Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016363

Physical Location & Seq

Genomic Coordinates Reverse (-)

38732770 .. 38738405

Gene Structure 5636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTAGGTGCACTCTGTCATATGCTGCCTATGTTGCTTCAATATGCCGGGGACTGGATTGTAACAGGAGGGCAAACACTCGAGCTATCAAGGGCCCTTGGTATCATTATGCTGCTTTCATATGCTACATACCTGTTCTTCCAGTTATGGACTGACCGCACATTTTTTGAATCACTCGAAGATGCATCAAAACCTTGGGGTTTGTCTGTGAGCTTCCTCAACCTCATATTGGTTTCAATTCTTGGAAATGCAGCAGAGCATGCAGGCTCAATCATATTTGCTCTTAAAAACAAGTTGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAACATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

6.82

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016363)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11490
malus_domestica	MD04G1151900.v1.1
prunus_persica	Prupe.6G277000_v2.0.a1
pyrus_communis	pycom04g13790
rosa_chinensis	RchiOBHm_Chr3g0463181
rosa_laevigata	RLG00000024805
rosa_roxburghii	Rroxscaffold_6G00416850 Rroxscaffold_6G00416870
rosa_rugosa	Rorug03G0062100.1
rosa_samantha	Rh3AG120300 Rh3BG124700 Rh3CG126700 Rh3DG125700
rosa_wichuraiana	Rw3G010180 Rw3G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	54, 229
AgsI	TTSAA	3 cut(s)	41, 170, 237
AluBI	AGCT	3 cut(s)	85, 213, 350
AluI	AGCT	3 cut(s)	85, 213, 350
Alw21I	GWGCWC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	93
ApaI	GGGCCC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	3 cut(s)	25, 112, 251
AspS9I	GGNCC	2 cut(s)	93, 94
AsuC2I	CCSGG	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	80
BaeGI	GKGCMC	2 cut(s)	13, 97
BanII	GRGCYC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	12, 99, 263
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	3 cut(s)	5, 351, 430
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	26, 113, 252
BlsI	GCNGC	3 cut(s)	27, 114, 253
Bme1390I	CCNGG	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	93, 94
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	172, 194
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	48, 97, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 229
Bse1I	ACTGG	2 cut(s)	59, 142
BseDI	CCNNGG	3 cut(s)	48, 97, 194
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	54, 229
BseNI	ACTGG	2 cut(s)	59, 142
BseSI	GKGCMC	2 cut(s)	13, 97
BseXI	GCAGC	3 cut(s)	12, 99, 263
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	54, 229
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	80
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	13, 97
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	59, 142
BssECI	CCNNGG	3 cut(s)	48, 97, 194
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	2 cut(s)	97, 194
Bst2BI	CACGAG	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	261, 265
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 260
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	13, 97
BstV1I	GCAGC	3 cut(s)	12, 99, 263
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	261, 265
Cfr13I	GGNCC	2 cut(s)	93, 94
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	260, 334
CviJI	RGCY	5 cut(s)	85, 95, 213, 267, 350
CviKI_1	RGCY	5 cut(s)	85, 95, 213, 267, 350
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	97, 194
Eco24I	GRGCYC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	80
EcoO109I	RGGNCCY	2 cut(s)	93, 94
EcoT14I	CCWWGG	2 cut(s)	97, 194
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	97, 194
FaeI	CATG	2 cut(s)	263, 337
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	259, 333
FauNDI	CATATG	2 cut(s)	21, 121
Fnu4HI	GCNGC	3 cut(s)	26, 113, 252
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	26, 113, 252
FspBI	CTAG	3 cut(s)	5, 351, 430
GluI	GCNGC	3 cut(s)	26, 113, 252
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	263, 337
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	170, 330
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	11, 315
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	11, 315
HpyCH4V	TGCA	5 cut(s)	11, 185, 251, 263, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 260
Hsp92II	CATG	2 cut(s)	263, 337
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	40, 51, 61, 146, 155, 249, 312
Lsp1109I	GCAGC	3 cut(s)	12, 99, 263
LweI	GCATC	2 cut(s)	172, 194
MaeI	CTAG	3 cut(s)	5, 351, 430
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	130, 191, 405
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	13, 97
MluCI	AATT	3 cut(s)	237, 399, 413
MnlI	CCTC	4 cut(s)	62, 227, 233, 337
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	2 cut(s)	285, 384
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	34, 260
NciI	CCSGG	1 cut(s)	49
NdeI	CATATG	2 cut(s)	21, 121
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	263, 337
NlaIV	GGNNCC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	170, 330
PkrI	GCNGC	3 cut(s)	27, 114, 253
PspN4I	GGNNCC	1 cut(s)	95
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	93, 94
PspXI	VCTCGAGB	1 cut(s)	80
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	285, 384
SatI	GCNGC	3 cut(s)	26, 113, 252
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	93, 94
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	13, 97
SetI	ASST	7 cut(s)	10, 87, 135, 196, 215, 225, 352
SfaNI	GCATC	2 cut(s)	172, 194
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	3 cut(s)	237, 399, 413
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	3 cut(s)	5, 351, 430
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	97, 194
TaqI	TCGA	2 cut(s)	81, 177
TasI	AATT	3 cut(s)	237, 399, 413
TfiI	GAWTC	2 cut(s)	170, 330
Tru1I	TTAA	2 cut(s)	285, 384
Tru9I	TTAA	2 cut(s)	285, 384
TseI	GCWGC	3 cut(s)	25, 112, 251
TspDTI	ATGAA	1 cut(s)	108
VneI	GTGCAC	1 cut(s)	9
XceI	RCATGY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	80
XspI	CTAG	3 cut(s)	5, 351, 430
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.