

6.41

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11250
malus_domestica	MD04G1159300.v1.1
prunus_persica	Prupe.6G279500_v2.0.a1
pyrus_communis	pycom04g14090
rosa_chinensis	RchiOBHm_Chr3g0462771
rosa_laevigata	RLG00000024834
rosa_roxburghii	Rroxscaffold_6G00417220
rosa_rugosa	Rorug03G0059100 Rorug03G0059100
rosa_samantha	Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana	Rw3G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	103, 302
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	3 cut(s)	201, 230, 1124
AclWI	GGATC	1 cut(s)	936
AcoI	YGGCCR	1 cut(s)	940
AcuI	CTGAAG	2 cut(s)	747, 1037
AcyI	GRCGYC	2 cut(s)	100, 299
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	810, 811
AgeI	ACCGGT	1 cut(s)	1000
AgsI	TTSAA	6 cut(s)	164, 188, 225, 491, 879, 892
AjnI	CCWGG	1 cut(s)	816
AluBI	AGCT	7 cut(s)	27, 43, 49, 152, 261, 1061, 1139
AluI	AGCT	7 cut(s)	27, 43, 49, 152, 261, 1061, 1139
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	4 cut(s)	85, 344, 666, 1156
AlwI	GGATC	1 cut(s)	936
AoxI	GGCC	2 cut(s)	651, 940
AsiGI	ACCGGT	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	652, 814
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	4 cut(s)	51, 395, 960, 1144
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	942
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	1 cut(s)	1080
Bbv12I	GWGCWC	1 cut(s)	874
BccI	CCATC	3 cut(s)	134, 854, 899
BceAI	ACGGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	2 cut(s)	1046, 1080
BciT130I	CCWGG	1 cut(s)	818
BciVI	GTATCC	2 cut(s)	536, 955
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	4 cut(s)	85, 344, 666, 1156
BfaI	CTAG	2 cut(s)	104, 665
BfoI	RGCGCY	1 cut(s)	319
BfuI	GTATCC	2 cut(s)	536, 955
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	1 cut(s)	1125
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	1126
Bme1390I	CCNGG	2 cut(s)	818, 977
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	652, 814
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	818, 977
BmsI	GCATC	4 cut(s)	547, 658, 910, 1016
BoxI	GACNNNNGTC	2 cut(s)	77, 1043
BpiI	GAAGAC	1 cut(s)	1080
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	4 cut(s)	596, 708, 1125, 1137
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	3 cut(s)	67, 277, 803
BpuMI	CCSGG	1 cut(s)	977
BsaHI	GRCGYC	2 cut(s)	100, 299
BsaI	GGTCTC	1 cut(s)	1156
BsaWI	WCCGGW	1 cut(s)	1000
Bsc4I	CCNNNNNNNGG	2 cut(s)	810, 811
Bse118I	RCCGGY	1 cut(s)	1000
Bse1I	ACTGG	3 cut(s)	196, 579, 691
BseBI	CCWGG	1 cut(s)	818
BseGI	GGATG	4 cut(s)	870, 910, 925, 1040
BseLI	CCNNNNNNNGG	2 cut(s)	810, 811
BseMII	CTCAG	3 cut(s)	159, 534, 750
BseNI	ACTGG	3 cut(s)	196, 579, 691
BseRI	GAGGAG	2 cut(s)	141, 593
BseYI	CCCAGC	1 cut(s)	1074
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	653, 942
BshTI	ACCGGT	1 cut(s)	1000
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	976, 1001
BslFI	GGGAC	2 cut(s)	121, 827
BslI	CCNNNNNNNGG	2 cut(s)	810, 811
BsmAI	GTCTC	4 cut(s)	85, 344, 666, 1156
BsmFI	GGGAC	2 cut(s)	121, 827
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	2 cut(s)	653, 942
Bso31I	GGTCTC	1 cut(s)	1156
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	4 cut(s)	286, 328, 516, 928
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	3 cut(s)	201, 230, 1124
BspANI	GGCC	2 cut(s)	653, 942
BspCNI	CTCAG	3 cut(s)	160, 533, 751
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	815
BspPI	GGATC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	1156
BsrFI	RCCGGY	1 cut(s)	1000
BsrI	ACTGG	3 cut(s)	196, 579, 691
BssAI	RCCGGY	1 cut(s)	1000
BssMI	GATC	4 cut(s)	286, 328, 516, 928
BssNI	GRCGYC	2 cut(s)	100, 299
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	2 cut(s)	675, 952
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	2 cut(s)	100, 299
BstAPI	GCANNNNNTGC	2 cut(s)	413, 615
BstC8I	GCNNGC	2 cut(s)	793, 1059
BstDEI	CTNAG	5 cut(s)	168, 275, 398, 520, 759
BstF5I	GGATG	4 cut(s)	870, 910, 925, 1040
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	4 cut(s)	289, 331, 519, 931
BstMAI	GTCTC	4 cut(s)	85, 344, 666, 1156
BstMBI	GATC	4 cut(s)	286, 328, 516, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 615, 755, 1121
BstNI	CCWGG	1 cut(s)	818
BstPAI	GACNNNNGTC	2 cut(s)	77, 1043
BstSCI	CCNGG	2 cut(s)	816, 975
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	2 cut(s)	516, 928
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	2 cut(s)	516, 928
BsuI	GTATCC	2 cut(s)	536, 955
BsuRI	GGCC	2 cut(s)	653, 942
BtsCI	GGATG	4 cut(s)	870, 910, 925, 1040
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	4 cut(s)	68, 943, 1034, 1134
Cac8I	GCNNGC	2 cut(s)	793, 1059
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	1000
Cfr13I	GGNCC	2 cut(s)	652, 814
CsiI	ACCWGGT	1 cut(s)	816
Csp6I	GTAC	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	1000
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	4 cut(s)	290, 380, 467, 718
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	5 cut(s)	168, 275, 398, 520, 759
DpnI	GATC	4 cut(s)	288, 330, 518, 930
DpnII	GATC	4 cut(s)	286, 328, 516, 928
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	1156
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	747, 1037
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	816
FaeI	CATG	4 cut(s)	293, 383, 470, 721
FalI	AAGNNNNNCTT	2 cut(s)	949, 981
FaqI	GGGAC	2 cut(s)	121, 827
FatI	CATG	4 cut(s)	289, 379, 466, 717
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	1125
FokI	GGATG	4 cut(s)	877, 917, 932, 1027
Fsp4HI	GCNGC	1 cut(s)	1125
FspBI	CTAG	2 cut(s)	104, 665
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	1125
GsaI	CCCAGC	1 cut(s)	1078
GsuI	CTGGAG	4 cut(s)	596, 708, 1125, 1137
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	653, 942
HapII	CCGG	2 cut(s)	976, 1001
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	2 cut(s)	100, 299
Hin1II	CATG	4 cut(s)	293, 383, 470, 721
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	3 cut(s)	253, 395, 1032
HindII	GTYRAC	3 cut(s)	253, 395, 1032
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	3 cut(s)	214, 698, 983
HpaII	CCGG	2 cut(s)	976, 1001
HphI	GGTGA	4 cut(s)	51, 395, 960, 1144
Hpy166II	GTNNAC	5 cut(s)	93, 253, 364, 395, 1032
Hpy188I	TCNGA	3 cut(s)	523, 599, 706
Hpy188III	TCNNGA	6 cut(s)	31, 290, 665, 879, 902, 1161
Hpy8I	GTNNAC	5 cut(s)	93, 253, 364, 395, 1032
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	5 cut(s)	72, 182, 383, 951, 1140
HpyCH4III	ACNGT	2 cut(s)	675, 952
HpyCH4IV	ACGT	5 cut(s)	100, 299, 438, 447, 495
HpyCH4V	TGCA	6 cut(s)	38, 211, 609, 671, 679, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 615, 755, 1121
HpyF3I	CTNAG	5 cut(s)	168, 275, 398, 520, 759
HpySE526I	ACGT	5 cut(s)	100, 299, 438, 447, 495
Hsp92I	GRCGYC	2 cut(s)	100, 299
Hsp92II	CATG	4 cut(s)	293, 383, 470, 721
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	286, 328, 516, 928
LmnI	GCTCC	4 cut(s)	128, 241, 313, 580
LweI	GCATC	4 cut(s)	547, 658, 910, 1016
MabI	ACCWGGT	1 cut(s)	816
MaeI	CTAG	2 cut(s)	104, 665
MaeII	ACGT	5 cut(s)	100, 299, 438, 447, 495
MaeIII	GTNAC	5 cut(s)	476, 634, 644, 1045, 1108
MalI	GATC	4 cut(s)	288, 330, 518, 930
MboI	GATC	4 cut(s)	286, 328, 516, 928
MboII	GAAGA	4 cut(s)	135, 693, 740, 1080
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	2 cut(s)	516, 928
MhlI	GDGCHC	1 cut(s)	874
MlsI	TGGCCA	1 cut(s)	942
MluCI	AATT	9 cut(s)	154, 173, 225, 246, 279, 527, 591, 1020, 1151
MluNI	TGGCCA	1 cut(s)	942
MnlI	CCTC	8 cut(s)	81, 119, 212, 560, 571, 839, 1019, 1176
Mox20I	TGGCCA	1 cut(s)	942
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	2 cut(s)	12, 23
MslI	CAYNNNNRTG	3 cut(s)	384, 471, 716
Msp20I	TGGCCA	1 cut(s)	942
MspI	CCGG	2 cut(s)	976, 1001
MspR9I	CCNGG	2 cut(s)	818, 977
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	4 cut(s)	413, 615, 755, 1121
NciI	CCSGG	1 cut(s)	977
NdeII	GATC	4 cut(s)	286, 328, 516, 928
NlaIII	CATG	4 cut(s)	293, 383, 470, 721
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	2 cut(s)	1045, 1108
PagI	TCATGA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PctI	GAATGC	1 cut(s)	909
PfeI	GAWTC	3 cut(s)	214, 698, 983
PinAI	ACCGGT	1 cut(s)	1000
PkrI	GCNGC	1 cut(s)	1126
PpuMI	RGGWCCY	1 cut(s)	814
PshAI	GACNNNNGTC	2 cut(s)	77, 1043
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	816
PspFI	CCCAGC	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	2 cut(s)	652, 814
PspPPI	RGGWCCY	1 cut(s)	814
PsrI	GAACNNNNNNTAC	2 cut(s)	619, 651
PsuI	RGATCY	2 cut(s)	516, 928
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	3 cut(s)	384, 471, 716
SaqAI	TTAA	2 cut(s)	12, 23
SatI	GCNGC	1 cut(s)	1125
Sau3AI	GATC	4 cut(s)	286, 328, 516, 928
Sau96I	GGNCC	2 cut(s)	652, 814
ScrFI	CCNGG	2 cut(s)	818, 977
SduI	GDGCHC	1 cut(s)	874
SexAI	ACCWGGT	1 cut(s)	816
SfaNI	GCATC	4 cut(s)	547, 658, 910, 1016
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	3 cut(s)	384, 471, 716
SmlI	CTYRAG	3 cut(s)	82, 256, 782
SmoI	CTYRAG	3 cut(s)	82, 256, 782
Sse9I	AATT	9 cut(s)	154, 173, 225, 246, 279, 527, 591, 1020, 1151
SsiI	CCGC	3 cut(s)	201, 230, 1124
SspMI	CTAG	2 cut(s)	104, 665
StyD4I	CCNGG	2 cut(s)	816, 975
TaaI	ACNGT	2 cut(s)	675, 952
TaiI	ACGT	5 cut(s)	103, 302, 441, 450, 498
TaqI	TCGA	3 cut(s)	217, 1066, 1160
TasI	AATT	9 cut(s)	154, 173, 225, 246, 279, 527, 591, 1020, 1151
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	3 cut(s)	214, 698, 983
Tru1I	TTAA	2 cut(s)	12, 23
Tru9I	TTAA	2 cut(s)	12, 23
TscAI	CASTG	4 cut(s)	75, 943, 1041, 1134
TseFI	GTSAC	2 cut(s)	1045, 1108
Tsp45I	GTSAC	2 cut(s)	1045, 1108
TspDTI	ATGAA	4 cut(s)	402, 437, 441, 452
TspGWI	ACGGA	2 cut(s)	1033, 1158
TspRI	CASTG	4 cut(s)	75, 943, 1041, 1134
VpaK11BI	GGWCC	1 cut(s)	814
XbaI	TCTAGA	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	104, 665
ZraI	GACGTC	2 cut(s)	101, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.