Rw3G010690

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016089
Physical Location & Seq
Forward (+)
10330565 .. 10333410
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010690.1

Sequence Viewer

Length: 1122 bp
ATGGAAGGGTCGAGCAACGGAGGGATGCTGTACCACGAGGTGCAGGAGTCGAAGCTGTGCGCCGTGCATTGCGTCAACACGGCGCTGCAGGGTCCCTTCTTCTCCGAATTCGATTTGGCCGCCCTCGCCTCCGATCTCGATCGCAAGGAGCGCCAGATGATGCAGCTCAACCTCCAACCCGGAGCCAACGCCAACTCCGCCGCCGCCGGCGATTTCCTCTCTGAGGAGTCCCACAACGTCTCCCTCGACGGCGATTTCAGTATCCAGGTACTTCAAAAGGCTTTAGAGGTTTGGGATCTGCAGGTCATCCCCCTTGATTCTCCAGTTGCAGAGCCAGCTCAGATCGATCCTGAGCTGGAAAATGGGTTTATCTGTCATTTACATGATCATTGGTTCTGTATCAGGAAAGTGAATGGGGAGTGGTATAATTTTGACAGTCTGTATGCAGCTCCACTTCACCTTTCAAAGTTTTACCTCTCGGCCTATTTGGACACGCTAAAGGGCTCTGGTTGGAGCATTTTCCTGGTGAGAGGAAACTTCCCAAAAGAGTGTCCCATCTCATCCTCAGAAGCTTCCAACGGGTATGGGCAGTGGCTTTCACCTGAAGATGCCGACCGAATAACTAAATCCTGCAACTCCACAAATGCTTCACGCCAGACTCAGAGAACAATTCCTCGACAACCTTCAGACCAATTCCTATCTACCGAGGAAGTAGAGCTGCTATCAGAGATGGAAGACGAGGACATGAAGGCTGCAATAGCTGCCAGTCTTATGGATTCTTCCCCACCCGTGGTCAATGCCGGAGATAGCAACGTGGTCAATGCCGGAGCTAGCAACGTGGCCAATGCCGGAGATAGCAACGTGGTCAATGCCGGAGATAGCAACGTGGTCAATGCCGGAGCTAGCAACGTGGTCAATGCCGGAGCTAGCAACGTGGCCAATGCCGGAGATAGCAACGTGGCCAATGCCGGAGCTAGCAACGTGGTCAATGCCGGAGCTAGCAACGTGGTCAATGCCGGAGCTAGCAATGTGGCCAATGCTGGAGCTAGCAACGTGGCCATTGCTGGAGCTAGCAACCCGCAGAATGAAAGCTCAAACAGCCAAGAGAATAAAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

373

Amino Acids

39.27

Weight (kDa)

4.36

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 15 - 177 9.9e-54 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54130
fragaria_vesca FvH4_6g12170
malus_domestica MD04G1146200.v1.1 MD12G1159400.v1.1
prunus_persica Prupe.6G269800_v2.0.a1
pyrus_communis pycom04g13180
rosa_chinensis RchiOBHm_Chr3g0463971
rosa_laevigata RLG00000024731
rosa_multiflora Rmu_sc0006492.1_g000007
rosa_roxburghii Rroxscaffold_6G00416100
rosa_rugosa Rorug03G0069700
rosa_samantha Rh3AG126600 Rh3BG130800 Rh3DG132000
rosa_wichuraiana Rw3G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AciI CCGC 5 cut(s) 120, 198, 201, 204, 1079
AclWI GGATC 2 cut(s) 303, 341
AcoI YGGCCR 6 cut(s) 117, 840, 936, 960, 1032, 1056
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 624, 669
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 32, 270
AfiI CCNNNNNNNGG 2 cut(s) 223, 790
AgsI TTSAA 2 cut(s) 275, 465
AjnI CCWGG 2 cut(s) 264, 522
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 303, 341
AoxI GGCC 7 cut(s) 117, 480, 840, 936, 960, 1032, 1056
ApeKI GCWGC 6 cut(s) 85, 163, 446, 718, 752, 761
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 3 cut(s) 62, 85, 153
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 449, 538, 591
AsuNHI GCTAGC 8 cut(s) 830, 902, 926, 974, 998, 1022, 1046, 1070
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
BanII GRGCYC 1 cut(s) 506
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 741
BbvI GCAGC 6 cut(s) 72, 175, 458, 705, 739, 748
BccI CCATC 2 cut(s) 563, 724
BceAI ACGGC 3 cut(s) 47, 96, 265
BciT130I CCWGG 2 cut(s) 266, 524
BciVI GTATCC 1 cut(s) 272
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 8 cut(s) 831, 903, 927, 975, 999, 1023, 1047, 1071
BfmI CTRYAG 2 cut(s) 86, 299
BfoI RGCGCY 2 cut(s) 86, 154
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 272
BisI GCNGC 9 cut(s) 86, 120, 164, 201, 204, 447, 719, 753, 762
BlsI GCNGC 9 cut(s) 87, 121, 165, 202, 205, 448, 720, 754, 763
Bme1390I CCNGG 3 cut(s) 180, 266, 524
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 94, 184
BmrFI CCNGG 3 cut(s) 180, 266, 524
BmsI GCATC 3 cut(s) 15, 150, 598
BmtI GCTAGC 8 cut(s) 834, 906, 930, 978, 1002, 1026, 1050, 1074
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 3 cut(s) 306, 1062, 1086
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 705, 789
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 790
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 323, 765
Bse3DI GCAATG 3 cut(s) 67, 1033, 1059
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 266, 524
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 705, 789
BseGI GGATG 3 cut(s) 30, 306, 560
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 223, 790
BseMI GCAATG 3 cut(s) 67, 1033, 1059
BseMII CTCAG 5 cut(s) 213, 342, 353, 579, 674
BseNI ACTGG 2 cut(s) 323, 765
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 6 cut(s) 72, 175, 458, 705, 739, 748
BsgI GTGCAG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 142, 616
BshFI GGCC 7 cut(s) 119, 482, 842, 938, 962, 1034, 1058
BshVI ATCGAT 1 cut(s) 345
BsiEI CGRYCG 2 cut(s) 142, 616
BslFI GGGAC 3 cut(s) 78, 214, 537
BslI CCNNNNNNNGG 2 cut(s) 223, 790
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 3 cut(s) 78, 214, 537
BsnI GGCC 7 cut(s) 119, 482, 842, 938, 962, 1034, 1058
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 6 cut(s) 133, 139, 295, 342, 346, 385
BspACI CCGC 5 cut(s) 120, 198, 201, 204, 1079
BspANI GGCC 7 cut(s) 119, 482, 842, 938, 962, 1034, 1058
BspCNI CTCAG 5 cut(s) 214, 343, 352, 578, 673
BspDI ATCGAT 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 93, 94, 184
BspMAI CTGCAG 2 cut(s) 90, 303
BspMI ACCTGC 1 cut(s) 292
BspOI GCTAGC 8 cut(s) 834, 906, 930, 978, 1002, 1026, 1050, 1074
BspPI GGATC 2 cut(s) 303, 341
BsrDI GCAATG 3 cut(s) 67, 1033, 1059
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 323, 765
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 705, 789
BssMI GATC 6 cut(s) 133, 139, 295, 342, 346, 385
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 266, 524
Bst4CI ACNGT 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 761
BstDEI CTNAG 5 cut(s) 222, 339, 351, 565, 660
BstDSI CCRYGG 1 cut(s) 789
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 30, 306, 560
BstH2I RGCGCY 2 cut(s) 86, 154
BstHHI GCGC 3 cut(s) 62, 85, 153
BstKTI GATC 6 cut(s) 136, 142, 298, 345, 349, 388
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 6 cut(s) 133, 139, 295, 342, 346, 385
BstMCI CGRYCG 2 cut(s) 142, 616
BstMWI GCNNNNNNNGC 7 cut(s) 125, 150, 197, 335, 758, 761, 1098
BstNI CCWGG 2 cut(s) 266, 524
BstSCI CCNGG 3 cut(s) 178, 264, 522
BstSFI CTRYAG 2 cut(s) 86, 299
BstV1I GCAGC 6 cut(s) 72, 175, 458, 705, 739, 748
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 772
BstYI RGATCY 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 345
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 7 cut(s) 119, 482, 842, 938, 962, 1034, 1058
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 789
BtsCI GGATG 3 cut(s) 30, 306, 560
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 596
BveI ACCTGC 1 cut(s) 292
CfoI GCGC 3 cut(s) 62, 85, 153
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 31, 269
CviAII CATG 2 cut(s) 383, 745
CviQI GTAC 2 cut(s) 31, 269
DdeI CTNAG 5 cut(s) 222, 339, 351, 565, 660
DpnI GATC 6 cut(s) 135, 141, 297, 344, 348, 387
DpnII GATC 6 cut(s) 133, 139, 295, 342, 346, 385
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 6 cut(s) 117, 840, 936, 960, 1032, 1056
EciI GGCGGA 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 624, 669
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 264, 522
EcoT38I GRGCYC 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 2 cut(s) 386, 748
FaiI YATR 6 cut(s) 384, 426, 444, 585, 746, 773
FaqI GGGAC 3 cut(s) 78, 214, 537
FatI CATG 2 cut(s) 382, 744
FauI CCCGC 1 cut(s) 1086
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 9 cut(s) 86, 120, 164, 201, 204, 447, 719, 753, 762
FokI GGATG 3 cut(s) 37, 293, 547
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 9 cut(s) 86, 120, 164, 201, 204, 447, 719, 753, 762
FspBI CTAG 8 cut(s) 831, 903, 927, 975, 999, 1023, 1047, 1071
GlaI GCGC 3 cut(s) 61, 84, 152
GluI GCNGC 9 cut(s) 86, 120, 164, 201, 204, 447, 719, 753, 762
GsuI CTGGAG 3 cut(s) 306, 1062, 1086
HaeII RGCGCY 2 cut(s) 86, 154
HaeIII GGCC 7 cut(s) 119, 482, 842, 938, 962, 1034, 1058
HgaI GACGC 1 cut(s) 61
HhaI GCGC 3 cut(s) 62, 85, 153
Hin1II CATG 2 cut(s) 386, 748
Hin6I GCGC 3 cut(s) 60, 83, 151
HinP1I GCGC 3 cut(s) 60, 83, 151
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 5 cut(s) 47, 227, 317, 658, 776
HphI GGTGA 3 cut(s) 449, 538, 591
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 8 cut(s) 106, 133, 223, 342, 568, 663, 688, 727
Hpy188III TCNNGA 3 cut(s) 137, 350, 403
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 106, 693, 742
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 9 cut(s) 43, 67, 88, 163, 301, 329, 446, 633, 755
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 150, 197, 335, 758, 761, 1098
HpyF3I CTNAG 5 cut(s) 222, 339, 351, 565, 660
Hsp92II CATG 2 cut(s) 386, 748
HspAI GCGC 3 cut(s) 60, 83, 151
KflI GGGWCCC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 133, 139, 295, 342, 346, 385
Lsp1109I GCAGC 6 cut(s) 72, 175, 458, 705, 739, 748
LweI GCATC 3 cut(s) 15, 150, 598
MaeI CTAG 8 cut(s) 831, 903, 927, 975, 999, 1023, 1047, 1071
MalI GATC 6 cut(s) 135, 141, 297, 344, 348, 387
MboI GATC 6 cut(s) 133, 139, 295, 342, 346, 385
MboII GAAGA 4 cut(s) 91, 617, 746, 771
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
MluCI AATT 5 cut(s) 107, 427, 669, 692, 1113
MluNI TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
MlyI GAGTC 3 cut(s) 56, 236, 652
MmeI TCCRAC 3 cut(s) 199, 491, 600
Mox20I TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
MreI CGCCGGCG 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 206
MscI TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 5 cut(s) 842, 938, 962, 1034, 1058
MspR9I CCNGG 3 cut(s) 180, 266, 524
MvaI CCWGG 2 cut(s) 266, 524
MwoI GCNNNNNNNGC 7 cut(s) 125, 150, 197, 335, 758, 761, 1098
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 180
NdeII GATC 6 cut(s) 133, 139, 295, 342, 346, 385
NgoMIV GCCGGC 1 cut(s) 206
NheI GCTAGC 8 cut(s) 830, 902, 926, 974, 998, 1022, 1046, 1070
NlaIII CATG 2 cut(s) 386, 748
NlaIV GGNNCC 3 cut(s) 93, 94, 184
NmeAIII GCCGAG 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 317, 776
PkrI GCNGC 9 cut(s) 87, 121, 165, 202, 205, 448, 720, 754, 763
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 3 cut(s) 55, 235, 652
PpsI GAGTC 3 cut(s) 55, 235, 652
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 264, 522
PspGI CCWGG 2 cut(s) 264, 522
PspN4I GGNNCC 3 cut(s) 93, 94, 184
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 2 cut(s) 90, 303
PsuI RGATCY 1 cut(s) 295
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 32, 270
RsaNI GTAC 2 cut(s) 31, 269
RseI CAYNNNNRTG 1 cut(s) 381
SatI GCNGC 9 cut(s) 86, 120, 164, 201, 204, 447, 719, 753, 762
Sau3AI GATC 6 cut(s) 133, 139, 295, 342, 346, 385
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 3 cut(s) 56, 236, 652
ScrFI CCNGG 3 cut(s) 180, 266, 524
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 3 cut(s) 15, 150, 598
SfcI CTRYAG 2 cut(s) 86, 299
SgrAI CRCCGGYG 1 cut(s) 206
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 5 cut(s) 107, 427, 669, 692, 1113
SsiI CCGC 5 cut(s) 120, 198, 201, 204, 1079
SspMI CTAG 8 cut(s) 831, 903, 927, 975, 999, 1023, 1047, 1071
StyD4I CCNGG 3 cut(s) 178, 264, 522
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 7 cut(s) 11, 50, 111, 138, 246, 345, 676
TaqII GACCGA 1 cut(s) 630
TasI AATT 5 cut(s) 107, 427, 669, 692, 1113
TauI GCSGC 3 cut(s) 122, 203, 206
TfiI GAWTC 2 cut(s) 317, 776
TscAI CASTG 1 cut(s) 596
TseI GCWGC 6 cut(s) 85, 163, 446, 718, 752, 761
TspDTI ATGAA 2 cut(s) 761, 1101
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 107
XspI CTAG 8 cut(s) 831, 903, 927, 975, 999, 1023, 1047, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.