pycom04g13790

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
16718626 .. 16722533
3908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13790.2

Sequence Viewer

Length: 1377 bp
ATGGCTTCCAACCAAGAATGCCTCTTGGAAAACGGCAACCCTATCAATGACACAAGGGAGGAGGAGGAGGAGGTGAACCACCACCATGGCAGGACAGCCAGGCAAATGTCAGCGTCTTCGCTGCGCAGAAAGTCGGATCCTTCACTAGCAAATGGTGTCCAGAACCGCCACCTTAGGCAGTTGCTCGTAAATCTTCAAGTTGTTCTTTTTGGGACTAAGCTTTCAGTTCTCCTTCCCACCATTCCTCTATCCATTATTGCTGTGTGCTATGGCTTTGGAAAGCCTTGGATTTTCGCTCTGAGCTTACTTGCAATAACCTTACTTGCCGAGCGGATCAGTTTCCTTACAGAACAAATATCATACTATACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACATTTGGTAATGCCACAGAGCTGATCATAGCAATATCTGCTCTAAGCCAAAATAACATAGCTTTGCTCAAGTATTCTCTCTTGGGTTCAGTTCTTTCTAGCCTTCTCTTGGTCCTTGGCACCTCCCTTTTCTGCGGTGGCCTTGCCAACCTCAGAGGGGAGCAAAAATTTGAAAGAAGACAGGCGAATGTGAACTCTCTCCTTCTACTGCTAGGCACATTCTGCCACATGCTACCGATGTTGCTTCGATACGCTGGGGACTCTGCAGTAGCAGCGGACCAAACACTCCAAATCTCAAGGGCCTTTAGTATCGTAATGCTACTTTCTTATACTGCATTCTTATTCTTCCAACTGTGGACTCACCATGGATATTTCGAATCTCAGCAAGTATCGGAAGTTGATGGCGACAAGGATGTTCAAGAAGATGTGGCTGAGGTCGGTTTCTGGAGTGGATTTTCTTGGTTGTTTGTTGTCACTACCATCACAGCTTTGCTGTCTGAGTATGTGGTGGGCACAATTGAGGATGCGTCAAGATCCTGGGGTTTGTCAGTCAGCTTCCTCAGCCTCATCCTTGTACCGATTCTTGGAAATGCAGCTGAGCATGCAGCATCGATCATATTTGCTCTCAAGAACAAGTTGGACATATCTTTAGCAGTCTCTTTGGGGTCTGCAACTCAGATTGCAATGTTCGTGGTTCCGTGCTGCGCTGTCGTTGGTTGGATAATGGGAGTTAACATGGATCTGAACTTCAATCTGATTGAGACAGTGTCATTTGCTCTAGCAGTGATCACAGCAGCCTTTGCTCTACAAGATGGGACTTCACATTATGTGAAAGGATTGGTTCTTATTCTCTGCTACATTGTCATTGGAATCTGCTTCTTCGTATACGAAACACCCCTCGATCGGCGCGAACGGAAGGTAAAAAGAGGCAACAAACAAATAGCTAGCATCAACTTGATGAGACCAGTTATGAATTAA

Protein Analysis

459

Amino Acids

50.21

Weight (kDa)

6.15

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016363)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 1284
AccII CGCG 1 cut(s) 1308
AciI CCGC 4 cut(s) 166, 331, 534, 674
AclWI GGATC 5 cut(s) 131, 144, 341, 927, 1146
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 1 cut(s) 975
AfiI CCNNNNNNNGG 5 cut(s) 380, 508, 556, 983, 1302
AgsI TTSAA 4 cut(s) 197, 572, 818, 1150
AjnI CCWGG 2 cut(s) 98, 935
AluBI AGCT 8 cut(s) 220, 303, 421, 461, 887, 954, 995, 1343
AluI AGCT 8 cut(s) 220, 303, 421, 461, 887, 954, 995, 1343
Alw26I GTCTC 3 cut(s) 1060, 1154, 1354
AlwI GGATC 5 cut(s) 131, 144, 341, 927, 1146
AoxI GGCC 2 cut(s) 538, 699
ApeKI GCWGC 6 cut(s) 121, 671, 992, 1004, 1101, 1193
ApoI RAATTY 1 cut(s) 566
AspLEI GCGC 3 cut(s) 126, 1106, 1308
AspS9I GGNCC 4 cut(s) 371, 511, 676, 699
AsuHPI GGTGA 2 cut(s) 85, 752
AsuII TTCGAA 1 cut(s) 774
AsuNHI GCTAGC 1 cut(s) 1343
AvaII GGWCC 3 cut(s) 371, 511, 676
AxyI CCTNAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 518
BbsI GAAGAC 2 cut(s) 108, 583
BbvCI CCTCAGC 2 cut(s) 831, 959
BbvI GCAGC 6 cut(s) 108, 683, 1004, 1016, 1088, 1205
BccI CCATC 3 cut(s) 794, 887, 1205
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 100, 937
BclI TGATCA 2 cut(s) 423, 1185
BcoDI GTCTC 3 cut(s) 1060, 1154, 1354
BfaI CTAG 5 cut(s) 146, 498, 611, 1178, 1344
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 6 cut(s) 122, 672, 993, 1005, 1102, 1194
BlpI GCTNAGC 1 cut(s) 996
BlsI GCNGC 6 cut(s) 123, 673, 994, 1006, 1103, 1195
Bme1390I CCNGG 2 cut(s) 100, 937
Bme18I GGWCC 3 cut(s) 371, 511, 676
BmgT120I GGNCC 4 cut(s) 371, 511, 676, 699
BmiI GGNNCC 3 cut(s) 138, 520, 1095
BmrFI CCNGG 2 cut(s) 100, 937
BmsI GCATC 3 cut(s) 913, 1016, 1356
BmtI GCTAGC 1 cut(s) 1347
BpiI GAAGAC 2 cut(s) 108, 583
BpmI CTGGAG 1 cut(s) 865
Bpu10I CCTNAGC 2 cut(s) 831, 959
Bpu1102I GCTNAGC 1 cut(s) 996
Bpu14I TTCGAA 1 cut(s) 774
BpuEI CTTGAG 3 cut(s) 452, 679, 1010
Bsa29I ATCGAT 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 1354
BsaJI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
Bsc4I CCNNNNNNNGG 5 cut(s) 380, 508, 556, 983, 1302
Bse1I ACTGG 2 cut(s) 373, 1364
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 1089
BseBI CCWGG 2 cut(s) 100, 937
BseCI ATCGAT 1 cut(s) 1010
BseDI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
BseGI GGATG 3 cut(s) 817, 928, 966
BseLI CCNNNNNNNGG 5 cut(s) 380, 508, 556, 983, 1302
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 8 cut(s) 290, 565, 794, 822, 888, 973, 987, 1088
BseNI ACTGG 2 cut(s) 373, 1364
BseRI GAGGAG 4 cut(s) 74, 77, 80, 83
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 6 cut(s) 108, 683, 1004, 1016, 1088, 1205
BseYI CCCAGC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 1308
Bsh1285I CGRYCG 1 cut(s) 1303
BshFI GGCC 2 cut(s) 540, 701
BshNI GGYRCC 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 1010
BsiEI CGRYCG 1 cut(s) 1303
BslFI GGGAC 3 cut(s) 226, 671, 1228
BslI CCNNNNNNNGG 5 cut(s) 380, 508, 556, 983, 1302
BsmAI GTCTC 3 cut(s) 1060, 1154, 1354
BsmFI GGGAC 3 cut(s) 226, 671, 1228
BsmI GAATGC 3 cut(s) 23, 400, 734
BsnI GGCC 2 cut(s) 540, 701
Bso31I GGTCTC 1 cut(s) 1354
Bsp119I TTCGAA 1 cut(s) 774
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
Bsp1720I GCTNAGC 1 cut(s) 996
Bsp19I CCATGG 2 cut(s) 85, 763
BspACI CCGC 4 cut(s) 166, 331, 534, 674
BspANI GGCC 2 cut(s) 540, 701
BspCNI CTCAG 8 cut(s) 291, 564, 793, 823, 889, 972, 988, 1087
BspDI ATCGAT 1 cut(s) 1010
BspFNI CGCG 1 cut(s) 1308
BspLI GGNNCC 3 cut(s) 138, 520, 1095
BspMAI CTGCAG 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 1347
BspPI GGATC 5 cut(s) 131, 144, 341, 927, 1146
BspT104I TTCGAA 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 1354
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 1089
BsrI ACTGG 2 cut(s) 373, 1364
BssECI CCNNGG 5 cut(s) 85, 284, 514, 763, 936
BssMI GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
BssNAI GTATAC 1 cut(s) 1285
BssT1I CCWWGG 4 cut(s) 85, 284, 514, 763
Bst1107I GTATAC 1 cut(s) 1285
Bst2UI CCWGG 2 cut(s) 100, 937
Bst4CI ACNGT 3 cut(s) 379, 753, 1165
BstAPI GCANNNNNTGC 3 cut(s) 437, 621, 1199
BstBI TTCGAA 1 cut(s) 774
BstC8I GCNNGC 2 cut(s) 1002, 1345
BstDSI CCRYGG 2 cut(s) 85, 763
BstF5I GGATG 3 cut(s) 817, 928, 966
BstFNI CGCG 1 cut(s) 1308
BstHHI GCGC 3 cut(s) 126, 1106, 1308
BstKTI GATC 8 cut(s) 139, 336, 426, 935, 1014, 1141, 1188, 1303
BstMAI GTCTC 3 cut(s) 1060, 1154, 1354
BstMBI GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
BstMCI CGRYCG 1 cut(s) 1303
BstMWI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
BstNI CCWGG 2 cut(s) 100, 937
BstNSI RCATGY 2 cut(s) 631, 1004
BstSCI CCNGG 2 cut(s) 98, 935
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 914
BstUI CGCG 1 cut(s) 1308
BstV1I GCAGC 6 cut(s) 108, 683, 1004, 1016, 1088, 1205
BstV2I GAAGAC 2 cut(s) 108, 583
BstX2I RGATCY 3 cut(s) 136, 932, 1138
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 3 cut(s) 136, 932, 1138
BstZ17I GTATAC 1 cut(s) 1285
Bsu15I ATCGAT 1 cut(s) 1010
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 540, 701
BsuTUI ATCGAT 1 cut(s) 1010
BtgI CCRYGG 2 cut(s) 85, 763
BtsCI GGATG 3 cut(s) 817, 928, 966
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 2 cut(s) 1170, 1188
Cac8I GCNNGC 2 cut(s) 1002, 1345
CfoI GCGC 3 cut(s) 126, 1106, 1308
Cfr13I GGNCC 4 cut(s) 371, 511, 676, 699
ClaI ATCGAT 1 cut(s) 1010
CseI GACGC 2 cut(s) 102, 915
Csp6I GTAC 1 cut(s) 974
CspCI CAANNNNNGTGG 2 cut(s) 1071, 1106
CviAII CATG 5 cut(s) 86, 628, 764, 1001, 1135
CviQI GTAC 1 cut(s) 974
DpnI GATC 8 cut(s) 138, 335, 425, 934, 1013, 1140, 1187, 1302
DpnII GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
Eco130I CCWWGG 4 cut(s) 85, 284, 514, 763
Eco31I GGTCTC 1 cut(s) 1354
Eco47I GGWCC 3 cut(s) 371, 511, 676
Eco81I CCTNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 98, 935
EcoT14I CCWWGG 4 cut(s) 85, 284, 514, 763
ErhI CCWWGG 4 cut(s) 85, 284, 514, 763
FaeI CATG 5 cut(s) 89, 631, 767, 1004, 1138
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 3 cut(s) 226, 671, 1228
FatI CATG 5 cut(s) 85, 627, 763, 1000, 1134
FbaI TGATCA 2 cut(s) 423, 1185
FblI GTMKAC 1 cut(s) 1284
Fnu4HI GCNGC 6 cut(s) 122, 672, 993, 1005, 1102, 1194
FokI GGATG 3 cut(s) 824, 935, 953
Fsp4HI GCNGC 6 cut(s) 122, 672, 993, 1005, 1102, 1194
FspBI CTAG 5 cut(s) 146, 498, 611, 1178, 1344
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 3 cut(s) 125, 1105, 1307
GluI GCNGC 6 cut(s) 122, 672, 993, 1005, 1102, 1194
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 865
HaeIII GGCC 2 cut(s) 540, 701
HgaI GACGC 2 cut(s) 102, 915
HhaI GCGC 3 cut(s) 126, 1106, 1308
Hin1II CATG 5 cut(s) 89, 631, 767, 1004, 1138
Hin6I GCGC 3 cut(s) 124, 1104, 1306
HinP1I GCGC 3 cut(s) 124, 1104, 1306
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 5 cut(s) 659, 757, 776, 979, 1269
HpaI GTTAAC 1 cut(s) 1132
HphI GGTGA 2 cut(s) 85, 752
Hpy166II GTNNAC 5 cut(s) 76, 592, 756, 1132, 1285
Hpy188I TCNGA 9 cut(s) 136, 300, 393, 554, 793, 898, 1077, 1143, 1155
Hpy188III TCNNGA 5 cut(s) 160, 818, 844, 930, 1027
Hpy8I GTNNAC 5 cut(s) 76, 592, 756, 1132, 1285
HpyAV CCTTC 5 cut(s) 150, 242, 512, 611, 1309
HpyCH4III ACNGT 3 cut(s) 379, 753, 1165
HpyCH4V TGCA 8 cut(s) 311, 398, 665, 734, 992, 1004, 1070, 1082
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
Hsp92II CATG 5 cut(s) 89, 631, 767, 1004, 1138
HspAI GCGC 3 cut(s) 124, 1104, 1306
Ksp22I TGATCA 2 cut(s) 423, 1185
KspAI GTTAAC 1 cut(s) 1132
Kzo9I GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 6 cut(s) 108, 683, 1004, 1016, 1088, 1205
LweI GCATC 3 cut(s) 913, 1016, 1356
MaeI CTAG 5 cut(s) 146, 498, 611, 1178, 1344
MaeIII GTNAC 1 cut(s) 871
MalI GATC 8 cut(s) 138, 335, 425, 934, 1013, 1140, 1187, 1302
MbiI CCGCTC 1 cut(s) 331
MboI GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
MboII GAAGA 6 cut(s) 108, 185, 588, 736, 833, 1270
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 136, 932, 1138
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 3 cut(s) 566, 915, 1372
MlyI GAGTC 2 cut(s) 653, 751
MmeI TCCRAC 7 cut(s) 33, 114, 361, 398, 772, 1017, 1097
MseI TTAA 2 cut(s) 1131, 1375
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 674, 995
MspR9I CCNGG 2 cut(s) 100, 937
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 3 cut(s) 23, 400, 734
MvaI CCWGG 2 cut(s) 100, 937
MvnI CGCG 1 cut(s) 1308
MwoI GCNNNNNNNGC 6 cut(s) 437, 621, 671, 960, 1001, 1199
NcoI CCATGG 2 cut(s) 85, 763
NdeII GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
NheI GCTAGC 1 cut(s) 1343
NlaIII CATG 5 cut(s) 89, 631, 767, 1004, 1138
NlaIV GGNNCC 3 cut(s) 138, 520, 1095
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 871
NsbI TGCGCA 1 cut(s) 125
NspI RCATGY 2 cut(s) 631, 1004
NspV TTCGAA 1 cut(s) 774
PaeI GCATGC 1 cut(s) 1004
PcsI WCGNNNNNNNCGW 1 cut(s) 1305
PctI GAATGC 3 cut(s) 23, 400, 734
PfeI GAWTC 3 cut(s) 776, 979, 1269
PflFI GACNNNGTC 1 cut(s) 1165
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 6 cut(s) 123, 673, 994, 1006, 1103, 1195
Ple19I CGATCG 1 cut(s) 1303
PleI GAGTC 2 cut(s) 653, 751
PpsI GAGTC 2 cut(s) 653, 751
Psp6I CCWGG 2 cut(s) 98, 935
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 2 cut(s) 98, 935
PspN4I GGNNCC 3 cut(s) 138, 520, 1095
PspPI GGNCC 4 cut(s) 371, 511, 676, 699
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 3 cut(s) 136, 932, 1138
PsyI GACNNNGTC 1 cut(s) 1165
PvuI CGATCG 1 cut(s) 1303
PvuII CAGCTG 1 cut(s) 995
RsaI GTAC 1 cut(s) 975
RsaNI GTAC 1 cut(s) 974
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 1131, 1375
SatI GCNGC 6 cut(s) 122, 672, 993, 1005, 1102, 1194
Sau3AI GATC 8 cut(s) 136, 333, 423, 932, 1011, 1138, 1185, 1300
Sau96I GGNCC 4 cut(s) 371, 511, 676, 699
SchI GAGTC 2 cut(s) 653, 751
ScrFI CCNGG 2 cut(s) 100, 937
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 913, 1016, 1356
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 774
SinI GGWCC 3 cut(s) 371, 511, 676
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 467, 694, 1025
SmoI CTYRAG 3 cut(s) 467, 694, 1025
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 3 cut(s) 566, 915, 1372
SsiI CCGC 4 cut(s) 166, 331, 534, 674
SspMI CTAG 5 cut(s) 146, 498, 611, 1178, 1344
StyD4I CCNGG 2 cut(s) 98, 935
StyI CCWWGG 4 cut(s) 85, 284, 514, 763
TaaI ACNGT 3 cut(s) 379, 753, 1165
TaqI TCGA 4 cut(s) 646, 774, 1010, 1299
TasI AATT 3 cut(s) 566, 915, 1372
TfiI GAWTC 3 cut(s) 776, 979, 1269
Tru1I TTAA 2 cut(s) 1131, 1375
Tru9I TTAA 2 cut(s) 1131, 1375
TscAI CASTG 2 cut(s) 1170, 1188
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 6 cut(s) 121, 671, 992, 1004, 1101, 1193
Tsp45I GTSAC 1 cut(s) 871
TspGWI ACGGA 2 cut(s) 1086, 1327
TspRI CASTG 2 cut(s) 1170, 1188
Tth111I GACNNNGTC 1 cut(s) 1165
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 3 cut(s) 371, 511, 676
XapI RAATTY 1 cut(s) 566
XceI RCATGY 2 cut(s) 631, 1004
XmiI GTMKAC 1 cut(s) 1284
XspI CTAG 5 cut(s) 146, 498, 611, 1178, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.