Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016363

Physical Location & Seq

Genomic Coordinates Forward (+)

10329854 .. 10333967

Gene Structure 4114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGTGAACCACATCAGGATTTTTTCTTTTTGGATAAAAGCTAAAGGAATTAGAAGAAGTTGCTCTATTCCAGTTTTGTTTGTGGCACCAACTTACAACATGGATTCGAACAAAGAACACCTCTTGGAAAATGGCAACTTGAAGGGCACAAGTAGTAACGAGGAGGAGGTTCACCATGGCATGACTGATAGACGATTGTCATCTTCTCCGCTGCAAAACAAGTCGTTTCCTACACTACTACCTTTTAGTGTGCAAAATGGGAAGGTTAGGAAGGTACTCATCAATTTTCAGGTTGTTCTTTTGGGGACCAAGCTTTCAGTACTCCTTCCCACCATTCCTCTATCCTTTGTTGCTGTCTACTGTGGCTTTGGAAAGGCCTGGGTTTTTTCTATGAGCTTGCTTGGACTAACCTTACTCGCTGAGCGAGTCAGCTTTCTCACAGAACAAGTATCATACTACACTGGTCCAACAGTGGGAGGTCTTCTAAATGCAACATTTGGAAATGCCACAGAGCTAATTATTGCAATTTCAGCTCTAAGTCAAAACAAATTGCAGTTGCTCAAGTACTCTCTCTTGGGTTCAGTTCTTTCAAATCTTCTTTTAGTCCTCGGGACGTCGCTTTTCTGTGGTGGCCTTGCCAACCTAAGAAGTGAGCAAAAATTTGAAAGAAGGCAGGCCCATGTGAACTCGCTCCTTCTAATGCTAGGTGCATTCTGTCACATGCTGCCTATGTTGCTTCCATATGCCGGGGACTCTACTGTAACAGAAGGCCAAACACTCGAGCTATCAAGGGCCCTTTGTATCATTATGCTGCTTTCATATGCTACATACCTGTTCTTCCAGTTATGGACTCACCGCACATTTTTCGAATCACTCGAAGAATCAAATGATGATGAGGATGATGATGTGGCTGTAGTAGCTTTCTGGAGTGGATTTGTTTGGTTATTTGTTGTTACAATCACCACAGCTTGGTTGTCTGAGTATGTGGTTGGCACAATAGAGGATGCATCAAAATCTTGGGGTTTGTCTGTGAGCTTCCTCAGCCTCATCTTGGTTCCAATTCTTGGAAATGCAGCTGAGCATGCAGGTTCAATCATATTTGCTCTTAAAAACAAGTTGGATATATCTTTAGGAATCTCTTTGGGATCTGCAACTCAGATCCTTATGTTCGTGGTGCCATCGTGCGTCGTAGTTGCTTGGATAATGGGCATTAACATGGATATTAACTTCAATCTCATCGAGACGGTGTCTCTTGCTCTAGCAGTGATCACCACATCAATTGCTCTACAGGATGGAACTTCCCATTATGTGAAAGGATTGGTTCTTATTCTCTGCTACATTGTTATTGGGATCTGCTTTTTTATATTCGAAACACCAATGGATGACAACGAGACGAAAAGGATGAACATGCACCGGAGACCGAAACCATGGATGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

480

Amino Acids

53.2

Weight (kDa)

6.38

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	126 - 283	8.4e-20	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	311 - 449	3.8e-19	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016363)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11490
malus_domestica	MD04G1151900.v1.1
prunus_persica	Prupe.6G277000_v2.0.a1
pyrus_communis	pycom04g13790
rosa_chinensis	RchiOBHm_Chr3g0463181
rosa_laevigata	RLG00000024805
rosa_roxburghii	Rroxscaffold_6G00416850 Rroxscaffold_6G00416870
rosa_rugosa	Rorug03G0062100.1
rosa_samantha	Rh3AG120300 Rh3BG124700 Rh3CG126700 Rh3DG125700
rosa_wichuraiana	Rw3G010180 Rw3G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	1076
AccB1I	GGYRCC	2 cut(s)	85, 1174
AccB7I	CCANNNNNTGG	2 cut(s)	969, 1064
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	2 cut(s)	209, 856
AclWI	GGATC	3 cut(s)	1153, 1153, 1358
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	614
AfaI	GTAC	3 cut(s)	276, 321, 566
AfiI	CCNNNNNNNGG	5 cut(s)	473, 746, 969, 1051, 1064
AgsI	TTSAA	5 cut(s)	142, 591, 665, 1092, 1231
AjnI	CCWGG	1 cut(s)	377
Alw26I	GTCTC	4 cut(s)	1235, 1254, 1385, 1411
AlwI	GGATC	3 cut(s)	1153, 1153, 1358
Ama87I	CYCGRG	2 cut(s)	608, 779
AoxI	GGCC	5 cut(s)	375, 631, 675, 769, 792
ApaI	GGGCCC	1 cut(s)	796
ApeKI	GCWGC	4 cut(s)	211, 724, 811, 1073
ApoI	RAATTY	1 cut(s)	659
AspS9I	GGNCC	5 cut(s)	306, 464, 676, 792, 793
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	5 cut(s)	16, 164, 845, 952, 1261
AsuII	TTCGAA	3 cut(s)	107, 867, 1368
AvaI	CYCGRG	2 cut(s)	608, 779
AvaII	GGWCC	2 cut(s)	306, 464
BaeGI	GKGCMC	2 cut(s)	149, 796
BanI	GGYRCC	2 cut(s)	85, 1174
BanII	GRGCYC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	4 cut(s)	198, 711, 798, 1085
BccI	CCATC	2 cut(s)	1186, 1286
BcgI	CGANNNNNNTGC	2 cut(s)	847, 881
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	1266
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	4 cut(s)	1235, 1254, 1385, 1411
BfaI	CTAG	2 cut(s)	704, 1259
BfmI	CTRYAG	2 cut(s)	912, 1286
BfuAI	ACCTGC	1 cut(s)	1076
BisI	GCNGC	4 cut(s)	212, 725, 812, 1074
BlpI	GCTNAGC	2 cut(s)	420, 1077
BlsI	GCNGC	4 cut(s)	213, 726, 813, 1075
BmcAI	AGTACT	2 cut(s)	321, 566
Bme1390I	CCNGG	2 cut(s)	379, 748
Bme18I	GGWCC	2 cut(s)	306, 464
BmeT110I	CYCGRG	2 cut(s)	608, 779
BmgT120I	GGNCC	5 cut(s)	306, 464, 676, 792, 793
BmiI	GGNNCC	5 cut(s)	87, 307, 794, 1056, 1176
BmrFI	CCNGG	2 cut(s)	379, 748
BmsI	GCATC	2 cut(s)	994, 1016
BoxI	GACNNNNGTC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	946
Bpu10I	CCTNAGC	1 cut(s)	1040
Bpu1102I	GCTNAGC	2 cut(s)	420, 1077
Bpu14I	TTCGAA	3 cut(s)	107, 867, 1368
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	748
BsaBI	GATNNNNATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	1411
BsaJI	CCNNGG	5 cut(s)	175, 378, 607, 747, 1427
BsaWI	WCCGGW	1 cut(s)	1413
Bsc4I	CCNNNNNNNGG	5 cut(s)	473, 746, 969, 1051, 1064
Bse1I	ACTGG	3 cut(s)	71, 466, 841
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	5 cut(s)	175, 378, 607, 747, 1427
BseGI	GGATG	6 cut(s)	904, 1009, 1297, 1387, 1407, 1437
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	5 cut(s)	473, 746, 969, 1051, 1064
BseMII	CTCAG	5 cut(s)	411, 969, 1054, 1068, 1169
BseNI	ACTGG	3 cut(s)	71, 466, 841
BseRI	GAGGAG	2 cut(s)	176, 179
BseSI	GKGCMC	2 cut(s)	149, 796
BseXI	GCAGC	4 cut(s)	198, 711, 798, 1085
BshFI	GGCC	5 cut(s)	377, 633, 677, 771, 794
BshNI	GGYRCC	2 cut(s)	85, 1174
BsiHKCI	CYCGRG	2 cut(s)	608, 779
BsiSI	CCGG	2 cut(s)	747, 1414
BslFI	GGGAC	3 cut(s)	319, 625, 764
BslI	CCNNNNNNNGG	5 cut(s)	473, 746, 969, 1051, 1064
BsmAI	GTCTC	4 cut(s)	1235, 1254, 1385, 1411
BsmBI	CGTCTC	2 cut(s)	1235, 1385
BsmFI	GGGAC	3 cut(s)	319, 625, 764
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	5 cut(s)	377, 633, 677, 771, 794
Bso31I	GGTCTC	1 cut(s)	1411
BsoBI	CYCGRG	2 cut(s)	608, 779
Bsp119I	TTCGAA	3 cut(s)	107, 867, 1368
Bsp120I	GGGCCC	1 cut(s)	792
Bsp1286I	GDGCHC	2 cut(s)	149, 796
Bsp143I	GATC	4 cut(s)	1145, 1158, 1266, 1350
Bsp1720I	GCTNAGC	2 cut(s)	420, 1077
Bsp19I	CCATGG	2 cut(s)	175, 1427
BspACI	CCGC	2 cut(s)	209, 856
BspANI	GGCC	5 cut(s)	377, 633, 677, 771, 794
BspCNI	CTCAG	5 cut(s)	412, 970, 1053, 1069, 1168
BspLI	GGNNCC	5 cut(s)	87, 307, 794, 1056, 1176
BspMI	ACCTGC	1 cut(s)	1076
BspPI	GGATC	3 cut(s)	1153, 1153, 1358
BspT104I	TTCGAA	3 cut(s)	107, 867, 1368
BspT107I	GGYRCC	2 cut(s)	85, 1174
BspTNI	GGTCTC	1 cut(s)	1411
BsrI	ACTGG	3 cut(s)	71, 466, 841
BssECI	CCNNGG	5 cut(s)	175, 378, 607, 747, 1427
BssMI	GATC	4 cut(s)	1145, 1158, 1266, 1350
BssNI	GRCGYC	1 cut(s)	614
BssT1I	CCWWGG	2 cut(s)	175, 1427
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	362, 472, 760, 1246
BstACI	GRCGYC	1 cut(s)	614
BstBI	TTCGAA	3 cut(s)	107, 867, 1368
BstC8I	GCNNGC	3 cut(s)	398, 675, 1083
BstDEI	CTNAG	7 cut(s)	420, 536, 644, 978, 1040, 1077, 1155
BstDSI	CCRYGG	2 cut(s)	175, 1427
BstF5I	GGATG	6 cut(s)	904, 1009, 1297, 1387, 1407, 1437
BstKTI	GATC	4 cut(s)	1148, 1161, 1269, 1353
BstMAI	GTCTC	4 cut(s)	1235, 1254, 1385, 1411
BstMBI	GATC	4 cut(s)	1145, 1158, 1266, 1350
BstMWI	GCNNNNNNNGC	5 cut(s)	530, 733, 917, 1041, 1082
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	3 cut(s)	724, 1085, 1411
BstPAI	GACNNNNGTC	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	377, 746
BstSFI	CTRYAG	2 cut(s)	912, 1286
BstSLI	GKGCMC	2 cut(s)	149, 796
BstV1I	GCAGC	4 cut(s)	198, 711, 798, 1085
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	3 cut(s)	1145, 1158, 1350
BstYI	RGATCY	3 cut(s)	1145, 1158, 1350
BsuRI	GGCC	5 cut(s)	377, 633, 677, 771, 794
BtgI	CCRYGG	2 cut(s)	175, 1427
BtsCI	GGATG	6 cut(s)	904, 1009, 1297, 1387, 1407, 1437
BtsI	GCAGTG	1 cut(s)	1269
BtsIMutI	CAGTG	3 cut(s)	459, 477, 1269
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	3 cut(s)	398, 675, 1083
Cfr13I	GGNCC	5 cut(s)	306, 464, 676, 792, 793
CseI	GACGC	1 cut(s)	1174
Csp6I	GTAC	3 cut(s)	275, 320, 565
CspCI	CAANNNNNGTGG	2 cut(s)	1261, 1296
CviAII	CATG	9 cut(s)	100, 176, 181, 680, 721, 1082, 1216, 1408, 1428
CviQI	GTAC	3 cut(s)	275, 320, 565
DdeI	CTNAG	7 cut(s)	420, 536, 644, 978, 1040, 1077, 1155
DpnI	GATC	4 cut(s)	1147, 1160, 1268, 1352
DpnII	GATC	4 cut(s)	1145, 1158, 1266, 1350
Eco130I	CCWWGG	2 cut(s)	175, 1427
Eco147I	AGGCCT	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	796
Eco31I	GGTCTC	1 cut(s)	1411
Eco47I	GGWCC	2 cut(s)	306, 464
Eco88I	CYCGRG	2 cut(s)	608, 779
EcoO109I	RGGNCCY	2 cut(s)	792, 793
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	175, 1427
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	175, 1427
Esp3I	CGTCTC	2 cut(s)	1235, 1385
FaeI	CATG	9 cut(s)	103, 179, 184, 683, 724, 1085, 1219, 1411, 1431
FaqI	GGGAC	3 cut(s)	319, 625, 764
FatI	CATG	9 cut(s)	99, 175, 180, 679, 720, 1081, 1215, 1407, 1427
FauNDI	CATATG	2 cut(s)	742, 820
FbaI	TGATCA	1 cut(s)	1266
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	212, 725, 812, 1074
FokI	GGATG	5 cut(s)	911, 1016, 1304, 1394, 1414
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	4 cut(s)	212, 725, 812, 1074
FspBI	CTAG	2 cut(s)	704, 1259
GluI	GCNGC	4 cut(s)	212, 725, 812, 1074
GsuI	CTGGAG	1 cut(s)	946
HaeIII	GGCC	5 cut(s)	377, 633, 677, 771, 794
HapII	CCGG	2 cut(s)	747, 1414
HgaI	GACGC	1 cut(s)	1174
Hin1I	GRCGYC	1 cut(s)	614
Hin1II	CATG	9 cut(s)	103, 179, 184, 683, 724, 1085, 1219, 1411, 1431
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	7 cut(s)	104, 426, 752, 850, 869, 881, 1134
HpaII	CCGG	2 cut(s)	747, 1414
HphI	GGTGA	5 cut(s)	16, 164, 845, 952, 1261
Hpy166II	GTNNAC	4 cut(s)	7, 172, 358, 685
Hpy188I	TCNGA	2 cut(s)	979, 1158
Hpy188III	TCNNGA	4 cut(s)	16, 610, 925, 1240
Hpy8I	GTNNAC	4 cut(s)	7, 172, 358, 685
Hpy99I	CGWCG	2 cut(s)	619, 1190
HpyAV	CCTTC	7 cut(s)	136, 256, 265, 335, 663, 704, 761
HpyCH4III	ACNGT	4 cut(s)	362, 472, 760, 1246
HpyCH4IV	ACGT	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	530, 733, 917, 1041, 1082
HpyF3I	CTNAG	7 cut(s)	420, 536, 644, 978, 1040, 1077, 1155
HpySE526I	ACGT	1 cut(s)	614
Hsp92I	GRCGYC	1 cut(s)	614
Hsp92II	CATG	9 cut(s)	103, 179, 184, 683, 724, 1085, 1219, 1411, 1431
Ksp22I	TGATCA	1 cut(s)	1266
Kzo9I	GATC	4 cut(s)	1145, 1158, 1266, 1350
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	4 cut(s)	198, 711, 798, 1085
LweI	GCATC	2 cut(s)	994, 1016
MaeI	CTAG	2 cut(s)	704, 1259
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	4 cut(s)	155, 716, 760, 952
MalI	GATC	4 cut(s)	1147, 1160, 1268, 1352
MboI	GATC	4 cut(s)	1145, 1158, 1266, 1350
MboII	GAAGA	6 cut(s)	66, 195, 473, 587, 829, 890
MfeI	CAATTG	1 cut(s)	1278
MflI	RGATCY	3 cut(s)	1145, 1158, 1350
MhlI	GDGCHC	2 cut(s)	149, 796
MluCI	AATT	8 cut(s)	48, 283, 516, 525, 548, 659, 1059, 1278
MlyI	GAGTC	3 cut(s)	435, 746, 844
MmeI	TCCRAC	2 cut(s)	491, 1098
Mph1103I	ATGCAT	1 cut(s)	1009
MseI	TTAA	3 cut(s)	1107, 1212, 1224
MslI	CAYNNNNRTG	1 cut(s)	1214
MspA1I	CMGCKG	2 cut(s)	211, 1076
MspI	CCGG	2 cut(s)	747, 1414
MspR9I	CCNGG	2 cut(s)	379, 748
MunI	CAATTG	1 cut(s)	1278
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	5 cut(s)	530, 733, 917, 1041, 1082
NciI	CCSGG	1 cut(s)	748
NcoI	CCATGG	2 cut(s)	175, 1427
NdeI	CATATG	2 cut(s)	742, 820
NdeII	GATC	4 cut(s)	1145, 1158, 1266, 1350
NlaIII	CATG	9 cut(s)	103, 179, 184, 683, 724, 1085, 1219, 1411, 1431
NlaIV	GGNNCC	5 cut(s)	87, 307, 794, 1056, 1176
NmuCI	GTSAC	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	3 cut(s)	724, 1085, 1411
NspV	TTCGAA	3 cut(s)	107, 867, 1368
PaeI	GCATGC	1 cut(s)	1085
PaeR7I	CTCGAG	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	873
PctI	GAATGC	1 cut(s)	710
PfeI	GAWTC	4 cut(s)	104, 869, 881, 1134
PflFI	GACNNNGTC	1 cut(s)	1246
PflMI	CCANNNNNTGG	2 cut(s)	969, 1064
PkrI	GCNGC	4 cut(s)	213, 726, 813, 1075
PleI	GAGTC	3 cut(s)	434, 746, 844
PpsI	GAGTC	3 cut(s)	434, 746, 844
PshAI	GACNNNNGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	5 cut(s)	87, 307, 794, 1056, 1176
PspOMI	GGGCCC	1 cut(s)	792
PspPI	GGNCC	5 cut(s)	306, 464, 676, 792, 793
PspXI	VCTCGAGB	1 cut(s)	779
PsuI	RGATCY	3 cut(s)	1145, 1158, 1350
PsyI	GACNNNGTC	1 cut(s)	1246
PvuII	CAGCTG	1 cut(s)	1076
RsaI	GTAC	3 cut(s)	276, 321, 566
RsaNI	GTAC	3 cut(s)	275, 320, 565
RseI	CAYNNNNRTG	1 cut(s)	1214
SaqAI	TTAA	3 cut(s)	1107, 1212, 1224
SatI	GCNGC	4 cut(s)	212, 725, 812, 1074
Sau3AI	GATC	4 cut(s)	1145, 1158, 1266, 1350
Sau96I	GGNCC	5 cut(s)	306, 464, 676, 792, 793
ScaI	AGTACT	2 cut(s)	321, 566
SchI	GAGTC	3 cut(s)	435, 746, 844
ScrFI	CCNGG	2 cut(s)	379, 748
SduI	GDGCHC	2 cut(s)	149, 796
SfaNI	GCATC	2 cut(s)	994, 1016
SfcI	CTRYAG	2 cut(s)	912, 1286
Sfr274I	CTCGAG	1 cut(s)	779
SfuI	TTCGAA	3 cut(s)	107, 867, 1368
SinI	GGWCC	2 cut(s)	306, 464
SlaI	CTCGAG	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	1214
SmlI	CTYRAG	2 cut(s)	560, 779
SmoI	CTYRAG	2 cut(s)	560, 779
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	8 cut(s)	48, 283, 516, 525, 548, 659, 1059, 1278
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	209, 856
SspMI	CTAG	2 cut(s)	704, 1259
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	377, 746
StyI	CCWWGG	2 cut(s)	175, 1427
TaaI	ACNGT	4 cut(s)	362, 472, 760, 1246
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	6 cut(s)	107, 780, 867, 876, 1239, 1368
TaqII	GACCGA	1 cut(s)	1435
TasI	AATT	8 cut(s)	48, 283, 516, 525, 548, 659, 1059, 1278
TatI	WGTACW	2 cut(s)	319, 564
TfiI	GAWTC	4 cut(s)	104, 869, 881, 1134
Tru1I	TTAA	3 cut(s)	1107, 1212, 1224
Tru9I	TTAA	3 cut(s)	1107, 1212, 1224
TscAI	CASTG	3 cut(s)	466, 477, 1269
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	4 cut(s)	211, 724, 811, 1073
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	2 cut(s)	807, 1418
TspRI	CASTG	3 cut(s)	466, 477, 1269
Tth111I	GACNNNGTC	1 cut(s)	1246
Van91I	CCANNNNNTGG	2 cut(s)	969, 1064
VpaK11BI	GGWCC	2 cut(s)	306, 464
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	3 cut(s)	724, 1085, 1411
XhoI	CTCGAG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	2 cut(s)	704, 1259
ZraI	GACGTC	1 cut(s)	615
ZrmI	AGTACT	2 cut(s)	321, 566
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.