FvH4_6g12170

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016089
Physical Location & Seq
Forward (+)
7359641 .. 7362523
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12170.t1

Sequence Viewer

Length: 879 bp
ATGGAAGGTTCGAGCAACGGCGGGATGCTGTACCACGAGGTGCAGGAGTCGAAGCTGTGCGCCGTGCATTGCGTCAACACGGCGTTGCAGGGCCCTTTCTTCTCCGAATTCGATTTGGCCGCCCTCGCCTCCGATCTCGATCGAAAGGAGCGCCAGATGATGCACCTCTCTGTCCACGCCGGTGCTCCCCCCGCCGCCGCCGGCGATTTCCTCTCCGAAGAGTCCCACAACGTCTCCCTCGACGGCGATTTCAGCATCCAGGTACTAGAAAAGGCTTTAGAGGTTTGGGATCTGCAGGTCATCCCCCTTGATTCTCCAGTTGCAGAGCCTGCTCAGATCGATCCTGAGCTGGAGAATGGGTTTATCTGTCATTTACAGGATCATTGGTTCTGTATCAGGAAAGTGAATGGGGAGTGGTATAATTTCGACAGTCTGTATGCAGCCCCTCTTCATCTTTCAAAGTTTTACCTCTCCGCCTATTTGGACACACTAAAGGGCTCTGGTTGGAGCATTTTCCTGGTGAGAGGAAACTTCCCAAAAGAGTGTCCCATCTCATCCTCTGAAGCTTCCAATGGGTATGGTCAGTGGCTTTCACCTGAAGATGCCGACCGAATAACTAAATCTTGCAACTCCACAAATGCTCCACGCCAGACTCAGAGAACAAATTGGCCTCGGCAACCTTCAGACCAATTCCTATCCACCGAGGAAGCGGAACTCCTATCAGAGATGGAAGACGAGGACATGAAGGCTGCAATAGCTGCCAGTCTAATGGATTCTTCCCCAGCCGTGGCTGTGGCCAATGCCGGAGATAGCAACCCACAGACCGAAAGCTCAAACAGCCAAGAGAGCAAGATCAGCCAAGATAATAAAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

293

Amino Acids

32.12

Weight (kDa)

4.47

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 15 - 175 2.5e-53 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54130
fragaria_vesca FvH4_6g12170
malus_domestica MD04G1146200.v1.1 MD12G1159400.v1.1
prunus_persica Prupe.6G269800_v2.0.a1
pyrus_communis pycom04g13180
rosa_chinensis RchiOBHm_Chr3g0463971
rosa_laevigata RLG00000024731
rosa_multiflora Rmu_sc0006492.1_g000007
rosa_roxburghii Rroxscaffold_6G00416100
rosa_rugosa Rorug03G0069700
rosa_samantha Rh3AG126600 Rh3BG130800 Rh3DG132000
rosa_wichuraiana Rw3G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AciI CCGC 7 cut(s) 21, 120, 192, 195, 198, 474, 710
AclWI GGATC 3 cut(s) 297, 335, 387
AcoI YGGCCR 2 cut(s) 117, 795
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 3 cut(s) 582, 618, 666
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 32, 264
AfiI CCNNNNNNNGG 1 cut(s) 787
AgsI TTSAA 1 cut(s) 459
AjnI CCWGG 2 cut(s) 258, 516
AleI CACNNNNGTG 1 cut(s) 180
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 5 cut(s) 55, 349, 566, 758, 831
AluI AGCT 5 cut(s) 55, 349, 566, 758, 831
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 3 cut(s) 297, 335, 387
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 4 cut(s) 91, 117, 668, 795
ApaI GGGCCC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 440, 749, 758
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 2 cut(s) 62, 153
AspS9I GGNCC 2 cut(s) 91, 92
AsuHPI GGTGA 2 cut(s) 532, 585
BaeGI GKGCMC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 797
BanII GRGCYC 2 cut(s) 95, 500
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 452, 736, 745
BccI CCATC 2 cut(s) 557, 721
BceAI ACGGC 5 cut(s) 34, 47, 96, 259, 770
BciT130I CCWGG 2 cut(s) 260, 518
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 6 cut(s) 120, 195, 198, 441, 750, 759
BlsI GCNGC 6 cut(s) 121, 196, 199, 442, 751, 760
Bme1390I CCNGG 2 cut(s) 260, 518
BmgT120I GGNCC 2 cut(s) 91, 92
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 260, 518
BmsI GCATC 4 cut(s) 15, 150, 264, 592
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 2 cut(s) 300, 371
Bpu10I CCTNAGC 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 671, 702, 786
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 344, 374, 625, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse118I RCCGGY 2 cut(s) 179, 200
Bse1I ACTGG 2 cut(s) 317, 762
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 260, 518
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 671, 702, 786
BseGI GGATG 4 cut(s) 30, 255, 300, 554
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 3 cut(s) 336, 347, 668
BseNI ACTGG 2 cut(s) 317, 762
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 3 cut(s) 452, 736, 745
BseYI CCCAGC 1 cut(s) 781
BsgI GTGCAG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 142, 610
BshFI GGCC 4 cut(s) 93, 119, 670, 797
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 2 cut(s) 142, 610
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 3 cut(s) 180, 201, 804
BslFI GGGAC 2 cut(s) 208, 531
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 238
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 208, 531
BsnI GGCC 4 cut(s) 93, 119, 670, 797
Bsp120I GGGCCC 1 cut(s) 91
Bsp1286I GDGCHC 3 cut(s) 95, 187, 500
Bsp143I GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
BspACI CCGC 7 cut(s) 21, 120, 192, 195, 198, 474, 710
BspANI GGCC 4 cut(s) 93, 119, 670, 797
BspCNI CTCAG 3 cut(s) 337, 346, 667
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 3 cut(s) 297, 335, 387
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 2 cut(s) 179, 200
BsrI ACTGG 2 cut(s) 317, 762
BssAI RCCGGY 2 cut(s) 179, 200
BssECI CCNNGG 3 cut(s) 671, 702, 786
BssMI GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 260, 518
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 213, 453
BstAPI GCANNNNNTGC 2 cut(s) 329, 758
BstC8I GCNNGC 2 cut(s) 202, 330
BstDEI CTNAG 3 cut(s) 333, 345, 654
BstDSI CCRYGG 1 cut(s) 786
BstF5I GGATG 4 cut(s) 30, 255, 300, 554
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 62, 153
BstKTI GATC 7 cut(s) 136, 142, 292, 339, 343, 382, 855
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
BstMCI CGRYCG 2 cut(s) 142, 610
BstMWI GCNNNNNNNGC 9 cut(s) 125, 191, 252, 329, 755, 758, 837, 846, 855
BstNI CCWGG 2 cut(s) 260, 518
BstSCI CCNGG 2 cut(s) 258, 516
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 452, 736, 745
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 4 cut(s) 93, 119, 670, 797
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 786
BtsCI GGATG 4 cut(s) 30, 255, 300, 554
BtsIMutI CAGTG 1 cut(s) 590
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 202, 330
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 62, 153
Cfr10I RCCGGY 2 cut(s) 179, 200
Cfr13I GGNCC 2 cut(s) 91, 92
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 31, 263
CviAII CATG 1 cut(s) 742
CviQI GTAC 2 cut(s) 31, 263
DdeI CTNAG 3 cut(s) 333, 345, 654
DpnI GATC 7 cut(s) 135, 141, 291, 338, 342, 381, 854
DpnII GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 117, 795
Eam1104I CTCTTC 2 cut(s) 213, 453
EarI CTCTTC 2 cut(s) 213, 453
EciI GGCGGA 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 95, 500
Eco57I CTGAAG 3 cut(s) 582, 618, 666
EcoO109I RGGNCCY 2 cut(s) 91, 92
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 258, 516
EcoT38I GRGCYC 2 cut(s) 95, 500
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 1 cut(s) 745
FaiI YATR 4 cut(s) 420, 438, 579, 743
FaqI GGGAC 2 cut(s) 208, 531
FatI CATG 1 cut(s) 741
FauI CCCGC 2 cut(s) 14, 199
Fnu4HI GCNGC 6 cut(s) 120, 195, 198, 441, 750, 759
FokI GGATG 4 cut(s) 37, 242, 287, 541
FriOI GRGCYC 2 cut(s) 95, 500
Fsp4HI GCNGC 6 cut(s) 120, 195, 198, 441, 750, 759
FspBI CTAG 1 cut(s) 266
GlaI GCGC 2 cut(s) 61, 152
GluI GCNGC 6 cut(s) 120, 195, 198, 441, 750, 759
GsaI CCCAGC 1 cut(s) 785
GsuI CTGGAG 2 cut(s) 300, 371
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 4 cut(s) 93, 119, 670, 797
HapII CCGG 3 cut(s) 180, 201, 804
HgaI GACGC 1 cut(s) 61
HhaI GCGC 2 cut(s) 62, 153
Hin1II CATG 1 cut(s) 745
Hin6I GCGC 2 cut(s) 60, 151
HinP1I GCGC 2 cut(s) 60, 151
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 5 cut(s) 47, 221, 311, 652, 773
HpaII CCGG 3 cut(s) 180, 201, 804
HphI GGTGA 2 cut(s) 532, 585
Hpy166II GTNNAC 2 cut(s) 76, 175
Hpy188I TCNGA 8 cut(s) 106, 133, 217, 336, 562, 657, 685, 724
Hpy188III TCNNGA 3 cut(s) 137, 344, 397
Hpy8I GTNNAC 2 cut(s) 76, 175
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 690, 739
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 9 cut(s) 43, 67, 88, 163, 295, 323, 440, 627, 752
HpyF10VI GCNNNNNNNGC 9 cut(s) 125, 191, 252, 329, 755, 758, 837, 846, 855
HpyF3I CTNAG 3 cut(s) 333, 345, 654
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 745
HspAI GCGC 2 cut(s) 60, 151
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
LmnI GCTCC 4 cut(s) 148, 190, 507, 646
Lsp1109I GCAGC 3 cut(s) 452, 736, 745
LweI GCATC 4 cut(s) 15, 150, 264, 592
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 231
MalI GATC 7 cut(s) 135, 141, 291, 338, 342, 381, 854
MboI GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
MboII GAAGA 6 cut(s) 91, 230, 440, 611, 743, 768
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 3 cut(s) 95, 187, 500
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 5 cut(s) 107, 421, 664, 689, 870
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 3 cut(s) 56, 230, 646
MmeI TCCRAC 1 cut(s) 485
Mox20I TGGCCA 1 cut(s) 797
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 797
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 797
MspI CCGG 3 cut(s) 180, 201, 804
MspR9I CCNGG 2 cut(s) 260, 518
MvaI CCWGG 2 cut(s) 260, 518
MwoI GCNNNNNNNGC 9 cut(s) 125, 191, 252, 329, 755, 758, 837, 846, 855
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 745
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 652
OliI CACNNNNGTG 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 311, 773
PkrI GCNGC 6 cut(s) 121, 196, 199, 442, 751, 760
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 3 cut(s) 55, 229, 646
PpsI GAGTC 3 cut(s) 55, 229, 646
Psp6I CCWGG 2 cut(s) 258, 516
PspFI CCCAGC 1 cut(s) 781
PspGI CCWGG 2 cut(s) 258, 516
PspN4I GGNNCC 1 cut(s) 93
PspOMI GGGCCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 91, 92
PstI CTGCAG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 289
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 32, 264
RsaNI GTAC 2 cut(s) 31, 263
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 6 cut(s) 120, 195, 198, 441, 750, 759
Sau3AI GATC 7 cut(s) 133, 139, 289, 336, 340, 379, 852
Sau96I GGNCC 2 cut(s) 91, 92
SchI GAGTC 3 cut(s) 56, 230, 646
ScrFI CCNGG 2 cut(s) 260, 518
SduI GDGCHC 3 cut(s) 95, 187, 500
SfaNI GCATC 4 cut(s) 15, 150, 264, 592
SfcI CTRYAG 1 cut(s) 293
SgrAI CRCCGGYG 2 cut(s) 179, 200
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 5 cut(s) 107, 421, 664, 689, 870
SsiI CCGC 7 cut(s) 21, 120, 192, 195, 198, 474, 710
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 258, 516
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 1 cut(s) 234
TaqI TCGA 8 cut(s) 11, 50, 111, 138, 142, 240, 339, 426
TaqII GACCGA 2 cut(s) 624, 839
TasI AATT 5 cut(s) 107, 421, 664, 689, 870
TauI GCSGC 3 cut(s) 122, 197, 200
TfiI GAWTC 2 cut(s) 311, 773
TscAI CASTG 1 cut(s) 590
TseI GCWGC 3 cut(s) 440, 749, 758
TspDTI ATGAA 2 cut(s) 440, 758
TspRI CASTG 1 cut(s) 590
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.