Prupe.6G269800_v2.0.a1

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016089
Physical Location & Seq
Reverse (-)
25639363 .. 25643024
3662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G269800.1

Sequence Viewer

Length: 1014 bp
ATGGAAGGAGCGAGCAATGGAGGGATGTTGTACCACGAGGTACAAGAGTCGAAGCTGTGCGCGGTGCATTGCGTGAACACGGTGTTGCAGGGGCCTTTCTTCTCCGAATTCGATTTGGCGGCACTCGCCTCCGATCTCGATCGCAAGGAGCGGCAGATGATGCTCGTCGAGGGCGGGTCCCACGCCGGCGATTTCCTCTCCGAGGAGTCTCACAACGTCTCCTTGGACGGCGATTTCAGCATTCAGGTTCTACAAAAGGCTTTAGAGGTTTGGGATCTGCAGGTCATCCCCCTTGATTCTCCAGTTGCAGAGCCTGCCCAGATTGATCCTGAGCTTGAAAATGCATTCATCTGTCATTTGCAGGATCATTGGTTCTGTATCAGAAAAGTGAGTGGAGAGTGGTATAATTTTGACAGTCTGTATGCAGCCCCACTGCACCTCTCAAAGTTTTACCTTTCAGCCTATTTGGACACACTAAAAGGCTCTGGTTGGAGCATTTTCCTGGTGAGAGGAAACTTCCCGAAAGAGTGTCCCATGTCATCCTCTGAAGCTTCTAATGGCTATGGGCAGTGGCTTTCACCTGAAGATGCTGAGAGGATAACTAAATCCTGCAACTCCACAAATGCTCAACCTCAGGGAACAAATTGGAATCAACAATCTTCGGCTCCATTTCTATCAACAGAAGAAGCAGAATTGCTTTCAGAAATGGAAGACGAGGACTTAAAGGCTGCCATTGCTGCCAGTCTTATGGATTCTTCCCCAGCCCCAGCCCCAGCGCCATCCCCAGCCCCGGCCCAAGCCCCATCCCCGGCCCCGGCCCAAGCCCCATCCCCATCCCCATCCCCATCCCCGTCTCCAGCCCCAGTGCCATCCCCGGGCCTAGCCCCGTCTCCAGCCCCAGTGCCATCCCCGGGCCTAGCCCCGGCCCCGGCCGTAGCTTCCCCAGCCATAGCCCATGCTGAAGCTGGCAACCTGCAGAATGAAACCTCAAACAGCGAAAAGAAAAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

338

Amino Acids

35.84

Weight (kDa)

4.43

Isoelectric Point (pI)

78.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54130
fragaria_vesca FvH4_6g12170
malus_domestica MD04G1146200.v1.1 MD12G1159400.v1.1
prunus_persica Prupe.6G269800_v2.0.a1
pyrus_communis pycom04g13180
rosa_chinensis RchiOBHm_Chr3g0463971
rosa_laevigata RLG00000024731
rosa_multiflora Rmu_sc0006492.1_g000007
rosa_roxburghii Rroxscaffold_6G00416100
rosa_rugosa Rorug03G0069700
rosa_samantha Rh3AG126600 Rh3BG130800 Rh3DG132000
rosa_wichuraiana Rw3G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 271, 981
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 62, 119, 151, 174
AclWI GGATC 3 cut(s) 282, 320, 372
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 3 cut(s) 567, 603, 981
AfaI GTAC 2 cut(s) 32, 42
AfiI CCNNNNNNNGG 8 cut(s) 202, 790, 808, 814, 875, 911, 922, 928
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 501
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 55, 334, 551, 938, 965
AluI AGCT 5 cut(s) 55, 334, 551, 938, 965
Alw26I GTCTC 4 cut(s) 213, 223, 858, 894
AlwI GGATC 3 cut(s) 282, 320, 372
AlwNI CAGNNNCTG 1 cut(s) 314
Ama87I CYCGRG 2 cut(s) 874, 910
AoxI GGCC 8 cut(s) 92, 792, 810, 816, 877, 913, 924, 930
ApeKI GCWGC 3 cut(s) 425, 728, 737
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 2 cut(s) 62, 778
AspS9I GGNCC 8 cut(s) 92, 177, 793, 811, 817, 877, 913, 925
AsuC2I CCSGG 9 cut(s) 791, 809, 815, 875, 876, 911, 912, 923, 929
AsuHPI GGTGA 2 cut(s) 517, 570
AvaI CYCGRG 2 cut(s) 874, 910
AvaII GGWCC 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 633
BaeI ACNNNNGTAYC 2 cut(s) 32, 65
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 437, 715, 724
BccI CCATC 8 cut(s) 787, 811, 835, 841, 847, 853, 877, 913
BceAI ACGGC 2 cut(s) 244, 917
BciT130I CCWGG 1 cut(s) 503
BcnI CCSGG 9 cut(s) 791, 809, 815, 875, 876, 911, 912, 923, 929
BcoDI GTCTC 4 cut(s) 213, 223, 858, 894
BfaI CTAG 2 cut(s) 881, 917
BfmI CTRYAG 2 cut(s) 278, 974
BfoI RGCGCY 1 cut(s) 779
BfuAI ACCTGC 2 cut(s) 271, 981
BisI GCNGC 5 cut(s) 120, 152, 426, 729, 738
BlsI GCNGC 5 cut(s) 121, 153, 427, 730, 739
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 2 cut(s) 874, 910
BmgT120I GGNCC 8 cut(s) 92, 177, 793, 811, 817, 877, 913, 925
BmiI GGNNCC 6 cut(s) 93, 178, 179, 666, 813, 927
BmrI ACTGGG 2 cut(s) 857, 893
BmsI GCATC 2 cut(s) 150, 577
BmuI ACTGGG 2 cut(s) 857, 893
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 3 cut(s) 285, 840, 876
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 9 cut(s) 791, 809, 815, 875, 876, 911, 912, 923, 929
BsaBI GATNNNNATC 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 8 cut(s) 202, 790, 808, 814, 875, 911, 922, 928
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 4 cut(s) 302, 741, 863, 899
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 3 cut(s) 22, 67, 732
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 503
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 8 cut(s) 202, 790, 808, 814, 875, 911, 922, 928
BseMI GCAATG 3 cut(s) 22, 67, 732
BseMII CTCAG 3 cut(s) 321, 582, 647
BseNI ACTGG 4 cut(s) 302, 741, 863, 899
BseRI GAGGAG 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 930
BseXI GCAGC 3 cut(s) 437, 715, 724
BseYI CCCAGC 5 cut(s) 760, 766, 772, 784, 943
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 142, 933
BshFI GGCC 8 cut(s) 94, 794, 812, 818, 879, 915, 926, 932
BsiEI CGRYCG 2 cut(s) 142, 933
BsiHKCI CYCGRG 2 cut(s) 874, 910
BsiSI CCGG 8 cut(s) 186, 791, 809, 815, 875, 911, 923, 929
BslFI GGGAC 2 cut(s) 163, 516
BslI CCNNNNNNNGG 8 cut(s) 202, 790, 808, 814, 875, 911, 922, 928
BsmAI GTCTC 4 cut(s) 213, 223, 858, 894
BsmBI CGTCTC 3 cut(s) 223, 858, 894
BsmFI GGGAC 2 cut(s) 163, 516
BsmI GAATGC 2 cut(s) 240, 344
BsnI GGCC 8 cut(s) 94, 794, 812, 818, 879, 915, 926, 932
BsoBI CYCGRG 2 cut(s) 874, 910
Bsp143I GATC 5 cut(s) 133, 139, 274, 325, 364
BspACI CCGC 4 cut(s) 62, 119, 151, 174
BspANI GGCC 8 cut(s) 94, 794, 812, 818, 879, 915, 926, 932
BspCNI CTCAG 3 cut(s) 322, 583, 646
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 6 cut(s) 93, 178, 179, 666, 813, 927
BspMAI CTGCAG 2 cut(s) 282, 978
BspMI ACCTGC 2 cut(s) 271, 981
BspPI GGATC 3 cut(s) 282, 320, 372
BsrBI CCGCTC 1 cut(s) 151
BsrDI GCAATG 3 cut(s) 22, 67, 732
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 4 cut(s) 302, 741, 863, 899
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 5 cut(s) 133, 139, 274, 325, 364
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 82, 416
BstAPI GCANNNNNTGC 2 cut(s) 160, 314
BstC8I GCNNGC 4 cut(s) 13, 187, 315, 967
BstDEI CTNAG 3 cut(s) 330, 591, 633
BstENI CCTNNNNNAGG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 2 cut(s) 62, 778
BstKTI GATC 5 cut(s) 136, 142, 277, 328, 367
BstMAI GTCTC 4 cut(s) 213, 223, 858, 894
BstMBI GATC 5 cut(s) 133, 139, 274, 325, 364
BstMCI CGRYCG 2 cut(s) 142, 933
BstMWI GCNNNNNNNGC 7 cut(s) 125, 160, 237, 314, 734, 737, 944
BstNI CCWGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 278, 974
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 437, 715, 724
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 1 cut(s) 274
BstZI CGGCCG 1 cut(s) 930
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 8 cut(s) 94, 794, 812, 818, 879, 915, 926, 932
BtsI GCAGTG 2 cut(s) 431, 575
BtsIMutI CAGTG 4 cut(s) 431, 575, 870, 906
BveI ACCTGC 2 cut(s) 271, 981
Cac8I GCNNGC 4 cut(s) 13, 187, 315, 967
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 2 cut(s) 62, 778
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 8 cut(s) 92, 177, 793, 811, 817, 877, 913, 925
Cfr9I CCCGGG 2 cut(s) 874, 910
Csp6I GTAC 2 cut(s) 31, 41
CviAII CATG 2 cut(s) 535, 956
CviQI GTAC 2 cut(s) 31, 41
DdeI CTNAG 3 cut(s) 330, 591, 633
DpnI GATC 5 cut(s) 135, 141, 276, 327, 366
DpnII GATC 5 cut(s) 133, 139, 274, 325, 364
EaeI YGGCCR 1 cut(s) 930
EagI CGGCCG 1 cut(s) 930
EclXI CGGCCG 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 177
Eco52I CGGCCG 1 cut(s) 930
Eco57I CTGAAG 3 cut(s) 567, 603, 981
Eco81I CCTNAGG 1 cut(s) 633
Eco88I CYCGRG 2 cut(s) 874, 910
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 92, 177
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 3 cut(s) 223, 858, 894
FaeI CATG 2 cut(s) 538, 959
FaiI YATR 7 cut(s) 405, 423, 536, 564, 749, 950, 957
FaqI GGGAC 2 cut(s) 163, 516
FatI CATG 2 cut(s) 534, 955
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 5 cut(s) 120, 152, 426, 729, 738
Fsp4HI GCNGC 5 cut(s) 120, 152, 426, 729, 738
FspBI CTAG 2 cut(s) 881, 917
GlaI GCGC 2 cut(s) 61, 777
GluI GCNGC 5 cut(s) 120, 152, 426, 729, 738
GsaI CCCAGC 5 cut(s) 764, 770, 776, 788, 947
GsuI CTGGAG 3 cut(s) 285, 840, 876
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 8 cut(s) 94, 794, 812, 818, 879, 915, 926, 932
HapII CCGG 8 cut(s) 186, 791, 809, 815, 875, 911, 923, 929
HhaI GCGC 2 cut(s) 62, 778
Hin1II CATG 2 cut(s) 538, 959
Hin6I GCGC 2 cut(s) 60, 776
HinP1I GCGC 2 cut(s) 60, 776
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 5 cut(s) 47, 206, 296, 649, 752
HpaII CCGG 8 cut(s) 186, 791, 809, 815, 875, 911, 923, 929
HphI GGTGA 2 cut(s) 517, 570
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 6 cut(s) 106, 133, 202, 383, 547, 703
Hpy188III TCNNGA 3 cut(s) 137, 329, 520
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 82, 416
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 160, 237, 314, 734, 737, 944
HpyF3I CTNAG 3 cut(s) 330, 591, 633
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 538, 959
HspAI GCGC 2 cut(s) 60, 776
KflI GGGWCCC 1 cut(s) 177
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 133, 139, 274, 325, 364
LmnI GCTCC 4 cut(s) 8, 148, 492, 670
Lsp1109I GCAGC 3 cut(s) 437, 715, 724
LweI GCATC 2 cut(s) 150, 577
MaeI CTAG 2 cut(s) 881, 917
MaeII ACGT 1 cut(s) 216
MalI GATC 5 cut(s) 135, 141, 276, 327, 366
MbiI CCGCTC 1 cut(s) 151
MboI GATC 5 cut(s) 133, 139, 274, 325, 364
MboII GAAGA 6 cut(s) 91, 596, 651, 695, 722, 747
MflI RGATCY 1 cut(s) 274
MluCI AATT 4 cut(s) 107, 406, 643, 692
MlyI GAGTC 2 cut(s) 56, 215
MmeI TCCRAC 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 346
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MseI TTAA 1 cut(s) 722
MspI CCGG 8 cut(s) 186, 791, 809, 815, 875, 911, 923, 929
Mva1269I GAATGC 2 cut(s) 240, 344
MvaI CCWGG 1 cut(s) 503
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 7 cut(s) 125, 160, 237, 314, 734, 737, 944
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 9 cut(s) 791, 809, 815, 875, 876, 911, 912, 923, 929
NdeII GATC 5 cut(s) 133, 139, 274, 325, 364
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 2 cut(s) 538, 959
NlaIV GGNNCC 6 cut(s) 93, 178, 179, 666, 813, 927
NsiI ATGCAT 1 cut(s) 346
PctI GAATGC 2 cut(s) 240, 344
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 296, 649, 752
PkrI GCNGC 5 cut(s) 121, 153, 427, 730, 739
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 2 cut(s) 55, 214
PpsI GAGTC 2 cut(s) 55, 214
PpuMI RGGWCCY 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 501
PspFI CCCAGC 5 cut(s) 760, 766, 772, 784, 943
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 6 cut(s) 93, 178, 179, 666, 813, 927
PspPI GGNCC 8 cut(s) 92, 177, 793, 811, 817, 877, 913, 925
PspPPI RGGWCCY 1 cut(s) 177
PstI CTGCAG 2 cut(s) 282, 978
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 274
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 32, 42
RsaNI GTAC 2 cut(s) 31, 41
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 5 cut(s) 120, 152, 426, 729, 738
Sau3AI GATC 5 cut(s) 133, 139, 274, 325, 364
Sau96I GGNCC 8 cut(s) 92, 177, 793, 811, 817, 877, 913, 925
SchI GAGTC 2 cut(s) 56, 215
SfaNI GCATC 2 cut(s) 150, 577
SfcI CTRYAG 2 cut(s) 278, 974
SgrAI CRCCGGYG 1 cut(s) 185
SinI GGWCC 1 cut(s) 177
SmaI CCCGGG 2 cut(s) 876, 912
Sse9I AATT 4 cut(s) 107, 406, 643, 692
SsiI CCGC 4 cut(s) 62, 119, 151, 174
SspMI CTAG 2 cut(s) 881, 917
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 82, 416
TaiI ACGT 1 cut(s) 219
TaqI TCGA 4 cut(s) 50, 111, 138, 168
TasI AATT 4 cut(s) 107, 406, 643, 692
TauI GCSGC 2 cut(s) 122, 154
TfiI GAWTC 3 cut(s) 296, 649, 752
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 4 cut(s) 438, 575, 870, 906
TseI GCWGC 3 cut(s) 425, 728, 737
TspDTI ATGAA 2 cut(s) 337, 996
TspMI CCCGGG 2 cut(s) 874, 910
TspRI CASTG 4 cut(s) 438, 575, 870, 906
VpaK11BI GGWCC 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XmaI CCCGGG 2 cut(s) 874, 910
XspI CTAG 2 cut(s) 881, 917
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.