Rw3G010180

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
9758419 .. 9761557
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010180.1

Sequence Viewer

Length: 1293 bp
ATGGATTCGAACAAAGAACACCTCTTGGATAATGGCAACTTGAAGAGAACGAGTAGTAACGAGCAGGAGGTTCACCATGGCATGACTGCTAGACAATTGTCATCTTCTTCGCTGCAAAACAAGTCGGTTCCTACACTACTACCTATTAGTGTGCAAAATGGGAAGGTTAGGAAGGTACTCATCAATTTTCAGGTTGTTCTTTTGGGGACCAAGCGTTCGGTACTCCTTCCCACCATTCCTCTATCCTTGGTTGCTGTCTACCGTGGTATTGGAAAGGTCATAGCATACTACACTGTGGGAGGGCTTCTAAATGCAACATTTGGAAATGCCAGAGAGCTAATTATCGCAATTTCAGCTCTAAGTCAAAACAAATTGCGATTGCTCAAGTACTCTCTCTTGGGTTCAGTTTTTTCAAATCTTCTTTTAGTCCTCGGGACATCACTTTTCTGTGGTGGCCTTGCCAACCTAAGAAGTGAGCAAAAATTCGAAAGAAGGCAGGCCCAAGTGAACTCGCTCCTTCTAATGCTAGGTCCATTCTGTCATATGCTGCCTATGTTGCTTCAATATGCCGGGGACTCCGCTGGTAAAGAAGGCCAAATACTCGAGCTATCAAGGGCCCTTAGTATCATCATGCTGCTTTCATATGCTACATACCTGTTCTTCCAGTTATGGACTCACCGCACATTTTTCGAATCACTCGAAGAATCAAATGATGATGAGGATGATGATGTGGCTGTAGTAGGTTTCTGGAGTGGATTTGTTTGGTTATTTGTTGTTACAATCACCACAGCTTGGTTGTCTGAGTATGTAGTTGGCACAATTGAGGTAATTCCCACTGTTTTATATAATGTCTTCCTCAGCCTCATCTTGGTTCCAATTCTTGGAAATGCAGCAGAGCATGCAGGTTCAATCATATTTGTTCTTAAAAACAAGTTGGATATATCTTTAGGAGTCTCTTTGGGATCTGCAACTCAGATCGCTATGTTCGTGGTGCCATCGAGCGTTGTTGTTGCTTGGATAATGGGCATTAACATGGATATTAACTTCAATCTCATCGAGACGACGTCTCTTGCTCTGGCAGTGATCACCACATCAATTGCTCTACAGGTAATCTTCACATTCATAGTACATACATCCATAACTTCCTATATATTGGAGTCTTCTAAATCAAATTCCTTTTGGTTGGTTCTTATTCTCTGCTACATTGTTATTGGGATCTGCTTCTTTATATTCGAAACACCAATGGGTAAGACGAACATGCACTGGAGACTGAAACCATGGATGAAAGAATAG

Protein Analysis

430

Amino Acids

47.67

Weight (kDa)

7.7

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 94 - 224 1.7e-14 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 252 - 397 5.2e-09 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016363)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1067
Acc36I ACCTGC 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 991
AccB7I CCANNNNNTGG 2 cut(s) 792, 881
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 579, 679
AclWI GGATC 2 cut(s) 970, 1223
AcsI RAATTY 2 cut(s) 482, 1171
AcyI GRCGYC 1 cut(s) 1064
AfaI GTAC 4 cut(s) 177, 222, 389, 1128
AfiI CCNNNNNNNGG 3 cut(s) 792, 868, 881
AgsI TTSAA 5 cut(s) 43, 414, 563, 909, 1048
AloI GAACNNNNNNTCC 2 cut(s) 199, 231
AluBI AGCT 4 cut(s) 337, 356, 607, 791
AluI AGCT 4 cut(s) 337, 356, 607, 791
Alw26I GTCTC 4 cut(s) 958, 1052, 1071, 1261
AlwI GGATC 2 cut(s) 970, 1223
Ama87I CYCGRG 2 cut(s) 431, 602
AoxI GGCC 4 cut(s) 454, 498, 592, 615
ApaI GGGCCC 1 cut(s) 619
ApeKI GCWGC 4 cut(s) 112, 547, 634, 890
ApoI RAATTY 2 cut(s) 482, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AspS9I GGNCC 5 cut(s) 207, 499, 530, 615, 616
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 4 cut(s) 65, 668, 775, 1078
AsuII TTCGAA 4 cut(s) 8, 486, 690, 1233
AvaI CYCGRG 2 cut(s) 431, 602
AvaII GGWCC 2 cut(s) 207, 530
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 991
BanII GRGCYC 1 cut(s) 619
BarI GAAGNNNNNNTAC 2 cut(s) 582, 614
BbsI GAAGAC 2 cut(s) 844, 1152
BbvCI CCTCAGC 1 cut(s) 857
BbvI GCAGC 4 cut(s) 99, 534, 621, 902
BccI CCATC 1 cut(s) 1003
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BclI TGATCA 1 cut(s) 1083
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 958, 1052, 1071, 1261
BfaI CTAG 2 cut(s) 90, 527
BfmI CTRYAG 2 cut(s) 735, 1103
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 4 cut(s) 113, 548, 635, 891
BlsI GCNGC 4 cut(s) 114, 549, 636, 892
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 207, 530
BmeT110I CYCGRG 2 cut(s) 431, 602
BmgT120I GGNCC 5 cut(s) 207, 499, 530, 615, 616
BmiI GGNNCC 5 cut(s) 129, 208, 617, 873, 993
BmrFI CCNGG 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 844, 1152
BpmI CTGGAG 2 cut(s) 769, 1285
Bpu10I CCTNAGC 1 cut(s) 857
Bpu14I TTCGAA 4 cut(s) 8, 486, 690, 1233
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 571
BsaHI GRCGYC 1 cut(s) 1064
BsaJI CCNNGG 6 cut(s) 76, 246, 262, 430, 570, 1277
Bsc4I CCNNNNNNNGG 3 cut(s) 792, 868, 881
Bse1I ACTGG 2 cut(s) 664, 1268
BseDI CCNNGG 6 cut(s) 76, 246, 262, 430, 570, 1277
BseGI GGATG 3 cut(s) 727, 1133, 1287
BseLI CCNNNNNNNGG 3 cut(s) 792, 868, 881
BseMII CTCAG 3 cut(s) 792, 871, 986
BseNI ACTGG 2 cut(s) 664, 1268
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 99, 534, 621, 902
BshFI GGCC 4 cut(s) 456, 500, 594, 617
BshNI GGYRCC 1 cut(s) 991
BsiHKCI CYCGRG 2 cut(s) 431, 602
BsiSI CCGG 1 cut(s) 570
BslFI GGGAC 3 cut(s) 220, 448, 587
BslI CCNNNNNNNGG 3 cut(s) 792, 868, 881
BsmAI GTCTC 4 cut(s) 958, 1052, 1071, 1261
BsmBI CGTCTC 2 cut(s) 1052, 1071
BsmFI GGGAC 3 cut(s) 220, 448, 587
BsnI GGCC 4 cut(s) 456, 500, 594, 617
BsoBI CYCGRG 2 cut(s) 431, 602
Bsp119I TTCGAA 4 cut(s) 8, 486, 690, 1233
Bsp120I GGGCCC 1 cut(s) 615
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 4 cut(s) 962, 975, 1083, 1215
Bsp19I CCATGG 2 cut(s) 76, 1277
BspACI CCGC 2 cut(s) 579, 679
BspANI GGCC 4 cut(s) 456, 500, 594, 617
BspCNI CTCAG 3 cut(s) 793, 870, 985
BspLI GGNNCC 5 cut(s) 129, 208, 617, 873, 993
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 2 cut(s) 970, 1223
BspT104I TTCGAA 4 cut(s) 8, 486, 690, 1233
BspT107I GGYRCC 1 cut(s) 991
BsrI ACTGG 2 cut(s) 664, 1268
BssECI CCNNGG 6 cut(s) 76, 246, 262, 430, 570, 1277
BssMI GATC 4 cut(s) 962, 975, 1083, 1215
BssNI GRCGYC 1 cut(s) 1064
BssT1I CCWWGG 3 cut(s) 76, 246, 1277
Bst4CI ACNGT 3 cut(s) 263, 295, 838
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 1064
BstAPI GCANNNNNTGC 1 cut(s) 899
BstBI TTCGAA 4 cut(s) 8, 486, 690, 1233
BstC8I GCNNGC 2 cut(s) 498, 900
BstDEI CTNAG 6 cut(s) 359, 467, 620, 801, 857, 972
BstDSI CCRYGG 3 cut(s) 76, 262, 1277
BstF5I GGATG 3 cut(s) 727, 1133, 1287
BstKTI GATC 4 cut(s) 965, 978, 1086, 1218
BstMAI GTCTC 4 cut(s) 958, 1052, 1071, 1261
BstMBI GATC 4 cut(s) 962, 975, 1083, 1215
BstMWI GCNNNNNNNGC 3 cut(s) 353, 556, 899
BstNSI RCATGY 2 cut(s) 902, 1261
BstPAI GACNNNNGTC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 735, 1103
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 4 cut(s) 99, 534, 621, 902
BstV2I GAAGAC 2 cut(s) 844, 1152
BstX2I RGATCY 2 cut(s) 962, 1215
BstYI RGATCY 2 cut(s) 962, 1215
BsuRI GGCC 4 cut(s) 456, 500, 594, 617
BtgI CCRYGG 3 cut(s) 76, 262, 1277
BtsCI GGATG 3 cut(s) 727, 1133, 1287
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 4 cut(s) 291, 834, 1086, 1261
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 2 cut(s) 498, 900
Cfr13I GGNCC 5 cut(s) 207, 499, 530, 615, 616
Csp6I GTAC 4 cut(s) 176, 221, 388, 1127
CspCI CAANNNNNGTGG 2 cut(s) 1078, 1113
CviAII CATG 7 cut(s) 77, 82, 631, 899, 1033, 1258, 1278
CviQI GTAC 4 cut(s) 176, 221, 388, 1127
DdeI CTNAG 6 cut(s) 359, 467, 620, 801, 857, 972
DpnI GATC 4 cut(s) 964, 977, 1085, 1217
DpnII GATC 4 cut(s) 962, 975, 1083, 1215
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 3 cut(s) 76, 246, 1277
Eco24I GRGCYC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 207, 530
Eco88I CYCGRG 2 cut(s) 431, 602
EcoO109I RGGNCCY 2 cut(s) 615, 616
EcoT14I CCWWGG 3 cut(s) 76, 246, 1277
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 3 cut(s) 76, 246, 1277
Esp3I CGTCTC 2 cut(s) 1052, 1071
FaeI CATG 7 cut(s) 80, 85, 634, 902, 1036, 1261, 1281
FaqI GGGAC 3 cut(s) 220, 448, 587
FatI CATG 7 cut(s) 76, 81, 630, 898, 1032, 1257, 1277
FauNDI CATATG 2 cut(s) 543, 643
FbaI TGATCA 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 113, 548, 635, 891
FokI GGATG 2 cut(s) 734, 1120
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 4 cut(s) 113, 548, 635, 891
FspBI CTAG 2 cut(s) 90, 527
GluI GCNGC 4 cut(s) 113, 548, 635, 891
GsuI CTGGAG 2 cut(s) 769, 1285
HaeIII GGCC 4 cut(s) 456, 500, 594, 617
HapII CCGG 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 1064
Hin1II CATG 7 cut(s) 80, 85, 634, 902, 1036, 1261, 1281
HinfI GANTC 7 cut(s) 5, 575, 673, 692, 704, 951, 1157
HpaII CCGG 1 cut(s) 570
HphI GGTGA 4 cut(s) 65, 668, 775, 1078
Hpy166II GTNNAC 3 cut(s) 73, 259, 508
Hpy188I TCNGA 2 cut(s) 802, 975
Hpy188III TCNNGA 3 cut(s) 433, 748, 1057
Hpy8I GTNNAC 3 cut(s) 73, 259, 508
Hpy99I CGWCG 1 cut(s) 1066
HpyAV CCTTC 6 cut(s) 157, 166, 236, 486, 527, 584
HpyCH4III ACNGT 3 cut(s) 263, 295, 838
HpyCH4IV ACGT 1 cut(s) 1064
HpyCH4V TGCA 7 cut(s) 115, 154, 314, 890, 902, 968, 1261
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 556, 899
HpyF3I CTNAG 6 cut(s) 359, 467, 620, 801, 857, 972
HpySE526I ACGT 1 cut(s) 1064
Hsp92I GRCGYC 1 cut(s) 1064
Hsp92II CATG 7 cut(s) 80, 85, 634, 902, 1036, 1261, 1281
Ksp22I TGATCA 1 cut(s) 1083
Kzo9I GATC 4 cut(s) 962, 975, 1083, 1215
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 4 cut(s) 99, 534, 621, 902
MaeI CTAG 2 cut(s) 90, 527
MaeII ACGT 1 cut(s) 1064
MaeIII GTNAC 2 cut(s) 56, 775
MalI GATC 4 cut(s) 964, 977, 1085, 1217
MboI GATC 4 cut(s) 962, 975, 1083, 1215
MboII GAAGA 9 cut(s) 55, 96, 99, 410, 652, 713, 844, 1105, 1152
MfeI CAATTG 3 cut(s) 95, 819, 1095
MflI RGATCY 2 cut(s) 962, 1215
MhlI GDGCHC 1 cut(s) 619
MlyI GAGTC 4 cut(s) 569, 667, 960, 1166
MmeI TCCRAC 1 cut(s) 915
MnlI CCTC 9 cut(s) 32, 61, 249, 293, 440, 712, 817, 866, 872
MseI TTAA 3 cut(s) 924, 1029, 1041
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 571
MunI CAATTG 3 cut(s) 95, 819, 1095
MwoI GCNNNNNNNGC 3 cut(s) 353, 556, 899
NciI CCSGG 1 cut(s) 571
NcoI CCATGG 2 cut(s) 76, 1277
NdeI CATATG 2 cut(s) 543, 643
NdeII GATC 4 cut(s) 962, 975, 1083, 1215
NlaIII CATG 7 cut(s) 80, 85, 634, 902, 1036, 1261, 1281
NlaIV GGNNCC 5 cut(s) 129, 208, 617, 873, 993
NspI RCATGY 2 cut(s) 902, 1261
NspV TTCGAA 4 cut(s) 8, 486, 690, 1233
PaeI GCATGC 1 cut(s) 902
PaeR7I CTCGAG 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 696, 984
PfeI GAWTC 3 cut(s) 5, 692, 704
PflFI GACNNNGTC 1 cut(s) 1063
PflMI CCANNNNNTGG 2 cut(s) 792, 881
PkrI GCNGC 4 cut(s) 114, 549, 636, 892
PleI GAGTC 4 cut(s) 569, 667, 959, 1165
PpsI GAGTC 4 cut(s) 569, 667, 959, 1165
PshAI GACNNNNGTC 1 cut(s) 97
PspN4I GGNNCC 5 cut(s) 129, 208, 617, 873, 993
PspOMI GGGCCC 1 cut(s) 615
PspPI GGNCC 5 cut(s) 207, 499, 530, 615, 616
PspXI VCTCGAGB 1 cut(s) 602
PsuI RGATCY 2 cut(s) 962, 1215
PsyI GACNNNGTC 1 cut(s) 1063
RsaI GTAC 4 cut(s) 177, 222, 389, 1128
RsaNI GTAC 4 cut(s) 176, 221, 388, 1127
RseI CAYNNNNRTG 1 cut(s) 1031
SaqAI TTAA 3 cut(s) 924, 1029, 1041
SatI GCNGC 4 cut(s) 113, 548, 635, 891
Sau3AI GATC 4 cut(s) 962, 975, 1083, 1215
Sau96I GGNCC 5 cut(s) 207, 499, 530, 615, 616
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 4 cut(s) 569, 667, 960, 1166
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 1 cut(s) 619
SfcI CTRYAG 2 cut(s) 735, 1103
Sfr274I CTCGAG 1 cut(s) 602
SfuI TTCGAA 4 cut(s) 8, 486, 690, 1233
SinI GGWCC 2 cut(s) 207, 530
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 2 cut(s) 383, 602
SmoI CTYRAG 2 cut(s) 383, 602
SphI GCATGC 1 cut(s) 902
SsiI CCGC 2 cut(s) 579, 679
SspMI CTAG 2 cut(s) 90, 527
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 3 cut(s) 76, 246, 1277
TaaI ACNGT 3 cut(s) 263, 295, 838
TaiI ACGT 1 cut(s) 1067
TaqI TCGA 8 cut(s) 8, 486, 603, 690, 699, 998, 1056, 1233
TatI WGTACW 2 cut(s) 387, 1126
TfiI GAWTC 3 cut(s) 5, 692, 704
Tru1I TTAA 3 cut(s) 924, 1029, 1041
Tru9I TTAA 3 cut(s) 924, 1029, 1041
TscAI CASTG 4 cut(s) 298, 841, 1086, 1268
TseI GCWGC 4 cut(s) 112, 547, 634, 890
TspDTI ATGAA 2 cut(s) 630, 1111
TspRI CASTG 4 cut(s) 298, 841, 1086, 1268
Tth111I GACNNNGTC 1 cut(s) 1063
Van91I CCANNNNNTGG 2 cut(s) 792, 881
VpaK11BI GGWCC 2 cut(s) 207, 530
XapI RAATTY 2 cut(s) 482, 1171
XceI RCATGY 2 cut(s) 902, 1261
XhoI CTCGAG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 2 cut(s) 90, 527
ZraI GACGTC 1 cut(s) 1065
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.