Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016363

Physical Location & Seq

Genomic Coordinates Forward (+)

6889443 .. 6898148

Gene Structure 8706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGATTCGAACAGAGAACAACTCTTGGAAAATGGCAACTTGAAGGGCACAAGTAGAACCGAGGAGGAGGTTCACCATGGCATGACTGTTAGTGTTCAAAATGGGAAGGTTAGGAGGGTACTCAGTAACCTTCAGGTTGTTCTTCTGGGGACCAAGCTTTCGGTACTCCTTCCCACCATTCCTCTATCCTTTGTTGCTGTCTACTGTGGCTTTGGAAAGGCTTGGATTTTTACTATGAGCTTGCTTGCACTAACCTTACTTGCTGAGCGAATCAGCTTTCTCACAGAACAAGTAGCATACTACACTGGTCCAACAGTGGGAGGGCTTCTAAATGCAACATTTGGAAATGCCACAGAGCTGATTATAGCAATTTCAGCTCTAAATCAACACAAATTGCGGTTGCTCAAGTACTCTCTCTTGGGTTCAGTTCTTTCAAATCTTCTTTTAGTTCTTGGGACATCTCTTTTTTGTGGTGGCCTTGCCAACCTAAGAAGTGAGCAAAAATTCGAACGAAGGCAGGCCCATGTGAACTGCCTCCTTCTAATGCTAGGTGCATTCTGTCATATGCTGCCTATGTTGCTTCAATATGCCGGGGACTCTACTGTAACAGGAGGCCAAGCACTGGAGCTATCAAGGGCCCTTAGTATCATTATGCTGTTCTCGTATGCTACATACCTGTTCTTCCAGTTATGGACTCACCGCACATTTTTTGAATCAAACGAAGAATCAAATGATGATGACGATGATGATGTGGCTGCAGTAGGTTTCTGGAGTGGATTTGTATGGCTATTTGTTGTTACAATAATCACAGCTTGGTTGTCTGAGTATGTGGTTGGCACAATTGAGGATGCATCAAAATCTTGGGGTTTGTCTGTGAGCTTCCTCAGCCTCATCTTAGTTCCAATTCTTGGAAATGCAGCGGAGCATGCAGGTTCAATCATATTTGCTCTTAAAAACAAATTGGATATATCTTTAGGAGTCTCTCTGGGATCTGCAACTCAGATCGCCATGTTTGTGGTGCCAGCGTGCGTCGTTGTTGCTTGGATAATGGGCATTAACATGGATATCAACTTCAATCTCATCGAGACGGTGTCTCTTACTCTAGCAGTGATCACCACATCCATAGCTTTGCAGGATGGAACTTCCCATTATGTGAAAGGGCTGATTCTTATTCTTTGCTACATTGTTATTGGGATCTGCTTCTTGATATTCGAAACACCAATGGATGAAGAAACAAAAAGGACGAACATGCACTTGAGACTGAAACCATGGATGAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

428

Amino Acids

47.02

Weight (kDa)

5.63

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	74 - 231	4.4e-19	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	259 - 397	1.2e-18	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016363)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11490
malus_domestica	MD04G1151900.v1.1
prunus_persica	Prupe.6G277000_v2.0.a1
pyrus_communis	pycom04g13790
rosa_chinensis	RchiOBHm_Chr3g0463181
rosa_laevigata	RLG00000024805
rosa_roxburghii	Rroxscaffold_6G00416850 Rroxscaffold_6G00416870
rosa_rugosa	Rorug03G0062100.1
rosa_samantha	Rh3AG120300 Rh3BG124700 Rh3CG126700 Rh3DG125700
rosa_wichuraiana	Rw3G010180 Rw3G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	1018
AccB7I	CCANNNNNTGG	2 cut(s)	622, 908
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	3 cut(s)	397, 700, 920
AclWI	GGATC	2 cut(s)	997, 1202
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	120, 165, 410
AfiI	CCNNNNNNNGG	3 cut(s)	317, 622, 908
AgsI	TTSAA	7 cut(s)	43, 98, 435, 584, 713, 936, 1075
AluBI	AGCT	9 cut(s)	157, 240, 276, 358, 377, 628, 812, 879, 1127
AluI	AGCT	9 cut(s)	157, 240, 276, 358, 377, 628, 812, 879, 1127
Alw26I	GTCTC	4 cut(s)	985, 1079, 1098, 1252
AlwI	GGATC	2 cut(s)	997, 1202
AoxI	GGCC	4 cut(s)	475, 519, 613, 636
ApaI	GGGCCC	1 cut(s)	640
ApeKI	GCWGC	3 cut(s)	568, 755, 917
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspS9I	GGNCC	5 cut(s)	150, 308, 520, 636, 637
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	3 cut(s)	65, 689, 1105
AsuII	TTCGAA	3 cut(s)	8, 507, 1212
AvaII	GGWCC	2 cut(s)	150, 308
BaeGI	GKGCMC	2 cut(s)	50, 640
BanI	GGYRCC	1 cut(s)	1018
BanII	GRGCYC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	884
BbvI	GCAGC	3 cut(s)	555, 742, 929
BccI	CCATC	1 cut(s)	1130
BclI	TGATCA	1 cut(s)	1110
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	4 cut(s)	985, 1079, 1098, 1252
BfaI	CTAG	2 cut(s)	548, 1103
BfmI	CTRYAG	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	920
BisI	GCNGC	3 cut(s)	569, 756, 918
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	3 cut(s)	570, 757, 919
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	2 cut(s)	150, 308
BmgT120I	GGNCC	5 cut(s)	150, 308, 520, 636, 637
BmiI	GGNNCC	3 cut(s)	151, 638, 1020
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	838, 860
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	644, 790
Bpu10I	CCTNAGC	1 cut(s)	884
Bpu1102I	GCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	3 cut(s)	8, 507, 1212
BpuEI	CTTGAG	2 cut(s)	389, 1276
BpuMI	CCSGG	1 cut(s)	592
BsaJI	CCNNGG	4 cut(s)	60, 76, 591, 1268
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 622, 908
Bse1I	ACTGG	3 cut(s)	310, 627, 685
BseDI	CCNNGG	4 cut(s)	60, 76, 591, 1268
BseGI	GGATG	5 cut(s)	853, 1118, 1141, 1231, 1278
BseLI	CCNNNNNNNGG	3 cut(s)	317, 622, 908
BseMII	CTCAG	5 cut(s)	136, 255, 813, 898, 1013
BseNI	ACTGG	3 cut(s)	310, 627, 685
BseRI	GAGGAG	2 cut(s)	77, 80
BseSI	GKGCMC	2 cut(s)	50, 640
BseXI	GCAGC	3 cut(s)	555, 742, 929
BshFI	GGCC	4 cut(s)	477, 521, 615, 638
BshNI	GGYRCC	1 cut(s)	1018
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	3 cut(s)	163, 469, 608
BslI	CCNNNNNNNGG	3 cut(s)	317, 622, 908
BsmAI	GTCTC	4 cut(s)	985, 1079, 1098, 1252
BsmBI	CGTCTC	1 cut(s)	1079
BsmFI	GGGAC	3 cut(s)	163, 469, 608
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	4 cut(s)	477, 521, 615, 638
Bsp119I	TTCGAA	3 cut(s)	8, 507, 1212
Bsp120I	GGGCCC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	50, 640
Bsp143I	GATC	4 cut(s)	989, 1002, 1110, 1194
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	2 cut(s)	76, 1268
BspACI	CCGC	3 cut(s)	397, 700, 920
BspANI	GGCC	4 cut(s)	477, 521, 615, 638
BspCNI	CTCAG	5 cut(s)	135, 256, 814, 897, 1012
BspLI	GGNNCC	3 cut(s)	151, 638, 1020
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	920
BspPI	GGATC	2 cut(s)	997, 1202
BspT104I	TTCGAA	3 cut(s)	8, 507, 1212
BspT107I	GGYRCC	1 cut(s)	1018
BsrI	ACTGG	3 cut(s)	310, 627, 685
BssECI	CCNNGG	4 cut(s)	60, 76, 591, 1268
BssMI	GATC	4 cut(s)	989, 1002, 1110, 1194
BssT1I	CCWWGG	2 cut(s)	76, 1268
Bst4CI	ACNGT	5 cut(s)	88, 206, 316, 604, 1090
BstBI	TTCGAA	3 cut(s)	8, 507, 1212
BstC8I	GCNNGC	6 cut(s)	242, 246, 519, 927, 1023, 1027
BstDEI	CTNAG	8 cut(s)	122, 264, 488, 641, 822, 884, 895, 999
BstDSI	CCRYGG	2 cut(s)	76, 1268
BstF5I	GGATG	5 cut(s)	853, 1118, 1141, 1231, 1278
BstKTI	GATC	4 cut(s)	992, 1005, 1113, 1197
BstMAI	GTCTC	4 cut(s)	985, 1079, 1098, 1252
BstMBI	GATC	4 cut(s)	989, 1002, 1110, 1194
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 577, 885, 926
BstNSI	RCATGY	2 cut(s)	929, 1252
BstSCI	CCNGG	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	756
BstSLI	GKGCMC	2 cut(s)	50, 640
BstV1I	GCAGC	3 cut(s)	555, 742, 929
BstX2I	RGATCY	2 cut(s)	989, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	2 cut(s)	989, 1194
BsuRI	GGCC	4 cut(s)	477, 521, 615, 638
BtgI	CCRYGG	2 cut(s)	76, 1268
BtsCI	GGATG	5 cut(s)	853, 1118, 1141, 1231, 1278
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	4 cut(s)	303, 321, 620, 1113
BveI	ACCTGC	1 cut(s)	920
Cac8I	GCNNGC	6 cut(s)	242, 246, 519, 927, 1023, 1027
Cfr13I	GGNCC	5 cut(s)	150, 308, 520, 636, 637
CseI	GACGC	1 cut(s)	1018
Csp6I	GTAC	3 cut(s)	119, 164, 409
CviAII	CATG	8 cut(s)	77, 82, 524, 926, 1009, 1060, 1249, 1269
CviQI	GTAC	3 cut(s)	119, 164, 409
DdeI	CTNAG	8 cut(s)	122, 264, 488, 641, 822, 884, 895, 999
DpnI	GATC	4 cut(s)	991, 1004, 1112, 1196
DpnII	GATC	4 cut(s)	989, 1002, 1110, 1194
Eco130I	CCWWGG	2 cut(s)	76, 1268
Eco24I	GRGCYC	1 cut(s)	640
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	150, 308
Eco57I	CTGAAG	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	636, 637
EcoRV	GATATC	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	76, 1268
EcoT22I	ATGCAT	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	2 cut(s)	76, 1268
Esp3I	CGTCTC	1 cut(s)	1079
FaeI	CATG	8 cut(s)	80, 85, 527, 929, 1012, 1063, 1252, 1272
FaqI	GGGAC	3 cut(s)	163, 469, 608
FatI	CATG	8 cut(s)	76, 81, 523, 925, 1008, 1059, 1248, 1268
FauNDI	CATATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	1110
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	569, 756, 918
FokI	GGATG	4 cut(s)	860, 1105, 1148, 1238
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	3 cut(s)	569, 756, 918
FspBI	CTAG	2 cut(s)	548, 1103
GluI	GCNGC	3 cut(s)	569, 756, 918
GsuI	CTGGAG	2 cut(s)	644, 790
HaeIII	GGCC	4 cut(s)	477, 521, 615, 638
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	1 cut(s)	1018
Hin1II	CATG	8 cut(s)	80, 85, 527, 929, 1012, 1063, 1252, 1272
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	8 cut(s)	5, 270, 596, 694, 713, 725, 978, 1165
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	3 cut(s)	65, 689, 1105
Hpy166II	GTNNAC	3 cut(s)	73, 202, 529
Hpy188I	TCNGA	2 cut(s)	823, 1002
Hpy188III	TCNNGA	3 cut(s)	769, 1084, 1204
Hpy8I	GTNNAC	3 cut(s)	73, 202, 529
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	7 cut(s)	37, 100, 140, 179, 507, 548, 1270
HpyCH4III	ACNGT	5 cut(s)	88, 206, 316, 604, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 577, 885, 926
HpyF3I	CTNAG	8 cut(s)	122, 264, 488, 641, 822, 884, 895, 999
Hsp92II	CATG	8 cut(s)	80, 85, 527, 929, 1012, 1063, 1252, 1272
Ksp22I	TGATCA	1 cut(s)	1110
Kzo9I	GATC	4 cut(s)	989, 1002, 1110, 1194
LmnI	GCTCC	2 cut(s)	625, 922
Lsp1109I	GCAGC	3 cut(s)	555, 742, 929
LweI	GCATC	2 cut(s)	838, 860
MaeI	CTAG	2 cut(s)	548, 1103
MaeIII	GTNAC	3 cut(s)	125, 604, 796
MalI	GATC	4 cut(s)	991, 1004, 1112, 1196
MboI	GATC	4 cut(s)	989, 1002, 1110, 1194
MboII	GAAGA	5 cut(s)	134, 431, 673, 734, 1241
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	2 cut(s)	989, 1194
MhlI	GDGCHC	2 cut(s)	50, 640
MluCI	AATT	6 cut(s)	369, 392, 503, 840, 903, 959
MlyI	GAGTC	3 cut(s)	590, 688, 987
MmeI	TCCRAC	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	853
MseI	TTAA	2 cut(s)	951, 1056
MslI	CAYNNNNRTG	2 cut(s)	1013, 1058
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	592
MunI	CAATTG	1 cut(s)	840
Mva1269I	GAATGC	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	374, 577, 885, 926
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	2 cut(s)	76, 1268
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	4 cut(s)	989, 1002, 1110, 1194
NlaIII	CATG	8 cut(s)	80, 85, 527, 929, 1012, 1063, 1252, 1272
NlaIV	GGNNCC	3 cut(s)	151, 638, 1020
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	2 cut(s)	929, 1252
NspV	TTCGAA	3 cut(s)	8, 507, 1212
PaeI	GCATGC	1 cut(s)	929
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	5, 270, 713, 725, 1165
PflFI	GACNNNGTC	1 cut(s)	1090
PflMI	CCANNNNNTGG	2 cut(s)	622, 908
PkrI	GCNGC	3 cut(s)	570, 757, 919
PleI	GAGTC	3 cut(s)	590, 688, 986
PpsI	GAGTC	3 cut(s)	590, 688, 986
PspN4I	GGNNCC	3 cut(s)	151, 638, 1020
PspOMI	GGGCCC	1 cut(s)	636
PspPI	GGNCC	5 cut(s)	150, 308, 520, 636, 637
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	989, 1194
PsyI	GACNNNGTC	1 cut(s)	1090
RsaI	GTAC	3 cut(s)	120, 165, 410
RsaNI	GTAC	3 cut(s)	119, 164, 409
RseI	CAYNNNNRTG	2 cut(s)	1013, 1058
SaqAI	TTAA	2 cut(s)	951, 1056
SatI	GCNGC	3 cut(s)	569, 756, 918
Sau3AI	GATC	4 cut(s)	989, 1002, 1110, 1194
Sau96I	GGNCC	5 cut(s)	150, 308, 520, 636, 637
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	3 cut(s)	590, 688, 987
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	50, 640
SfaNI	GCATC	2 cut(s)	838, 860
SfcI	CTRYAG	1 cut(s)	756
SfuI	TTCGAA	3 cut(s)	8, 507, 1212
SinI	GGWCC	2 cut(s)	150, 308
SmiMI	CAYNNNNRTG	2 cut(s)	1013, 1058
SmlI	CTYRAG	2 cut(s)	404, 1255
SmoI	CTYRAG	2 cut(s)	404, 1255
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	6 cut(s)	369, 392, 503, 840, 903, 959
SsiI	CCGC	3 cut(s)	397, 700, 920
SspMI	CTAG	2 cut(s)	548, 1103
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	2 cut(s)	76, 1268
TaaI	ACNGT	5 cut(s)	88, 206, 316, 604, 1090
TaqI	TCGA	4 cut(s)	8, 507, 1083, 1212
TasI	AATT	6 cut(s)	369, 392, 503, 840, 903, 959
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	5 cut(s)	5, 270, 713, 725, 1165
Tru1I	TTAA	2 cut(s)	951, 1056
Tru9I	TTAA	2 cut(s)	951, 1056
TscAI	CASTG	4 cut(s)	310, 321, 627, 1113
TseI	GCWGC	3 cut(s)	568, 755, 917
TspDTI	ATGAA	1 cut(s)	1242
TspRI	CASTG	4 cut(s)	310, 321, 627, 1113
Tth111I	GACNNNGTC	1 cut(s)	1090
Van91I	CCANNNNNTGG	2 cut(s)	622, 908
VpaK11BI	GGWCC	2 cut(s)	150, 308
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	2 cut(s)	929, 1252
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	548, 1103
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.