Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008676

Physical Location & Seq

Genomic Coordinates Forward (+)

5690755 .. 5699461

Gene Structure 8707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0071300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3306 bp

ATGTCGAATTTGTGCAGGGAATTGGTGTTACTGGTCCTCCAATTCCTTGACGAGGAGAAGTTCAGAGGGGCCATGCATAAGCTTGAGCAGGAATCAGGGTTCTTTTTCAACATGAAGTACTTTGAGGAGAAGATTTGGACTGGAGAATGGGAAGAAGTTGAAAAGTATTTATCAGGATTTACGAAATTCAATGACAATCGATTTTCACTGAAAATAATGTTTGAAATATCAAAGCAGAAATATCTGGAAGCCCTCGATCAGAACGAGAAGGTTGGGGCCATTGACATCTTAGTCAATGATCTCCAGAAGTTTGCTCCTTATAATCAAGAACTTTACAAGGAGATCACACAGCTTTTAACCCTCCGAAACTTTCGGGAAAATGCACATCTCACTCAGTACGGCGACACCAGATCAGCTCGTCATAGAATGGTGGTAGAGCTCAAAAAGCTCATAAAAGCAAACCCTCTATTGAAGGATAAGCTTTATTTTCCTTCTGTGAGGTCACCCAGACTGCGGACTCTCATTAATCAGAGTCTTAACTGGCAGCACCAGCAATGCAAGGACCCGGTTCCGAATCCAGAAATAAAAACTCTGTTCATAGATCATTACTGTCCACCACCTCTAACTGGTCCTCTTGCTCTAGCAAATGTCAATCAGCCATTTGCTGCAATTGAATTTCCTGCTCCTTTTCCCTCAATGGAAGGAGCTATTGTTCCGTATCAGGCCCCTGGAGAAGTTCCAAGCCTAAAGCAGCCAAGAACAGCTCTGGAAACTTCTGGTGGGGTTGATCCTTCTAGTACTGGTTTTACTGCTATTGACCGGATGGCAAAAGAACTGCAACATGTTCGATCGAACTTGGAGGGTACCTTTCAAACTTCTAGACTGCTTCAAACTTCCTGGTTGGTGGAGAACCTACCGAGAAATGTGGCTTATAGCATGCGTCAAGGATCTACAGTCACAAGCATGGATTTTCATCCTCATCACCATGCATTGCTCCTAGTTGGTGCTAGCAATGGTGAAATTAGTCTTTGGGAACTTGGAACTCGGCAGAGGGTGGCTTCGCAGCCATTCAGAATATGGAATACGGCAGCACGTTCATCAGAACTTCAGAGCACACTTGCCAATGAAGACACATATATATCTGTGAGCCGTGTTACATGGAGTCCAGATGGGAACTTTTTTGGAGTTGCATTTACTAAAAATTTGATTCACTTGTATGCTTTTTCTGGAATTAGTGATCTATGCCGGTATTTGGAGGTTGACGCCCATGATGGTGGTGTGAATGACTTGGCTTTTGATTATCGAAACAACGAACTGTGTGTTATCACATGTGGAGATGACAAGCTAATAAAGGTATGGGATATAGCAGGACGAAACTTATATAACTTTGATGGTCATGAAGCACCGGTCTATTCAGTGTGTCCTTATCATAACAAGGACGTTCAGTACATATATTCAACTTCTACTGATGGGAAGATAAAGACCTGGATGTACGACAATGGGGGTCCTAGATCTGGCTGTGATGCTCCTGGCAACTGGTGTACTACATTGCTTTTCAGTCCGGATGGTAACCGAATGTTCTCTTGTGGAACAAATAAAGAGGGAGACACTTTTCTAGTTCAATGGAGCGAAAATGAAGGAATAATTAAAGAAGGAGCAAAAAAGAGAATTTATTCTGGGTTCGGTAAGAAATCTGAAGGGGTTGTGCATTTTGACATAACGAAAAAGCATTTTTTGGCTGTGGGTGAAGATAGCCAGATCAAGTATTGGGATATGGACCATGATGATATTCTGACTAGCACGGACGCCCAGGGTGAACTGCCGAGTCGTCCTCGCTTGAGATTCAACAAGGAAGGTAGTCTTCTTGCTGTCACAACGGCACATGAGGGATTCATGATACTTGCAAATGGAATAGGACGCCTGAGAGTTCATGGAGTCACTGCAACTTATCGTGACAGGTCGAAAGATCCTACTGAATCCACTGCAAACAAGGCATCTGGCTCATCTTTGGTTGCAAATGTCAGTGAGGCCAATAGGAAATCTGACAGGGGCTCTCCTGCTAGGTCTACAACATCTCAGAATGGAGCTAATAATGGAGCTAATACCAAGAGTAGAAGTTCCAAGAAACGGAAAACTGTGGAGGAGGTAATCAATAAATCCAAACCTTGGCAGTTGACTGACATTCGGGATCCTGTAAGGTGTCGTTTAGGTGTTATGCCTGAAACAGATAATTCCTGCAAGGTTGTTCGACTCCTATATACAAGTAACGGTACTGCCATCTTGGCACTCGGGTCAAATGGTGTACAGAGGCTGTGGAGGTGGCCCCGTACTAGAGGTCGAATTTCAAAGGCCAGCGCCAGTGTTGTTCCGCAGCTGGTGAAAGGGGACAATGGTCCTGTTATGGCCAACGATGTCTCAGGTGTCAACCTTGAAGAGGCGGTTCCCTGCATAGCGCTCTCAAAGAATGACGCGTATGTAATGTCAGCTTATGGTGGAAGGATCAGATTATTCGACATTTATAATTTGGCGGTAATGATAACTTTCGGGGAACTTCCCCCTGCACCAACTGAAATTGCATTCAATCCTCGGGATAATAATATCATGGCCATTGGAATGCAAGATTGCACCATACAGATTTTCTTTTGTAGACTTAACGAGGTAAGAGCAATCTTGAAGTTTCACAAGAAGCGGATAACTGGTTTAGTTTTCTCGTTCTTTCTTGGTATACTCGTTTCAGCTAGTGCCGATGGTCAAATATGTGTGTGGAGCATTGATCAATGGGAGAAGAAACAATCTGTTGCCTTATGTTTAGGTTCTGAAAAGACACCTGAGGGTGCCACTCAATTGCAGTTCCACTGCAACCAAGTCCGCTTACTGGTGTTTCATGAAACACAACTGGCAGTTTATGATGCCTCAAAGATGAAGCTCCTCCGGCAGTGGCTTCCACACGGTATGCTTTCTGCTCCCATACGTCATGCAGCATACTCCTTTGACAGTCGACTGGTTTATACCGCCTTCAGTGATGGTAACATCGGAGTATTTGATGCCAGTAGCCTAAGACTGAGATGTCGTATTGCTCCATCAGCATACTTACCGGAAGCAGTCTTGAAGAGGACCGATGAATTGTATCCTCTTGTCATTGCAGGAAATCCCCATGTACAAAACCAGTTTGCTGTTGGGTTGTCTGATGGTAATGTTAAGGTCATTGAGCCATTATTTGGTGACTGGGGGTCCTCCCCACCTCCTGATGATGAAGCTTCATCAAGTGCCAACAACAACCACTCCTCCAGACAAGTACAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

1101

Amino Acids

123.27

Weight (kDa)

8.22

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	6 - 34	1.2e-08	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	2.1e-52	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	4.8e-22	TOPLESS, zinc finger domain
Beta-prop_WDR3_2nd	PF25172	317 - 533	6.5e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	357 - 534	2.2e-15	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	358 - 532	8.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	381 - 597	3.2e-19	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	381 - 630	2.8e-16	THOC3 beta-propeller domain
WD40_Prp19	PF24814	422 - 532	2.2e-07	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	436 - 500	2.2e-07	WDHD1 first WD40 domain
EIF3I	PF24805	440 - 603	6.4e-06	EIF3I
WD40_WDHD1_1st	PF24817	803 - 1018	8.6e-14	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	808 - 932	3.8e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	811 - 1025	3.1e-09	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	811 - 931	3.5e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	811 - 930	1.8e-10	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	813 - 1020	2.3e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	814 - 1013	4.4e-07	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	820 - 925	3e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	833 - 928	5.7e-07	WDR90/POC16, second beta-propeller
WD40_Prp19	PF24814	856 - 1018	1.2e-09	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	894 - 1019	1.5e-06	WDR36/Utp21 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01030 AT5G01030 AT5G01030
fragaria_vesca	FvH4_6g12500 FvH4_6g12500
malus_domestica	MD04G1141700.v1.1 MD12G1156300.v1.1
prunus_persica	Prupe.6G267100_v2.0.a1
pyrus_communis	pycom04g12880 pycom12g14840
rosa_chinensis	RchiOBHm_Chr3g0464321
rosa_laevigata	RLG00000024708
rosa_multiflora	Rmu_sc0003074.1_g000030 Rmu_sc0007811.1_g000001 Rmu_sc0029720.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415810
rosa_rugosa	Rorug03G0071300 Rorug03G0071300 Rorug03G0071400
rosa_samantha	Rh3BG133500 Rh3CG135800 Rh3DG135000
rosa_wichuraiana	Rw3G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	321, 2520
AasI	GACNNNNNNGTC	2 cut(s)	290, 3066
Acc65I	GGTACC	1 cut(s)	863
AccB1I	GGYRCC	2 cut(s)	863, 2834
AccB7I	CCANNNNNTGG	2 cut(s)	2166, 3218
AccI	GTMKAC	4 cut(s)	2066, 2647, 2725, 2998
AccII	CGCG	1 cut(s)	2471
AccIII	TCCGGA	1 cut(s)	1561
AciI	CCGC	7 cut(s)	514, 2369, 2438, 2528, 2689, 2869, 3012
AclWI	GGATC	6 cut(s)	782, 955, 1961, 2183, 2196, 2507
AcoI	YGGCCR	2 cut(s)	2403, 2604
AcsI	RAATTY	6 cut(s)	7, 185, 674, 1201, 1668, 2340
AcuI	CTGAAG	3 cut(s)	1091, 1716, 3001
AcyI	GRCGYC	3 cut(s)	1263, 1806, 1918
AfeI	AGCGCT	1 cut(s)	2454
AflIII	ACRYGT	3 cut(s)	841, 1328, 2469
AgeI	ACCGGT	1 cut(s)	1405
AhdI	GACNNNNNGTC	1 cut(s)	3229
AjnI	CCWGG	5 cut(s)	727, 896, 1484, 1528, 1809
AloI	GAACNNNNNNTCC	4 cut(s)	83, 115, 696, 728
Alw21I	GWGCWC	2 cut(s)	441, 1115
Alw26I	GTCTC	2 cut(s)	1599, 2419
AlwI	GGATC	6 cut(s)	782, 955, 1961, 2183, 2196, 2507
AlwNI	CAGNNNCTG	1 cut(s)	2311
Ama87I	CYCGRG	2 cut(s)	2288, 2586
Aor13HI	TCCGGA	1 cut(s)	1561
Aor51HI	AGCGCT	1 cut(s)	2454
AoxI	GGCC	8 cut(s)	69, 276, 723, 2028, 2321, 2349, 2403, 2604
ApeKI	GCWGC	7 cut(s)	544, 665, 751, 1063, 1088, 2371, 2978
ApoI	RAATTY	6 cut(s)	7, 185, 674, 1201, 1668, 2340
ArsI	GACNNNNNNTTYG	2 cut(s)	1277, 1309
AseI	ATTAAT	1 cut(s)	525
AsiGI	ACCGGT	1 cut(s)	1405
Asp700I	GAANNNNTTC	1 cut(s)	1672
Asp718I	GGTACC	1 cut(s)	863
AspLEI	GCGC	2 cut(s)	2357, 2455
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	7 cut(s)	495, 974, 1028, 1757, 1826, 2389, 3233
AsuNHI	GCTAGC	1 cut(s)	1007
AvaI	CYCGRG	2 cut(s)	2288, 2586
AvaII	GGWCC	8 cut(s)	34, 562, 629, 1505, 1777, 2393, 3114, 3231
AxyI	CCTNAGG	1 cut(s)	2829
BalI	TGGCCA	2 cut(s)	2405, 2606
BamHI	GGATCC	1 cut(s)	2188
BanI	GGYRCC	2 cut(s)	863, 2834
BanII	GRGCYC	2 cut(s)	441, 2054
BbsI	GAAGAC	2 cut(s)	1134, 1853
Bbv12I	GWGCWC	2 cut(s)	441, 1115
BbvI	GCAGC	7 cut(s)	556, 652, 763, 1075, 1100, 2383, 2990
BceAI	ACGGC	4 cut(s)	415, 1101, 1134, 1893
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	5 cut(s)	729, 898, 1486, 1530, 1811
BciVI	GTATCC	1 cut(s)	3138
BclI	TGATCA	1 cut(s)	2773
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	1599, 2419
BfmI	CTRYAG	1 cut(s)	951
BfoI	RGCGCY	2 cut(s)	2358, 2456
BfuI	GTATCC	1 cut(s)	3138
BglI	GCCNNNNNGGC	1 cut(s)	2282
BglII	AGATCT	1 cut(s)	1511
BisI	GCNGC	7 cut(s)	545, 666, 752, 1064, 1089, 2372, 2979
BlsI	GCNGC	7 cut(s)	546, 667, 753, 1065, 1090, 2373, 2980
BmcAI	AGTACT	2 cut(s)	119, 799
Bme1390I	CCNGG	6 cut(s)	566, 729, 898, 1486, 1530, 1811
Bme18I	GGWCC	8 cut(s)	34, 562, 629, 1505, 1777, 2393, 3114, 3231
BmeRI	GACNNNNNGTC	1 cut(s)	3229
BmeT110I	CYCGRG	2 cut(s)	2288, 2586
BmrFI	CCNGG	6 cut(s)	566, 729, 898, 1486, 1530, 1811
BmrI	ACTGGG	1 cut(s)	3235
BmsI	GCATC	4 cut(s)	1513, 2003, 2899, 3034
BmtI	GCTAGC	1 cut(s)	1011
BmuI	ACTGGG	1 cut(s)	3235
BoxI	GACNNNNGTC	1 cut(s)	2391
BpiI	GAAGAC	2 cut(s)	1134, 1853
BplI	GAGNNNNNCTC	2 cut(s)	1816, 1848
BpmI	CTGGAG	4 cut(s)	162, 287, 750, 3271
BpuEI	CTTGAG	2 cut(s)	104, 1858
BpuMI	CCSGG	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	972
BsaHI	GRCGYC	3 cut(s)	1263, 1806, 1918
BsaJI	CCNNGG	5 cut(s)	727, 1809, 1810, 2165, 2585
BsaWI	WCCGGW	4 cut(s)	819, 1405, 1561, 3094
BsaXI	ACNNNNNCTCC	8 cut(s)	21, 51, 696, 726, 3266, 3269, 3296, 3299
Bse118I	RCCGGY	2 cut(s)	1245, 1405
Bse21I	CCTNAGG	1 cut(s)	2829
Bse3DI	GCAATG	5 cut(s)	560, 989, 1018, 1547, 3138
Bse8I	GATNNNNATC	1 cut(s)	972
BseAI	TCCGGA	1 cut(s)	1561
BseBI	CCWGG	5 cut(s)	729, 898, 1486, 1530, 1811
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	5 cut(s)	727, 1809, 1810, 2165, 2585
BseGI	GGATG	4 cut(s)	828, 973, 1494, 1570
BseJI	GATNNNNATC	1 cut(s)	972
BseMI	GCAATG	5 cut(s)	560, 989, 1018, 1547, 3138
BseMII	CTCAG	6 cut(s)	407, 1913, 2090, 2430, 2820, 3053
BseRI	GAGGAG	5 cut(s)	68, 140, 2156, 2918, 3274
BseXI	GCAGC	7 cut(s)	556, 652, 763, 1075, 1100, 2383, 2990
BsgI	GTGCAG	2 cut(s)	34, 2544
Bsh1236I	CGCG	1 cut(s)	2471
Bsh1285I	CGRYCG	1 cut(s)	851
BshFI	GGCC	8 cut(s)	71, 278, 725, 2030, 2323, 2351, 2405, 2606
BshNI	GGYRCC	2 cut(s)	863, 2834
BshTI	ACCGGT	1 cut(s)	1405
BshVI	ATCGAT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	851
BsiHKAI	GWGCWC	2 cut(s)	441, 1115
BsiHKCI	CYCGRG	2 cut(s)	2288, 2586
BsiSI	CCGG	7 cut(s)	566, 820, 1246, 1406, 1562, 2932, 3095
BslFI	GGGAC	1 cut(s)	2399
BsmAI	GTCTC	2 cut(s)	1599, 2419
BsmFI	GGGAC	1 cut(s)	2399
BsmI	GAATGC	2 cut(s)	2576, 2619
BsnI	GGCC	8 cut(s)	71, 278, 725, 2030, 2323, 2351, 2405, 2606
BsoBI	CYCGRG	2 cut(s)	2288, 2586
Bsp1286I	GDGCHC	3 cut(s)	441, 1115, 2054
Bsp13I	TCCGGA	1 cut(s)	1561
Bsp1407I	TGTACA	2 cut(s)	2302, 3157
BspACI	CCGC	7 cut(s)	514, 2369, 2438, 2528, 2689, 2869, 3012
BspANI	GGCC	8 cut(s)	71, 278, 725, 2030, 2323, 2351, 2405, 2606
BspCNI	CTCAG	6 cut(s)	406, 1914, 2089, 2429, 2821, 3054
BspDI	ATCGAT	1 cut(s)	199
BspEI	TCCGGA	1 cut(s)	1561
BspFNI	CGCG	1 cut(s)	2471
BspHI	TCATGA	3 cut(s)	1396, 1893, 2884
BspOI	GCTAGC	1 cut(s)	1011
BspPI	GGATC	6 cut(s)	782, 955, 1961, 2183, 2196, 2507
BspT107I	GGYRCC	2 cut(s)	863, 2834
BsrDI	GCAATG	5 cut(s)	560, 989, 1018, 1547, 3138
BsrFI	RCCGGY	2 cut(s)	1245, 1405
BsrGI	TGTACA	2 cut(s)	2302, 3157
BssAI	RCCGGY	2 cut(s)	1245, 1405
BssECI	CCNNGG	5 cut(s)	727, 1809, 1810, 2165, 2585
BssNAI	GTATAC	1 cut(s)	2726
BssNI	GRCGYC	3 cut(s)	1263, 1806, 1918
BssT1I	CCWWGG	1 cut(s)	2165
Bst1107I	GTATAC	1 cut(s)	2726
Bst2UI	CCWGG	5 cut(s)	729, 898, 1486, 1530, 1811
Bst4CI	ACNGT	7 cut(s)	611, 955, 1317, 2137, 2270, 2951, 2996
Bst6I	CTCTTC	2 cut(s)	2427, 3104
BstACI	GRCGYC	3 cut(s)	1263, 1806, 1918
BstAUI	TGTACA	2 cut(s)	2302, 3157
BstC8I	GCNNGC	3 cut(s)	938, 1009, 2353
BstDEI	CTNAG	8 cut(s)	289, 393, 1922, 2076, 2416, 2829, 3056, 3062
BstEII	GGTNACC	2 cut(s)	501, 1568
BstENI	CCTNNNNNAGG	2 cut(s)	50, 2432
BstF5I	GGATG	4 cut(s)	828, 973, 1494, 1570
BstFNI	CGCG	1 cut(s)	2471
BstH2I	RGCGCY	2 cut(s)	2358, 2456
BstHHI	GCGC	2 cut(s)	2357, 2455
BstMAI	GTCTC	2 cut(s)	1599, 2419
BstMCI	CGRYCG	1 cut(s)	851
BstMWI	GCNNNNNNNGC	6 cut(s)	445, 550, 1991, 2282, 2932, 3083
BstNI	CCWGG	5 cut(s)	729, 898, 1486, 1530, 1811
BstNSI	RCATGY	3 cut(s)	845, 940, 1332
BstPAI	GACNNNNGTC	1 cut(s)	2391
BstPI	GGTNACC	2 cut(s)	501, 1568
BstSCI	CCNGG	6 cut(s)	564, 727, 896, 1484, 1528, 1809
BstSFI	CTRYAG	1 cut(s)	951
BstUI	CGCG	1 cut(s)	2471
BstV1I	GCAGC	7 cut(s)	556, 652, 763, 1075, 1100, 2383, 2990
BstV2I	GAAGAC	2 cut(s)	1134, 1853
BstX2I	RGATCY	4 cut(s)	947, 1511, 1966, 2188
BstXI	CCANNNNNNTGG	1 cut(s)	1274
BstYI	RGATCY	4 cut(s)	947, 1511, 1966, 2188
BstZ17I	GTATAC	1 cut(s)	2726
Bsu15I	ATCGAT	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	2829
BsuI	GTATCC	1 cut(s)	3138
BsuRI	GGCC	8 cut(s)	71, 278, 725, 2030, 2323, 2351, 2405, 2606
BsuTUI	ATCGAT	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	828, 973, 1494, 1570
BtsI	GCAGTG	4 cut(s)	1938, 1980, 2854, 2942
BtsIMutI	CAGTG	9 cut(s)	206, 1422, 1938, 1980, 2029, 2365, 2854, 2942, 3025
Cac8I	GCNNGC	3 cut(s)	938, 1009, 2353
CaiI	CAGNNNCTG	1 cut(s)	2311
CciI	TCATGA	3 cut(s)	1396, 1893, 2884
CfoI	GCGC	2 cut(s)	2357, 2455
Cfr10I	RCCGGY	2 cut(s)	1245, 1405
ClaI	ATCGAT	1 cut(s)	199
CseI	GACGC	5 cut(s)	929, 1271, 1814, 1926, 2477
CspAI	ACCGGT	1 cut(s)	1405
DdeI	CTNAG	8 cut(s)	289, 393, 1922, 2076, 2416, 2829, 3056, 3062
DrdI	GACNNNNNNGTC	2 cut(s)	290, 3066
DriI	GACNNNNNGTC	1 cut(s)	3229
DseDI	GACNNNNNNGTC	2 cut(s)	290, 3066
EaeI	YGGCCR	2 cut(s)	2403, 2604
Eam1104I	CTCTTC	2 cut(s)	2427, 3104
Eam1105I	GACNNNNNGTC	1 cut(s)	3229
EarI	CTCTTC	2 cut(s)	2427, 3104
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	2165
Eco24I	GRGCYC	2 cut(s)	441, 2054
Eco47I	GGWCC	8 cut(s)	34, 562, 629, 1505, 1777, 2393, 3114, 3231
Eco47III	AGCGCT	1 cut(s)	2454
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	3 cut(s)	1091, 1716, 3001
Eco81I	CCTNAGG	1 cut(s)	2829
Eco88I	CYCGRG	2 cut(s)	2288, 2586
Eco91I	GGTNACC	2 cut(s)	501, 1568
EcoICRI	GAGCTC	1 cut(s)	439
EcoNI	CCTNNNNNAGG	2 cut(s)	50, 2432
EcoO109I	RGGNCCY	4 cut(s)	562, 724, 1505, 3231
EcoO65I	GGTNACC	2 cut(s)	501, 1568
EcoRII	CCWGG	5 cut(s)	727, 896, 1484, 1528, 1809
EcoT14I	CCWWGG	1 cut(s)	2165
EcoT22I	ATGCAT	2 cut(s)	78, 991
EcoT38I	GRGCYC	2 cut(s)	441, 2054
ErhI	CCWWGG	1 cut(s)	2165
FalI	AAGNNNNNCTT	2 cut(s)	1845, 1877
FaqI	GGGAC	1 cut(s)	2399
FbaI	TGATCA	1 cut(s)	2773
FblI	GTMKAC	4 cut(s)	2066, 2647, 2725, 2998
Fnu4HI	GCNGC	7 cut(s)	545, 666, 752, 1064, 1089, 2372, 2979
FokI	GGATG	4 cut(s)	835, 960, 1501, 1577
FriOI	GRGCYC	2 cut(s)	441, 2054
Fsp4HI	GCNGC	7 cut(s)	545, 666, 752, 1064, 1089, 2372, 2979
GlaI	GCGC	2 cut(s)	2356, 2454
GluI	GCNGC	7 cut(s)	545, 666, 752, 1064, 1089, 2372, 2979
GsuI	CTGGAG	4 cut(s)	162, 287, 750, 3271
HaeII	RGCGCY	2 cut(s)	2358, 2456
HaeIII	GGCC	8 cut(s)	71, 278, 725, 2030, 2323, 2351, 2405, 2606
HapII	CCGG	7 cut(s)	566, 820, 1246, 1406, 1562, 2932, 3095
HgaI	GACGC	5 cut(s)	929, 1271, 1814, 1926, 2477
HhaI	GCGC	2 cut(s)	2357, 2455
Hin1I	GRCGYC	3 cut(s)	1263, 1806, 1918
Hin6I	GCGC	2 cut(s)	2355, 2453
HinP1I	GCGC	2 cut(s)	2355, 2453
HincII	GTYRAC	4 cut(s)	1261, 2175, 2425, 2999
HindII	GTYRAC	4 cut(s)	1261, 2175, 2425, 2999
HindIII	AAGCTT	3 cut(s)	80, 479, 3255
HpaII	CCGG	7 cut(s)	566, 820, 1246, 1406, 1562, 2932, 3095
HphI	GGTGA	7 cut(s)	495, 974, 1028, 1757, 1826, 2389, 3233
HpyCH4III	ACNGT	7 cut(s)	611, 955, 1317, 2137, 2270, 2951, 2996
HpyCH4IV	ACGT	3 cut(s)	1093, 1440, 2971
HpyF10VI	GCNNNNNNNGC	6 cut(s)	445, 550, 1991, 2282, 2932, 3083
HpyF3I	CTNAG	8 cut(s)	289, 393, 1922, 2076, 2416, 2829, 3056, 3062
HpySE526I	ACGT	3 cut(s)	1093, 1440, 2971
Hsp92I	GRCGYC	3 cut(s)	1263, 1806, 1918
HspAI	GCGC	2 cut(s)	2355, 2453
Kpn2I	TCCGGA	1 cut(s)	1561
KpnI	GGTACC	1 cut(s)	867
Ksp22I	TGATCA	1 cut(s)	2773
Lsp1109I	GCAGC	7 cut(s)	556, 652, 763, 1075, 1100, 2383, 2990
LweI	GCATC	4 cut(s)	1513, 2003, 2899, 3034
MaeII	ACGT	3 cut(s)	1093, 1440, 2971
MboII	GAAGA	9 cut(s)	142, 164, 1139, 1486, 1760, 1853, 2444, 2797, 3121
MfeI	CAATTG	2 cut(s)	669, 2843
MflI	RGATCY	4 cut(s)	947, 1511, 1966, 2188
MhlI	GDGCHC	3 cut(s)	441, 1115, 2054
MlsI	TGGCCA	2 cut(s)	2405, 2606
MluI	ACGCGT	1 cut(s)	2469
MluNI	TGGCCA	2 cut(s)	2405, 2606
MlyI	GAGTC	6 cut(s)	511, 541, 1171, 1834, 1944, 2244
Mox20I	TGGCCA	2 cut(s)	2405, 2606
Mph1103I	ATGCAT	2 cut(s)	78, 991
MroI	TCCGGA	1 cut(s)	1561
MroXI	GAANNNNTTC	1 cut(s)	1672
MscI	TGGCCA	2 cut(s)	2405, 2606
MseI	TTAA	6 cut(s)	356, 525, 537, 1647, 2652, 3198
MslI	CAYNNNNRTG	5 cut(s)	962, 984, 1215, 1272, 2612
Msp20I	TGGCCA	2 cut(s)	2405, 2606
MspA1I	CMGCKG	1 cut(s)	2374
MspI	CCGG	7 cut(s)	566, 820, 1246, 1406, 1562, 2932, 3095
MspR9I	CCNGG	6 cut(s)	566, 729, 898, 1486, 1530, 1811
MunI	CAATTG	2 cut(s)	669, 2843
Mva1269I	GAATGC	2 cut(s)	2576, 2619
MvaI	CCWGG	5 cut(s)	729, 898, 1486, 1530, 1811
MvnI	CGCG	1 cut(s)	2471
MwoI	GCNNNNNNNGC	6 cut(s)	445, 550, 1991, 2282, 2932, 3083
NciI	CCSGG	1 cut(s)	566
NheI	GCTAGC	1 cut(s)	1007
NmeAIII	GCCGAG	2 cut(s)	1024, 1848
NmuCI	GTSAC	6 cut(s)	501, 955, 1870, 1936, 1952, 3221
NsiI	ATGCAT	2 cut(s)	78, 991
NspI	RCATGY	3 cut(s)	845, 940, 1332
PaeI	GCATGC	1 cut(s)	940
PagI	TCATGA	3 cut(s)	1396, 1893, 2884
PasI	CCCWGGG	1 cut(s)	1810
PciI	ACATGT	2 cut(s)	841, 1328
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	2576, 2619
PdmI	GAANNNNTTC	1 cut(s)	1672
PfeI	GAWTC	6 cut(s)	92, 574, 1207, 1842, 1890, 1976
PflMI	CCANNNNNTGG	2 cut(s)	2166, 3218
PinAI	ACCGGT	1 cut(s)	1405
PkrI	GCNGC	7 cut(s)	546, 667, 753, 1065, 1090, 2373, 2980
Ple19I	CGATCG	1 cut(s)	851
PleI	GAGTC	6 cut(s)	511, 540, 1170, 1833, 1943, 2244
PpsI	GAGTC	6 cut(s)	511, 540, 1170, 1833, 1943, 2244
PpuMI	RGGWCCY	3 cut(s)	562, 1505, 3231
PscI	ACATGT	2 cut(s)	841, 1328
PshAI	GACNNNNGTC	1 cut(s)	2391
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	2 cut(s)	321, 2520
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	3 cut(s)	562, 1505, 3231
Psp6I	CCWGG	5 cut(s)	727, 896, 1484, 1528, 1809
PspEI	GGTNACC	2 cut(s)	501, 1568
PspGI	CCWGG	5 cut(s)	727, 896, 1484, 1528, 1809
PspPPI	RGGWCCY	3 cut(s)	562, 1505, 3231
PstNI	CAGNNNCTG	1 cut(s)	2311
PsuI	RGATCY	4 cut(s)	947, 1511, 1966, 2188
PvuI	CGATCG	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	2374
RseI	CAYNNNNRTG	5 cut(s)	962, 984, 1215, 1272, 2612
SacI	GAGCTC	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	2997
SaqAI	TTAA	6 cut(s)	356, 525, 537, 1647, 2652, 3198
SatI	GCNGC	7 cut(s)	545, 666, 752, 1064, 1089, 2372, 2979
ScaI	AGTACT	2 cut(s)	119, 799
SchI	GAGTC	6 cut(s)	511, 541, 1171, 1834, 1944, 2244
ScrFI	CCNGG	6 cut(s)	566, 729, 898, 1486, 1530, 1811
SduI	GDGCHC	3 cut(s)	441, 1115, 2054
SfaNI	GCATC	4 cut(s)	1513, 2003, 2899, 3034
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	8 cut(s)	34, 562, 629, 1505, 1777, 2393, 3114, 3231
SmiMI	CAYNNNNRTG	5 cut(s)	962, 984, 1215, 1272, 2612
SmlI	CTYRAG	2 cut(s)	83, 1837
SmoI	CTYRAG	2 cut(s)	83, 1837
SphI	GCATGC	1 cut(s)	940
SsiI	CCGC	7 cut(s)	514, 2369, 2438, 2528, 2689, 2869, 3012
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	6 cut(s)	564, 727, 896, 1484, 1528, 1809
StyI	CCWWGG	1 cut(s)	2165
TaaI	ACNGT	7 cut(s)	611, 955, 1317, 2137, 2270, 2951, 2996
TaiI	ACGT	3 cut(s)	1096, 1443, 2974
TaqII	GACCGA	1 cut(s)	3131
TatI	WGTACW	7 cut(s)	117, 797, 1446, 1541, 2302, 3157, 3295
TfiI	GAWTC	6 cut(s)	92, 574, 1207, 1842, 1890, 1976
Tru1I	TTAA	6 cut(s)	356, 525, 537, 1647, 2652, 3198
Tru9I	TTAA	6 cut(s)	356, 525, 537, 1647, 2652, 3198
TscAI	CASTG	9 cut(s)	213, 1422, 1945, 1987, 2029, 2365, 2861, 2942, 3025
TseFI	GTSAC	6 cut(s)	501, 955, 1870, 1936, 1952, 3221
TseI	GCWGC	7 cut(s)	544, 665, 751, 1063, 1088, 2371, 2978
Tsp45I	GTSAC	6 cut(s)	501, 955, 1870, 1936, 1952, 3221
TspGWI	ACGGA	3 cut(s)	705, 1817, 2143
TspRI	CASTG	9 cut(s)	213, 1422, 1945, 1987, 2029, 2365, 2861, 2942, 3025
Van91I	CCANNNNNTGG	2 cut(s)	2166, 3218
VpaK11BI	GGWCC	8 cut(s)	34, 562, 629, 1505, 1777, 2393, 3114, 3231
VspI	ATTAAT	1 cut(s)	525
XagI	CCTNNNNNAGG	2 cut(s)	50, 2432
XapI	RAATTY	6 cut(s)	7, 185, 674, 1201, 1668, 2340
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	3 cut(s)	845, 940, 1332
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1074, 3173
XmiI	GTMKAC	4 cut(s)	2066, 2647, 2725, 2998
XmnI	GAANNNNTTC	1 cut(s)	1672
ZrmI	AGTACT	2 cut(s)	119, 799
Zsp2I	ATGCAT	2 cut(s)	78, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.