MD04G1151900.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
24108144 .. 24112570
4427 bp
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UTR
Exon/CDS
Intron
MD04G1151900.v1.1.491

Sequence Viewer

Length: 1317 bp
ATGGCTTCCAACCAAGAATGCCTCTTGGAAAACGGCAACCTTGTCAATGACACAAGGGAGGAGGAGGAGGAGGTGAACCACCACCATGGCAAGACAGCCAGGCAAATGTCAGCGTCTTCGCTGCGCAGAAAGTCGGATCCTTCACTAGCAGCTGGTGTTCAGAACCGCCACCTTAGGCAGTTGCTTGTAAATCTGCAAGTTGTTCTTTTTGGGACTAAGCTTTCAGTTCTCCTTCCCACCATTCCTCTATCCATTATTGCTGTGTGCTATGGCTTTGGAAAGCCCTGGATTTTCGCTCTGAGCTTACTTGCAATCACCTTACTTGCTGAGCGGATCAGTTTCCTTACAGAACAAATATCATACTACACTGGTCCAACAGTTGGGGGGCTTCTGAATGCAACATTTGGTAATGCCACAGAGCTGATCATAGCAATATCTGCTCTAAGCCAAAATAACATAGCTTTGCTCAAGTATTCTCTCTTGGGTTCAGTTCTTTCCAACCTTCTCTTGGTCCTTGGCACCTCCCTTTTCTGCGGTGGCCTTGCCAACCTCAGAGGGGAGCAAAAATTTGAAAGAAGACAGGCGAATGTGAACTCTCTCCTTCTACTGCTAGGCACATTCTGCCACATGCTACCGATGTTGCTTCGATACGCTGGGGACTCTGCAGTAGCAGCGGACCAAACACTCCAAATCTCAAGGGCCTTTAGTATCGTAATGCTACTTTCTTATACTGCATTCTTATTCTTCCAACTGTGGACTCACCATGGATATTTCGAATCTCAGCAAGTATCGGAAGTTGATGGTGATGAGGATGTTCAAGAAGATGCGGCTGAGGTCGGTTTCTGGAGTGGATTTGCTTGGTTGTTTGTTGTCACTACCATCACCGCTTTGCTGTCTGAATATGTGGTGGGCACAATTGAGGATGCGTCAAGATCCTGGGGTTTGTCAGTCAGCTTCCTCAGCCTCATCCTTGTACCGATTCTTGGAAATGCAGCTGAGCACGCAGGATCGATCATATTTGCTCTCAAGAACAAGTTGGATATATCTTTAGCAGTCTCTTTGGGGTCTGCAACTCAGATCGCGATGTTCGTGGTTCCGTGCTGCGCTGTTGTTGGTTGGATAATGGGAGTTAACATGGATCTGAACTTCAATCTGATTGAGACAGTGTCATTTGCTCTAGCAGTGATCACAGCAGCCTTTGCTCTACAAGATGGGACTTCACATTATGTGAAGGGATTGGTTCTTATTCTCTGCTACATTGTCATTGGAATCTGCTTCTTCGTATACGAAACACCCCTCGATCGAACAAACAAATAG

Protein Analysis

439

Amino Acids

47.73

Weight (kDa)

5.29

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 95 - 252 1.1e-19 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 285 - 422 4.5e-19 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016363)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 1284
AccII CGCG 1 cut(s) 1082
AciI CCGC 6 cut(s) 166, 331, 534, 674, 827, 885
AclWI GGATC 6 cut(s) 131, 144, 341, 927, 1015, 1146
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 1 cut(s) 975
AfiI CCNNNNNNNGG 4 cut(s) 380, 508, 556, 983
AgsI TTSAA 3 cut(s) 572, 818, 1150
AjnI CCWGG 3 cut(s) 98, 284, 935
AluBI AGCT 7 cut(s) 152, 220, 303, 421, 461, 954, 995
AluI AGCT 7 cut(s) 152, 220, 303, 421, 461, 954, 995
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 2 cut(s) 1060, 1154
AlwI GGATC 6 cut(s) 131, 144, 341, 927, 1015, 1146
AoxI GGCC 2 cut(s) 538, 699
ApeKI GCWGC 6 cut(s) 121, 149, 671, 992, 1101, 1193
ApoI RAATTY 1 cut(s) 566
AspLEI GCGC 2 cut(s) 126, 1106
AspS9I GGNCC 4 cut(s) 371, 511, 676, 699
AsuHPI GGTGA 5 cut(s) 85, 307, 752, 815, 874
AsuII TTCGAA 1 cut(s) 774
AvaII GGWCC 3 cut(s) 371, 511, 676
AxyI CCTNAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 518
BbsI GAAGAC 2 cut(s) 108, 583
Bbv12I GWGCWC 1 cut(s) 1002
BbvCI CCTCAGC 2 cut(s) 831, 959
BbvI GCAGC 6 cut(s) 108, 161, 683, 1004, 1088, 1205
BccI CCATC 3 cut(s) 794, 887, 1205
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 3 cut(s) 100, 286, 937
BclI TGATCA 2 cut(s) 423, 1185
BcoDI GTCTC 2 cut(s) 1060, 1154
BfaI CTAG 3 cut(s) 146, 611, 1178
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 7 cut(s) 122, 150, 672, 828, 993, 1102, 1194
BlpI GCTNAGC 2 cut(s) 327, 996
BlsI GCNGC 7 cut(s) 123, 151, 673, 829, 994, 1103, 1195
Bme1390I CCNGG 3 cut(s) 100, 286, 937
Bme18I GGWCC 3 cut(s) 371, 511, 676
BmgT120I GGNCC 4 cut(s) 371, 511, 676, 699
BmiI GGNNCC 3 cut(s) 138, 520, 1095
BmrFI CCNGG 3 cut(s) 100, 286, 937
BmsI GCATC 2 cut(s) 814, 913
BpiI GAAGAC 2 cut(s) 108, 583
BpmI CTGGAG 1 cut(s) 865
Bpu10I CCTNAGC 2 cut(s) 831, 959
Bpu1102I GCTNAGC 2 cut(s) 327, 996
Bpu14I TTCGAA 1 cut(s) 774
BpuEI CTTGAG 3 cut(s) 452, 679, 1010
Bsa29I ATCGAT 1 cut(s) 1010
BsaJI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 508, 556, 983
Bse1I ACTGG 1 cut(s) 373
Bse21I CCTNAGG 1 cut(s) 173
BseBI CCWGG 3 cut(s) 100, 286, 937
BseCI ATCGAT 1 cut(s) 1010
BseDI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
BseGI GGATG 3 cut(s) 817, 928, 966
BseLI CCNNNNNNNGG 4 cut(s) 380, 508, 556, 983
BseMII CTCAG 8 cut(s) 290, 318, 565, 794, 822, 973, 987, 1088
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 4 cut(s) 74, 77, 80, 83
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 6 cut(s) 108, 161, 683, 1004, 1088, 1205
BseYI CCCAGC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 1082
Bsh1285I CGRYCG 1 cut(s) 1303
BshFI GGCC 2 cut(s) 540, 701
BshNI GGYRCC 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 1010
BsiEI CGRYCG 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 1002
BslFI GGGAC 3 cut(s) 226, 671, 1228
BslI CCNNNNNNNGG 4 cut(s) 380, 508, 556, 983
BsmAI GTCTC 2 cut(s) 1060, 1154
BsmFI GGGAC 3 cut(s) 226, 671, 1228
BsmI GAATGC 3 cut(s) 23, 400, 734
BsnI GGCC 2 cut(s) 540, 701
Bsp119I TTCGAA 1 cut(s) 774
Bsp1286I GDGCHC 2 cut(s) 914, 1002
Bsp1720I GCTNAGC 2 cut(s) 327, 996
Bsp19I CCATGG 2 cut(s) 85, 763
Bsp68I TCGCGA 1 cut(s) 1082
BspACI CCGC 6 cut(s) 166, 331, 534, 674, 827, 885
BspANI GGCC 2 cut(s) 540, 701
BspCNI CTCAG 8 cut(s) 291, 319, 564, 793, 823, 972, 988, 1087
BspDI ATCGAT 1 cut(s) 1010
BspFNI CGCG 1 cut(s) 1082
BspLI GGNNCC 3 cut(s) 138, 520, 1095
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 6 cut(s) 131, 144, 341, 927, 1015, 1146
BspT104I TTCGAA 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 331
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
BssNAI GTATAC 1 cut(s) 1285
BssT1I CCWWGG 3 cut(s) 85, 514, 763
Bst1107I GTATAC 1 cut(s) 1285
Bst2UI CCWGG 3 cut(s) 100, 286, 937
Bst4CI ACNGT 3 cut(s) 379, 753, 1165
BstAPI GCANNNNNTGC 3 cut(s) 437, 621, 1199
BstBI TTCGAA 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 1002
BstDSI CCRYGG 2 cut(s) 85, 763
BstF5I GGATG 3 cut(s) 817, 928, 966
BstFNI CGCG 1 cut(s) 1082
BstHHI GCGC 2 cut(s) 126, 1106
BstMAI GTCTC 2 cut(s) 1060, 1154
BstMCI CGRYCG 1 cut(s) 1303
BstMWI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
BstNI CCWGG 3 cut(s) 100, 286, 937
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 3 cut(s) 98, 284, 935
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 914
BstUI CGCG 1 cut(s) 1082
BstV1I GCAGC 6 cut(s) 108, 161, 683, 1004, 1088, 1205
BstV2I GAAGAC 2 cut(s) 108, 583
BstX2I RGATCY 3 cut(s) 136, 932, 1138
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 3 cut(s) 136, 932, 1138
BstZ17I GTATAC 1 cut(s) 1285
Bsu15I ATCGAT 1 cut(s) 1010
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 540, 701
BsuTUI ATCGAT 1 cut(s) 1010
BtgI CCRYGG 2 cut(s) 85, 763
BtgZI GCGATG 1 cut(s) 1097
BtsCI GGATG 3 cut(s) 817, 928, 966
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 3 cut(s) 366, 1170, 1188
BtuMI TCGCGA 1 cut(s) 1082
Cac8I GCNNGC 1 cut(s) 1002
CfoI GCGC 2 cut(s) 126, 1106
Cfr13I GGNCC 4 cut(s) 371, 511, 676, 699
ClaI ATCGAT 1 cut(s) 1010
CseI GACGC 2 cut(s) 102, 915
Csp6I GTAC 1 cut(s) 974
CviAII CATG 4 cut(s) 86, 628, 764, 1135
CviQI GTAC 1 cut(s) 974
Eco130I CCWWGG 3 cut(s) 85, 514, 763
Eco47I GGWCC 3 cut(s) 371, 511, 676
Eco81I CCTNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 98, 284, 935
EcoT14I CCWWGG 3 cut(s) 85, 514, 763
ErhI CCWWGG 3 cut(s) 85, 514, 763
FaeI CATG 4 cut(s) 89, 631, 767, 1138
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 3 cut(s) 226, 671, 1228
FatI CATG 4 cut(s) 85, 627, 763, 1134
FbaI TGATCA 2 cut(s) 423, 1185
FblI GTMKAC 1 cut(s) 1284
Fnu4HI GCNGC 7 cut(s) 122, 150, 672, 828, 993, 1102, 1194
FokI GGATG 3 cut(s) 824, 935, 953
Fsp4HI GCNGC 7 cut(s) 122, 150, 672, 828, 993, 1102, 1194
FspBI CTAG 3 cut(s) 146, 611, 1178
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 125, 1105
GluI GCNGC 7 cut(s) 122, 150, 672, 828, 993, 1102, 1194
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 865
HaeIII GGCC 2 cut(s) 540, 701
HgaI GACGC 2 cut(s) 102, 915
HhaI GCGC 2 cut(s) 126, 1106
Hin1II CATG 4 cut(s) 89, 631, 767, 1138
Hin6I GCGC 2 cut(s) 124, 1104
HinP1I GCGC 2 cut(s) 124, 1104
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 5 cut(s) 659, 757, 776, 979, 1269
HpaI GTTAAC 1 cut(s) 1132
HphI GGTGA 5 cut(s) 85, 307, 752, 815, 874
Hpy166II GTNNAC 5 cut(s) 76, 592, 756, 1132, 1285
Hpy188III TCNNGA 5 cut(s) 818, 844, 930, 1027, 1081
Hpy8I GTNNAC 5 cut(s) 76, 592, 756, 1132, 1285
HpyAV CCTTC 5 cut(s) 150, 242, 512, 611, 1225
HpyCH4III ACNGT 3 cut(s) 379, 753, 1165
HpyCH4V TGCA 7 cut(s) 196, 311, 398, 665, 734, 992, 1070
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
Hsp92II CATG 4 cut(s) 89, 631, 767, 1138
HspAI GCGC 2 cut(s) 124, 1104
Ksp22I TGATCA 2 cut(s) 423, 1185
KspAI GTTAAC 1 cut(s) 1132
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 6 cut(s) 108, 161, 683, 1004, 1088, 1205
LweI GCATC 2 cut(s) 814, 913
MaeI CTAG 3 cut(s) 146, 611, 1178
MaeIII GTNAC 1 cut(s) 871
MbiI CCGCTC 1 cut(s) 331
MboII GAAGA 5 cut(s) 108, 588, 736, 833, 1270
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 136, 932, 1138
MhlI GDGCHC 2 cut(s) 914, 1002
MluCI AATT 2 cut(s) 566, 915
MlyI GAGTC 2 cut(s) 653, 751
MmeI TCCRAC 7 cut(s) 33, 114, 398, 522, 772, 1017, 1097
MseI TTAA 1 cut(s) 1131
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 3 cut(s) 152, 674, 995
MspR9I CCNGG 3 cut(s) 100, 286, 937
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 3 cut(s) 23, 400, 734
MvaI CCWGG 3 cut(s) 100, 286, 937
MvnI CGCG 1 cut(s) 1082
MwoI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
NcoI CCATGG 2 cut(s) 85, 763
NlaIII CATG 4 cut(s) 89, 631, 767, 1138
NlaIV GGNNCC 3 cut(s) 138, 520, 1095
NmuCI GTSAC 1 cut(s) 871
NruI TCGCGA 1 cut(s) 1082
NsbI TGCGCA 1 cut(s) 125
NspI RCATGY 1 cut(s) 631
NspV TTCGAA 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 3 cut(s) 23, 400, 734
PfeI GAWTC 3 cut(s) 776, 979, 1269
PflFI GACNNNGTC 1 cut(s) 1165
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 7 cut(s) 123, 151, 673, 829, 994, 1103, 1195
Ple19I CGATCG 1 cut(s) 1303
PleI GAGTC 2 cut(s) 653, 751
PpsI GAGTC 2 cut(s) 653, 751
Psp6I CCWGG 3 cut(s) 98, 284, 935
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 3 cut(s) 98, 284, 935
PspN4I GGNNCC 3 cut(s) 138, 520, 1095
PspPI GGNCC 4 cut(s) 371, 511, 676, 699
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 3 cut(s) 136, 932, 1138
PsyI GACNNNGTC 1 cut(s) 1165
PvuI CGATCG 1 cut(s) 1303
PvuII CAGCTG 2 cut(s) 152, 995
RruI TCGCGA 1 cut(s) 1082
RsaI GTAC 1 cut(s) 975
RsaNI GTAC 1 cut(s) 974
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 1131
SatI GCNGC 7 cut(s) 122, 150, 672, 828, 993, 1102, 1194
Sau96I GGNCC 4 cut(s) 371, 511, 676, 699
SchI GAGTC 2 cut(s) 653, 751
ScrFI CCNGG 3 cut(s) 100, 286, 937
SduI GDGCHC 2 cut(s) 914, 1002
SfaNI GCATC 2 cut(s) 814, 913
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 774
SinI GGWCC 3 cut(s) 371, 511, 676
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 467, 694, 1025
SmoI CTYRAG 3 cut(s) 467, 694, 1025
Sse9I AATT 2 cut(s) 566, 915
SsiI CCGC 6 cut(s) 166, 331, 534, 674, 827, 885
SspMI CTAG 3 cut(s) 146, 611, 1178
StyD4I CCNGG 3 cut(s) 98, 284, 935
StyI CCWWGG 3 cut(s) 85, 514, 763
TaaI ACNGT 3 cut(s) 379, 753, 1165
TaqI TCGA 5 cut(s) 646, 774, 1010, 1299, 1303
TasI AATT 2 cut(s) 566, 915
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 3 cut(s) 776, 979, 1269
Tru1I TTAA 1 cut(s) 1131
Tru9I TTAA 1 cut(s) 1131
TscAI CASTG 3 cut(s) 373, 1170, 1188
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 6 cut(s) 121, 149, 671, 992, 1101, 1193
Tsp45I GTSAC 1 cut(s) 871
TspGWI ACGGA 1 cut(s) 1086
TspRI CASTG 3 cut(s) 373, 1170, 1188
Tth111I GACNNNGTC 1 cut(s) 1165
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 3 cut(s) 371, 511, 676
XapI RAATTY 1 cut(s) 566
XceI RCATGY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 1284
XspI CTAG 3 cut(s) 146, 611, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.