Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010673

Physical Location & Seq

Genomic Coordinates Reverse (-)

7545042 .. 7550052

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCACATGAGACTTTGGCAAAGCATTTGTTTCATTGGGATAGCCAGCCAATGAGATGGGCTATGAGGTTGAGGGTGGCTCTGTATTTGGCTCAGGCTCTTGAGTATTGTAGTAGTAAAGGGCGTGCATTGTATCATGATCTCAATGCTTATAGAGTTTTGTTTGATAAGGATGCAAATCCGAGGCTGTCATGCTTTGGACTTATGAAGAATAGCAGGGATGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCTCCGGAGTACCTCAGAACAGGTAGGGTGACACAAGAAAGTGTGATTTATAGCTTTGGAACCTTGTTGCTAGATCTTCTAAGTGGCAAACATATTCCCCCCAGCCATGCACTAGATCTCATTCGTGGCAAGAATTTCCTGATGCTGATGGATTCGGCTCTGGAGGGTAATTTCTCAAATGATGATGGAACAGAGTTGGTACGCTTGGCTTCCCGTTGTCTGCAGTATGAAGCTCGTGAGAGGCCTAATGCGAAATCCCTAGCCACCGCTCTTATGTCACTTCAGAAAGAAACAGAGGTTGCATCGTATATTTTGATGGGTATCCCACAAGAAACTGCATCCTCAGCACAGCCACTGTCGTTAACACCTTTTGGTGAAGCTTGTTTGAGAATGGATCTAACAGCCATACATGAAATTCTGGAGAAGAATGGATACAAGGATGATGAGGGAATCGCTAATGAGCTTTCTTTCCAGTTGTGGACTAATCAAATGCAAGAGACTTTGGATTCTAAGAAGAGTGCAGATTCTGCTTTTAGAGCAAAAGACTACGCAACTGCAATTGATTCCTATACGCAATTCATTGATTGTGGAACAATGGTATCACCAACGGTGTATGCTCGGCGTTGTCTATCATACTTGATGAATGATATGGCACAAGAAGCCCTTGGGGATGCTATGCAAGCTCAGGTGATCTCTCCAGAGTGGCCCTGTGCTTTATATCTTCAAGCAGCTTGCCTATTCAAGCTTGGCATGGACAATGATGCACAAGAAACACTCAAAGATGGCACAAACTTGGAAGCCAAAAAGAACAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

40.07

Weight (kDa)

5.59

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	13 - 175	1.1e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	26 - 172	2.7e-12	Protein kinase domain
TPR_BSK1_C	PF25575	211 - 328	2.7e-63	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54030
fragaria_vesca	FvH4_6g12470 FvH4_6g12470 FvH4_6g12470 FvH4_6g12470 FvH4_6g12470
malus_domestica	MD04G1142000.v1.1 MD12G1156600.v1.1
prunus_persica	Prupe.6G267400_v2.0.a1 Prupe.6G267400_v2.0.a1 Prupe.6G267400_v2.0.a1
pyrus_communis	pycom04g12900
rosa_chinensis	RchiOBHm_Chr3g0464291
rosa_laevigata	RLG00000024711
rosa_roxburghii	Rroxscaffold_6G00415840
rosa_rugosa	Rorug03G0071200 Rorug03G0071300
rosa_samantha	Rh3BG133200 Rh3CG135500
rosa_wichuraiana	Rw3G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	2 cut(s)	388, 669
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	3 cut(s)	238, 266, 456
AgsI	TTSAA	2 cut(s)	980, 997
AluBI	AGCT	7 cut(s)	309, 488, 635, 718, 938, 986, 1000
AluI	AGCT	7 cut(s)	309, 488, 635, 718, 938, 986, 1000
Alw26I	GTCTC	2 cut(s)	5, 746
AlwI	GGATC	1 cut(s)	657
AlwNI	CAGNNNCTG	2 cut(s)	610, 782
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	497, 959
ApeKI	GCWGC	1 cut(s)	983
ApoI	RAATTY	2 cut(s)	388, 669
AspS9I	GGNCC	1 cut(s)	960
AsuHPI	GGTGA	4 cut(s)	295, 641, 849, 955
BaeI	ACNNNNGTAYC	2 cut(s)	837, 870
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BauI	CACGAG	1 cut(s)	489
BbvCI	CCTCAGC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	6 cut(s)	51, 215, 397, 434, 565, 1031
BciVI	GTATCC	2 cut(s)	587, 680
BcoDI	GTCTC	2 cut(s)	5, 746
BfaI	CTAG	3 cut(s)	326, 368, 515
BfmI	CTRYAG	1 cut(s)	476
BfuI	GTATCC	2 cut(s)	587, 680
BglII	AGATCT	2 cut(s)	328, 370
BisI	GCNGC	1 cut(s)	984
BlsI	GCNGC	1 cut(s)	985
BmgT120I	GGNCC	1 cut(s)	960
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	6 cut(s)	163, 387, 566, 602, 916, 1006
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	3 cut(s)	437, 695, 936
Bpu10I	CCTNAGC	3 cut(s)	93, 598, 939
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	177, 575
BsaJI	CCNNGG	2 cut(s)	182, 919
BsaWI	WCCGGW	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	727
Bse8I	GATNNNNATC	2 cut(s)	177, 575
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	182, 919
BseGI	GGATG	5 cut(s)	178, 226, 593, 700, 931
BseJI	GATNNNNATC	2 cut(s)	177, 575
BseMII	CTCAG	4 cut(s)	107, 283, 612, 953
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	995
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	2 cut(s)	499, 961
BsiSI	CCGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	5, 746
BsnI	GGCC	2 cut(s)	499, 961
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	139, 328, 370, 649, 945
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	2 cut(s)	499, 961
BspCNI	CTCAG	4 cut(s)	106, 282, 611, 952
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	657
BsrBI	CCGCTC	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	182, 919
BssMI	GATC	5 cut(s)	139, 328, 370, 649, 945
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	919
Bst2BI	CACGAG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	612, 865
Bst6I	CTCTTC	2 cut(s)	221, 764
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	47, 126, 936, 988
BstDEI	CTNAG	6 cut(s)	93, 269, 335, 598, 765, 939
BstF5I	GGATG	5 cut(s)	178, 226, 593, 700, 931
BstKTI	GATC	5 cut(s)	142, 331, 373, 652, 948
BstMAI	GTCTC	2 cut(s)	5, 746
BstMBI	GATC	5 cut(s)	139, 328, 370, 649, 945
BstMWI	GCNNNNNNNGC	5 cut(s)	599, 782, 791, 914, 935
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	995
BstX2I	RGATCY	3 cut(s)	328, 370, 649
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	3 cut(s)	328, 370, 649
BsuI	GTATCC	2 cut(s)	587, 680
BsuRI	GGCC	2 cut(s)	499, 961
BtsCI	GGATG	5 cut(s)	178, 226, 593, 700, 931
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	4 cut(s)	47, 126, 936, 988
CaiI	CAGNNNCTG	2 cut(s)	610, 782
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	960
Csp6I	GTAC	3 cut(s)	237, 265, 455
CviAII	CATG	6 cut(s)	8, 137, 192, 362, 665, 1006
CviQI	GTAC	3 cut(s)	237, 265, 455
DdeI	CTNAG	6 cut(s)	93, 269, 335, 598, 765, 939
DpnI	GATC	5 cut(s)	141, 330, 372, 651, 947
DpnII	GATC	5 cut(s)	139, 328, 370, 649, 945
Eam1104I	CTCTTC	2 cut(s)	221, 764
EarI	CTCTTC	2 cut(s)	221, 764
Eco130I	CCWWGG	1 cut(s)	919
Eco147I	AGGCCT	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	919
FaeI	CATG	6 cut(s)	11, 140, 195, 365, 668, 1009
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	6 cut(s)	7, 136, 191, 361, 664, 1005
Fnu4HI	GCNGC	1 cut(s)	984
FokI	GGATG	5 cut(s)	185, 233, 580, 707, 938
Fsp4HI	GCNGC	1 cut(s)	984
FspBI	CTAG	3 cut(s)	326, 368, 515
GluI	GCNGC	1 cut(s)	984
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	3 cut(s)	437, 695, 936
HaeIII	GGCC	2 cut(s)	499, 961
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	6 cut(s)	11, 140, 195, 365, 668, 1009
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	2 cut(s)	633, 998
HinfI	GANTC	5 cut(s)	407, 705, 761, 779, 818
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	4 cut(s)	295, 641, 849, 955
Hpy166II	GTNNAC	2 cut(s)	618, 735
Hpy188I	TCNGA	3 cut(s)	183, 272, 540
Hpy188III	TCNNGA	8 cut(s)	101, 137, 260, 394, 416, 491, 674, 953
Hpy8I	GTNNAC	2 cut(s)	618, 735
HpyCH4III	ACNGT	2 cut(s)	612, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	599, 782, 791, 914, 935
HpyF3I	CTNAG	6 cut(s)	93, 269, 335, 598, 765, 939
Hsp92II	CATG	6 cut(s)	11, 140, 195, 365, 668, 1009
Kpn2I	TCCGGA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	139, 328, 370, 649, 945
Lsp1109I	GCAGC	1 cut(s)	995
LweI	GCATC	6 cut(s)	163, 387, 566, 602, 916, 1006
MaeI	CTAG	3 cut(s)	326, 368, 515
MaeIII	GTNAC	2 cut(s)	283, 531
MalI	GATC	5 cut(s)	141, 330, 372, 651, 947
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	5 cut(s)	139, 328, 370, 649, 945
MboII	GAAGA	6 cut(s)	220, 238, 323, 691, 781, 968
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	3 cut(s)	328, 370, 649
MluCI	AATT	5 cut(s)	388, 424, 669, 813, 830
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	1 cut(s)	617
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	813
MwoI	GCNNNNNNNGC	5 cut(s)	599, 782, 791, 914, 935
NdeII	GATC	5 cut(s)	139, 328, 370, 649, 945
NlaIII	CATG	6 cut(s)	11, 140, 195, 365, 668, 1009
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	2 cut(s)	283, 531
PagI	TCATGA	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	499
PfeI	GAWTC	5 cut(s)	407, 705, 761, 779, 818
PkrI	GCNGC	1 cut(s)	985
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	960
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	2 cut(s)	610, 782
PsuI	RGATCY	3 cut(s)	328, 370, 649
RsaI	GTAC	3 cut(s)	238, 266, 456
RsaNI	GTAC	3 cut(s)	237, 265, 455
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	1 cut(s)	984
Sau3AI	GATC	5 cut(s)	139, 328, 370, 649, 945
Sau96I	GGNCC	1 cut(s)	960
SfaNI	GCATC	6 cut(s)	163, 387, 566, 602, 916, 1006
SfcI	CTRYAG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	388, 424, 669, 813, 830
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	3 cut(s)	326, 368, 515
StuI	AGGCCT	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	919
TaaI	ACNGT	2 cut(s)	612, 865
TasI	AATT	5 cut(s)	388, 424, 669, 813, 830
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	5 cut(s)	407, 705, 761, 779, 818
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	2 cut(s)	283, 531
TseI	GCWGC	1 cut(s)	983
Tsp45I	GTSAC	2 cut(s)	283, 531
TspDTI	ATGAA	6 cut(s)	23, 221, 498, 681, 823, 911
TspRI	CASTG	1 cut(s)	615
XapI	RAATTY	2 cut(s)	388, 669
XspI	CTAG	3 cut(s)	326, 368, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.