Rmu_sc0006492.1_g000007

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006492.1
OG0016089
Physical Location & Seq
Forward (+)
29271 .. 32206
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006492.1_g000007.1.cds

Sequence Viewer

Length: 1059 bp
atggaagggtcgagcaacggagggatgctgtaccacgaggtgcaggagtcgaagctgtgcgccgtgcattgcgtcaacacggcgctgcagggtcccttcttctccgaattcgatttggccgccctcgcctccgatctcgatcgcaaggagcgccagatgatgcagctcaacctccaacccggagccgccgccgccgccggcgatttcctctccgaggagtcccacaacgtctccctcgacggcgatttcagtatccaggtacttcaaaaggctttagaggtttgggatctgcaggtcatcccccttgattctccagttgcagagccagctcagatcgatcctgagctggaaaatggttttatctgtcatttacatgatcattggttctgtatcaggaaagtgaatggggagtggtataattttgacagtctgtatgcagccccacttcacctttcaaagttttacctctcggcctatttggacacgctaaagggctctggttggagcattttcctggtgagaggaaacttcccaaaagagtgtcccatctcatcctcagaagcttccaacgggtatgggcagtggctttcacctgaagatgccgaccgaataactaaatcctgcaactccacaaatgctccacgccagactcagagaacaaatcctcgacaaccttcagaccaattcctatctaccgaggaagcagagctgctatcagagatggaagacgaggacatgaaggctgcaatagctgccagtcttatggattcttccccacccgtggtcaatgccggagctagcaacgtggccaatgctggagatagcaacgtggtcaatgccggagctagcaacgtggccaatgccggagctagcaacgtgatcaatgccggagatagcaacgtggtcaatgtcggagctagcaatgtggccaatgctggagatagcaacgtggtcaatgctggagctagcaatgtggccattgctggagctagcaacccgcagaatgaaagctcaaacagccaagagaacaagatcagccaagagaataaaattgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

352

Amino Acids

37.53

Weight (kDa)

4.4

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54130
fragaria_vesca FvH4_6g12170
malus_domestica MD04G1146200.v1.1 MD12G1159400.v1.1
prunus_persica Prupe.6G269800_v2.0.a1
pyrus_communis pycom04g13180
rosa_chinensis RchiOBHm_Chr3g0463971
rosa_laevigata RLG00000024731
rosa_multiflora Rmu_sc0006492.1_g000007
rosa_roxburghii Rroxscaffold_6G00416100
rosa_rugosa Rorug03G0069700
rosa_samantha Rh3AG126600 Rh3BG130800 Rh3DG132000
rosa_wichuraiana Rw3G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AciI CCGC 6 cut(s) 120, 186, 189, 192, 195, 998
AclWI GGATC 2 cut(s) 294, 332
AcoI YGGCCR 5 cut(s) 117, 807, 855, 927, 975
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 615, 660
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 32, 261
AfiI CCNNNNNNNGG 2 cut(s) 214, 781
AgsI TTSAA 2 cut(s) 266, 456
AjnI CCWGG 2 cut(s) 255, 513
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 294, 332
AoxI GGCC 6 cut(s) 117, 471, 807, 855, 927, 975
ApeKI GCWGC 6 cut(s) 85, 163, 437, 709, 743, 752
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 3 cut(s) 62, 85, 153
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 440, 529, 582
AsuNHI GCTAGC 6 cut(s) 797, 845, 869, 917, 965, 989
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 4 cut(s) 809, 857, 929, 977
BanII GRGCYC 1 cut(s) 497
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 732
BbvI GCAGC 6 cut(s) 72, 175, 449, 696, 730, 739
BccI CCATC 2 cut(s) 554, 715
BceAI ACGGC 3 cut(s) 47, 96, 256
BciT130I CCWGG 2 cut(s) 257, 515
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 2 cut(s) 376, 879
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 6 cut(s) 798, 846, 870, 918, 966, 990
BfmI CTRYAG 2 cut(s) 86, 290
BfoI RGCGCY 2 cut(s) 86, 154
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 263
Bme1390I CCNGG 3 cut(s) 180, 257, 515
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 94, 184
BmrFI CCNGG 3 cut(s) 180, 257, 515
BmsI GCATC 3 cut(s) 15, 150, 589
BmtI GCTAGC 6 cut(s) 801, 849, 873, 921, 969, 993
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 5 cut(s) 297, 837, 957, 981, 1005
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 213, 696, 780
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 781
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 314, 756
Bse3DI GCAATG 4 cut(s) 67, 928, 976, 978
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 257, 515
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 213, 696, 780
BseGI GGATG 3 cut(s) 30, 297, 551
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 214, 781
BseMI GCAATG 4 cut(s) 67, 928, 976, 978
BseMII CTCAG 4 cut(s) 333, 344, 570, 665
BseNI ACTGG 2 cut(s) 314, 756
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 6 cut(s) 72, 175, 449, 696, 730, 739
BsgI GTGCAG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 142, 607
BshFI GGCC 6 cut(s) 119, 473, 809, 857, 929, 977
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 142, 607
BsiSI CCGG 6 cut(s) 180, 198, 792, 840, 864, 888
BslFI GGGAC 3 cut(s) 78, 205, 528
BslI CCNNNNNNNGG 2 cut(s) 214, 781
BsmAI GTCTC 1 cut(s) 235
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 3 cut(s) 78, 205, 528
BsnI GGCC 6 cut(s) 119, 473, 809, 857, 929, 977
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
BspACI CCGC 6 cut(s) 120, 186, 189, 192, 195, 998
BspANI GGCC 6 cut(s) 119, 473, 809, 857, 929, 977
BspCNI CTCAG 4 cut(s) 334, 343, 569, 664
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 93, 94, 184
BspMAI CTGCAG 2 cut(s) 90, 294
BspMI ACCTGC 1 cut(s) 283
BspOI GCTAGC 6 cut(s) 801, 849, 873, 921, 969, 993
BspPI GGATC 2 cut(s) 294, 332
BsrDI GCAATG 4 cut(s) 67, 928, 976, 978
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 314, 756
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 213, 696, 780
BssMI GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 257, 515
Bst4CI ACNGT 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 752
BstC8I GCNNGC 8 cut(s) 199, 327, 799, 847, 871, 919, 967, 991
BstDEI CTNAG 4 cut(s) 330, 342, 556, 651
BstDSI CCRYGG 1 cut(s) 780
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 3 cut(s) 30, 297, 551
BstH2I RGCGCY 2 cut(s) 86, 154
BstHHI GCGC 3 cut(s) 62, 85, 153
BstKTI GATC 8 cut(s) 136, 142, 289, 336, 340, 379, 882, 1035
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
BstMCI CGRYCG 2 cut(s) 142, 607
BstMWI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 194, 326, 749, 752, 1017
BstNI CCWGG 2 cut(s) 257, 515
BstSCI CCNGG 3 cut(s) 178, 255, 513
BstSFI CTRYAG 2 cut(s) 86, 290
BstV1I GCAGC 6 cut(s) 72, 175, 449, 696, 730, 739
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 336
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 6 cut(s) 119, 473, 809, 857, 929, 977
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 30, 297, 551
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 1 cut(s) 587
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 8 cut(s) 199, 327, 799, 847, 871, 919, 967, 991
CfoI GCGC 3 cut(s) 62, 85, 153
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 31, 260
CviAII CATG 2 cut(s) 374, 736
CviQI GTAC 2 cut(s) 31, 260
DdeI CTNAG 4 cut(s) 330, 342, 556, 651
DpnI GATC 8 cut(s) 135, 141, 288, 335, 339, 378, 881, 1034
DpnII GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 5 cut(s) 117, 807, 855, 927, 975
Eco24I GRGCYC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 615, 660
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 255, 513
EcoT38I GRGCYC 1 cut(s) 497
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 377, 739
FaiI YATR 6 cut(s) 375, 417, 435, 576, 737, 764
FaqI GGGAC 3 cut(s) 78, 205, 528
FatI CATG 2 cut(s) 373, 735
FauI CCCGC 1 cut(s) 1005
FbaI TGATCA 2 cut(s) 376, 879
FokI GGATG 3 cut(s) 37, 284, 538
FriOI GRGCYC 1 cut(s) 497
FspBI CTAG 6 cut(s) 798, 846, 870, 918, 966, 990
GlaI GCGC 3 cut(s) 61, 84, 152
GsuI CTGGAG 5 cut(s) 297, 837, 957, 981, 1005
HaeII RGCGCY 2 cut(s) 86, 154
HaeIII GGCC 6 cut(s) 119, 473, 809, 857, 929, 977
HapII CCGG 6 cut(s) 180, 198, 792, 840, 864, 888
HgaI GACGC 1 cut(s) 61
HhaI GCGC 3 cut(s) 62, 85, 153
Hin1II CATG 2 cut(s) 377, 739
Hin6I GCGC 3 cut(s) 60, 83, 151
HinP1I GCGC 3 cut(s) 60, 83, 151
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 5 cut(s) 47, 218, 308, 649, 767
HpaII CCGG 6 cut(s) 180, 198, 792, 840, 864, 888
HphI GGTGA 3 cut(s) 440, 529, 582
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 9 cut(s) 106, 133, 214, 333, 559, 654, 679, 718, 914
Hpy188III TCNNGA 3 cut(s) 137, 341, 394
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 106, 684, 733
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 7 cut(s) 228, 804, 828, 852, 876, 900, 948
HpyCH4V TGCA 9 cut(s) 43, 67, 88, 163, 292, 320, 437, 624, 746
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 194, 326, 749, 752, 1017
HpyF3I CTNAG 4 cut(s) 330, 342, 556, 651
HpySE526I ACGT 7 cut(s) 228, 804, 828, 852, 876, 900, 948
Hsp92II CATG 2 cut(s) 377, 739
HspAI GCGC 3 cut(s) 60, 83, 151
KflI GGGWCCC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 376, 879
Kzo9I GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
Lsp1109I GCAGC 6 cut(s) 72, 175, 449, 696, 730, 739
LweI GCATC 3 cut(s) 15, 150, 589
MaeI CTAG 6 cut(s) 798, 846, 870, 918, 966, 990
MaeII ACGT 7 cut(s) 228, 804, 828, 852, 876, 900, 948
MalI GATC 8 cut(s) 135, 141, 288, 335, 339, 378, 881, 1034
MboI GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
MboII GAAGA 4 cut(s) 91, 608, 737, 762
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 4 cut(s) 809, 857, 929, 977
MluCI AATT 4 cut(s) 107, 418, 683, 1050
MluNI TGGCCA 4 cut(s) 809, 857, 929, 977
MlyI GAGTC 3 cut(s) 56, 227, 643
MmeI TCCRAC 4 cut(s) 199, 482, 591, 892
Mox20I TGGCCA 4 cut(s) 809, 857, 929, 977
MreI CGCCGGCG 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 197
MscI TGGCCA 4 cut(s) 809, 857, 929, 977
MslI CAYNNNNRTG 1 cut(s) 372
Msp20I TGGCCA 4 cut(s) 809, 857, 929, 977
MspI CCGG 6 cut(s) 180, 198, 792, 840, 864, 888
MspR9I CCNGG 3 cut(s) 180, 257, 515
MvaI CCWGG 2 cut(s) 257, 515
MwoI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 194, 326, 749, 752, 1017
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 180
NdeII GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
NgoMIV GCCGGC 1 cut(s) 197
NheI GCTAGC 6 cut(s) 797, 845, 869, 917, 965, 989
NlaIII CATG 2 cut(s) 377, 739
NlaIV GGNNCC 3 cut(s) 93, 94, 184
NmeAIII GCCGAG 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 308, 767
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 3 cut(s) 55, 226, 643
PpsI GAGTC 3 cut(s) 55, 226, 643
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 255, 513
PspGI CCWGG 2 cut(s) 255, 513
PspN4I GGNNCC 3 cut(s) 93, 94, 184
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 2 cut(s) 90, 294
PsuI RGATCY 1 cut(s) 286
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 32, 261
RsaNI GTAC 2 cut(s) 31, 260
RseI CAYNNNNRTG 1 cut(s) 372
Sau3AI GATC 8 cut(s) 133, 139, 286, 333, 337, 376, 879, 1032
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 3 cut(s) 56, 227, 643
ScrFI CCNGG 3 cut(s) 180, 257, 515
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 3 cut(s) 15, 150, 589
SfcI CTRYAG 2 cut(s) 86, 290
SgrAI CRCCGGYG 1 cut(s) 197
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 4 cut(s) 107, 418, 683, 1050
SsiI CCGC 6 cut(s) 120, 186, 189, 192, 195, 998
SspMI CTAG 6 cut(s) 798, 846, 870, 918, 966, 990
StyD4I CCNGG 3 cut(s) 178, 255, 513
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 7 cut(s) 231, 807, 831, 855, 879, 903, 951
TaqI TCGA 7 cut(s) 11, 50, 111, 138, 237, 336, 667
TaqII GACCGA 1 cut(s) 621
TasI AATT 4 cut(s) 107, 418, 683, 1050
TauI GCSGC 5 cut(s) 122, 188, 191, 194, 197
TfiI GAWTC 2 cut(s) 308, 767
TscAI CASTG 1 cut(s) 587
TseI GCWGC 6 cut(s) 85, 163, 437, 709, 743, 752
TspDTI ATGAA 2 cut(s) 752, 1020
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 107
XspI CTAG 6 cut(s) 798, 846, 870, 918, 966, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.