Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010673

Physical Location & Seq

Genomic Coordinates Reverse (-)

11080327 .. 11083962

Gene Structure 3636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAGCCCGCTGCTCCAGATTCTCTCTCTGCTGGTTCCACTCCCACCTTAAACCGTCCGTCCTCGAATCCACCGACCTCGAGAATGGGGGCGGCAAAAGCGACAAAAACTCGTGCCCGAGCTTCACCGAGTTCAGCTTAGACCAACTGAAAGCCGCCACGTGCGGCTTCTCCTCCGACAACATAGTCTCGGAGCACGGCGAGAAAGCCCCCAACGTTGTCTACAAAGGAAAGCTCGACAACAACGCCGACCGTTGGATCGCCGTCAAGCGCTTCAACAAGCTGGCCTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCAAGATCGGTTGGGACATTGAGAAGTGAGAGATTGGCGAATCTGATTGGGTGTTGTTGTGAAGGAGATGAGAGGTTGTTGGTGGCTGAGTTTATGCCACATGAGACTTTGGCAAAGCATTTGTTTCATTGGGAGAGCCAGCCAATGAGATGGGCTATGAGGTTGAGGGTGGCTCTGTATTTGGCTCAGGCTCTTGAGTATTGTAGTGGTAAAGGGCGCGCATTGTATCATGATCTCAATGCTTACAGGGTTTTGTTTGATAAGGTTGCATCCTATGTTTTGATGGGTATCCCACAAGAAACTGCATCGTCAACACAGCCACTGTCATTAACACCTTTTGGTGAAGCTTGTTTGAGAATGGATCTGACAGCCATACATGAAATACTGGAGAAGAATGGATACAAGGATGATGAGGGAATTGCTAATGAGCTATCTTTCCAGCTGTGGACTAATCAAATGCAGGAGACCTTGGATTCTAAGAAGAGTGCAGATTCTGCTTTTAGAGCGAAAGACTACGCAACTGCAATTGATTCCTATACACAATTCATTGATTGTGGGACAATGGTATCACCAACGGTGTATGCTCGGCGTTGTCTGTCATACTTGATGAATGATATGGCACAAGAAGCCCTTGGGGATGCTATGCAAGCCCAGGTGATTTCTCCCGAGTGGCCCTGTGCTTTATATCTTCAAGCAGCTTGCCTGTTCAAGCTTGGAATGGACAATGATGCACAAGAAACGCTCAAAGATGGCACAAACTTGGAAGCCAAAAAGAACAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

367

Amino Acids

41.22

Weight (kDa)

5.59

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 194	6.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	73 - 194	2.1e-06	Protein kinase domain
TPR_BSK1_C	PF25575	221 - 338	2.9e-63	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54030
fragaria_vesca	FvH4_6g12470 FvH4_6g12470 FvH4_6g12470 FvH4_6g12470 FvH4_6g12470
malus_domestica	MD04G1142000.v1.1 MD12G1156600.v1.1
prunus_persica	Prupe.6G267400_v2.0.a1 Prupe.6G267400_v2.0.a1 Prupe.6G267400_v2.0.a1
pyrus_communis	pycom04g12900
rosa_chinensis	RchiOBHm_Chr3g0464291
rosa_laevigata	RLG00000024711
rosa_roxburghii	Rroxscaffold_6G00415840
rosa_rugosa	Rorug03G0071200 Rorug03G0071300
rosa_samantha	Rh3BG133200 Rh3CG135500
rosa_wichuraiana	Rw3G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AbsI	CCTCGAGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	537
AciI	CCGC	4 cut(s)	10, 93, 156, 165
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	2 cut(s)	266, 687
AcvI	CACGTG	1 cut(s)	162
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	277, 1010, 1027
AjnI	CCWGG	2 cut(s)	287, 969
AluBI	AGCT	9 cut(s)	123, 138, 235, 283, 665, 748, 760, 1016, 1030
AluI	AGCT	9 cut(s)	123, 138, 235, 283, 665, 748, 760, 1016, 1030
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	3 cut(s)	193, 416, 776
AlwI	GGATC	2 cut(s)	266, 687
AlwNI	CAGNNNCTG	2 cut(s)	640, 812
Ama87I	CYCGRG	4 cut(s)	80, 118, 311, 983
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	3 cut(s)	285, 290, 989
ApeKI	GCWGC	2 cut(s)	12, 1013
AspLEI	GCGC	3 cut(s)	273, 537, 539
AspS9I	GGNCC	2 cut(s)	291, 990
AsuHPI	GGTGA	4 cut(s)	118, 671, 879, 985
AvaI	CYCGRG	4 cut(s)	80, 118, 311, 983
BaeGI	GKGCMC	1 cut(s)	119
BaeI	ACNNNNGTAYC	2 cut(s)	867, 900
BanII	GRGCYC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	1 cut(s)	112
BbrPI	CACGTG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	1025
BccI	CCATC	3 cut(s)	462, 595, 1061
BceAI	ACGGC	2 cut(s)	214, 248
BciT130I	CCWGG	2 cut(s)	289, 971
BciVI	GTATCC	2 cut(s)	617, 710
BcoDI	GTCTC	3 cut(s)	193, 416, 776
BfoI	RGCGCY	1 cut(s)	274
BfuI	GTATCC	2 cut(s)	617, 710
BisI	GCNGC	5 cut(s)	13, 94, 156, 166, 1014
BlsI	GCNGC	5 cut(s)	14, 95, 157, 167, 1015
Bme1390I	CCNGG	2 cut(s)	289, 971
BmeT110I	CYCGRG	4 cut(s)	80, 118, 311, 983
BmgT120I	GGNCC	2 cut(s)	291, 990
BmiI	GGNNCC	2 cut(s)	7, 38
BmrFI	CCNGG	2 cut(s)	289, 971
BmsI	GCATC	4 cut(s)	596, 632, 946, 1036
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	786, 949, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	289, 971
BseDI	CCNNGG	3 cut(s)	786, 949, 969
BseGI	GGATG	3 cut(s)	587, 730, 961
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	396, 518
BseNI	ACTGG	1 cut(s)	708
BsePI	GCGCGC	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	1025
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	287, 292, 991
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	4 cut(s)	80, 118, 311, 983
BslFI	GGGAC	2 cut(s)	346, 889
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	3 cut(s)	193, 416, 776
BsmFI	GGGAC	2 cut(s)	346, 889
BsnI	GGCC	3 cut(s)	287, 292, 991
Bso31I	GGTCTC	1 cut(s)	776
BsoBI	CYCGRG	4 cut(s)	80, 118, 311, 983
Bsp1286I	GDGCHC	3 cut(s)	10, 119, 198
Bsp143I	GATC	4 cut(s)	258, 323, 550, 679
BspACI	CCGC	4 cut(s)	10, 93, 156, 165
BspANI	GGCC	3 cut(s)	287, 292, 991
BspCNI	CTCAG	2 cut(s)	397, 517
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	7, 38
BspPI	GGATC	2 cut(s)	266, 687
BspTNI	GGTCTC	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	708
BssECI	CCNNGG	3 cut(s)	786, 949, 969
BssHII	GCGCGC	1 cut(s)	535
BssMI	GATC	4 cut(s)	258, 323, 550, 679
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	786, 949
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	289, 971
Bst4CI	ACNGT	4 cut(s)	57, 254, 642, 895
Bst6I	CTCTTC	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	6 cut(s)	10, 285, 458, 537, 966, 1018
BstDEI	CTNAG	4 cut(s)	139, 405, 504, 795
BstF5I	GGATG	3 cut(s)	587, 730, 961
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	273, 537, 539
BstKTI	GATC	4 cut(s)	261, 326, 553, 682
BstMAI	GTCTC	3 cut(s)	193, 416, 776
BstMBI	GATC	4 cut(s)	258, 323, 550, 679
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 289, 812, 821, 944, 965
BstNI	CCWGG	2 cut(s)	289, 971
BstSCI	CCNGG	2 cut(s)	287, 969
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	1025
BstX2I	RGATCY	1 cut(s)	679
BstXI	CCANNNNNNTGG	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	679
BsuI	GTATCC	2 cut(s)	617, 710
BsuRI	GGCC	3 cut(s)	287, 292, 991
BtsCI	GGATG	3 cut(s)	587, 730, 961
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	6 cut(s)	10, 285, 458, 537, 966, 1018
CaiI	CAGNNNCTG	2 cut(s)	640, 812
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	3 cut(s)	273, 537, 539
Cfr13I	GGNCC	2 cut(s)	291, 990
CviAII	CATG	3 cut(s)	419, 548, 695
DdeI	CTNAG	4 cut(s)	139, 405, 504, 795
DpnI	GATC	4 cut(s)	260, 325, 552, 681
DpnII	GATC	4 cut(s)	258, 323, 550, 679
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	786, 949
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	776
Eco47III	AGCGCT	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	162
Eco88I	CYCGRG	4 cut(s)	80, 118, 311, 983
EcoRII	CCWGG	2 cut(s)	287, 969
EcoT14I	CCWWGG	2 cut(s)	786, 949
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	786, 949
FaeI	CATG	3 cut(s)	422, 551, 698
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	2 cut(s)	346, 889
FatI	CATG	3 cut(s)	418, 547, 694
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	13, 94, 156, 166, 1014
FokI	GGATG	3 cut(s)	574, 737, 968
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	5 cut(s)	13, 94, 156, 166, 1014
GlaI	GCGC	3 cut(s)	272, 536, 538
GluI	GCNGC	5 cut(s)	13, 94, 156, 166, 1014
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	287, 292, 991
HhaI	GCGC	3 cut(s)	273, 537, 539
Hin1II	CATG	3 cut(s)	422, 551, 698
Hin6I	GCGC	3 cut(s)	271, 535, 537
HinP1I	GCGC	3 cut(s)	271, 535, 537
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	2 cut(s)	663, 1028
HinfI	GANTC	7 cut(s)	21, 68, 296, 358, 791, 809, 848
HphI	GGTGA	4 cut(s)	118, 671, 879, 985
Hpy166II	GTNNAC	3 cut(s)	223, 630, 765
Hpy188I	TCNGA	4 cut(s)	178, 193, 363, 684
Hpy188III	TCNNGA	5 cut(s)	18, 82, 512, 548, 983
Hpy8I	GTNNAC	3 cut(s)	223, 630, 765
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	4 cut(s)	57, 254, 642, 895
HpyCH4IV	ACGT	2 cut(s)	161, 216
HpyCH4V	TGCA	7 cut(s)	587, 623, 778, 806, 842, 964, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 289, 812, 821, 944, 965
HpyF3I	CTNAG	4 cut(s)	139, 405, 504, 795
HpySE526I	ACGT	2 cut(s)	161, 216
Hsp92II	CATG	3 cut(s)	422, 551, 698
HspAI	GCGC	3 cut(s)	271, 535, 537
Kzo9I	GATC	4 cut(s)	258, 323, 550, 679
LmnI	GCTCC	3 cut(s)	5, 20, 193
Lsp1109I	GCAGC	1 cut(s)	1025
LweI	GCATC	4 cut(s)	596, 632, 946, 1036
MaeII	ACGT	2 cut(s)	161, 216
MalI	GATC	4 cut(s)	260, 325, 552, 681
MboI	GATC	4 cut(s)	258, 323, 550, 679
MboII	GAAGA	3 cut(s)	721, 811, 998
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	3 cut(s)	10, 119, 198
MluCI	AATT	4 cut(s)	305, 735, 843, 860
MmeI	TCCRAC	2 cut(s)	201, 236
MnlI	CCTC	9 cut(s)	74, 89, 184, 307, 320, 384, 471, 477, 724
MseI	TTAA	2 cut(s)	51, 647
MspA1I	CMGCKG	2 cut(s)	12, 760
MspR9I	CCNGG	2 cut(s)	289, 971
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	289, 971
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	6 cut(s)	99, 289, 812, 821, 944, 965
NdeII	GATC	4 cut(s)	258, 323, 550, 679
NlaIII	CATG	3 cut(s)	422, 551, 698
NlaIV	GGNNCC	2 cut(s)	7, 38
NmeAIII	GCCGAG	1 cut(s)	883
PaeR7I	CTCGAG	2 cut(s)	80, 311
PagI	TCATGA	1 cut(s)	547
PauI	GCGCGC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	7 cut(s)	21, 68, 296, 358, 791, 809, 848
PkrI	GCNGC	5 cut(s)	14, 95, 157, 167, 1015
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	287, 969
PspCI	CACGTG	1 cut(s)	162
PspGI	CCWGG	2 cut(s)	287, 969
PspN4I	GGNNCC	2 cut(s)	7, 38
PspPI	GGNCC	2 cut(s)	291, 990
PspXI	VCTCGAGB	1 cut(s)	311
PstNI	CAGNNNCTG	2 cut(s)	640, 812
PsuI	RGATCY	1 cut(s)	679
PteI	GCGCGC	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	760
SaqAI	TTAA	2 cut(s)	51, 647
SatI	GCNGC	5 cut(s)	13, 94, 156, 166, 1014
Sau3AI	GATC	4 cut(s)	258, 323, 550, 679
Sau96I	GGNCC	2 cut(s)	291, 990
ScrFI	CCNGG	2 cut(s)	289, 971
SduI	GDGCHC	3 cut(s)	10, 119, 198
SfaNI	GCATC	4 cut(s)	596, 632, 946, 1036
Sfr274I	CTCGAG	2 cut(s)	80, 311
SlaI	CTCGAG	2 cut(s)	80, 311
SmlI	CTYRAG	3 cut(s)	80, 311, 512
SmoI	CTYRAG	3 cut(s)	80, 311, 512
Sse9I	AATT	4 cut(s)	305, 735, 843, 860
SsiI	CCGC	4 cut(s)	10, 93, 156, 165
StyD4I	CCNGG	2 cut(s)	287, 969
StyI	CCWWGG	2 cut(s)	786, 949
TaaI	ACNGT	4 cut(s)	57, 254, 642, 895
TaiI	ACGT	2 cut(s)	164, 219
TaqI	TCGA	4 cut(s)	66, 81, 237, 312
TasI	AATT	4 cut(s)	305, 735, 843, 860
TauI	GCSGC	3 cut(s)	96, 158, 168
TfiI	GAWTC	7 cut(s)	21, 68, 296, 358, 791, 809, 848
Tru1I	TTAA	2 cut(s)	51, 647
Tru9I	TTAA	2 cut(s)	51, 647
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	2 cut(s)	12, 1013
TspDTI	ATGAA	4 cut(s)	434, 711, 853, 941
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	645
XhoI	CTCGAG	2 cut(s)	80, 311
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.