Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007811.1

Orthogroup ID

OG0008676

Physical Location & Seq

Genomic Coordinates Forward (+)

26 .. 744

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgctaaatagggagcttgccgctgctgttgtcacgatacccagcaaagatctgagcaatgaggaagctatggagaagggctgcaccaagtgttcaccagagcacggaatgtcttgcaactgggaagacagtagtatagtcatacttccaggcggcgtccatagctcaccaaacaaaggagagccttcaccattaattacccgttggaaatctggtggatcttgtgattgtggaggttgggatgttggttgtaaattgcgtgttctctcaaaccagaacaagtgccgtcagaattccaagacaaccacagcttctcctagttcagatcattttgaacttttcgctgagggggaagctcaggaaaacaaggcagtcttcagattggaaccagggaaagatggaacctactcgatcgaattcaatacgtcaatttctttgttgcaagcattattcatctgtgttgtcatatttagcagcagccagaagccatcagatatgtccgaagcaaaagtttctcacgaggcgactttgaatggaaatagtggaatccaggtgactgcgccatccaagtatgctcaaaatccacctcactccccagttgggagagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3527

Protein Analysis

203

Amino Acids

21.76

Weight (kDa)

5.96

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01030 AT5G01030 AT5G01030
fragaria_vesca	FvH4_6g12500 FvH4_6g12500
malus_domestica	MD04G1141700.v1.1 MD12G1156300.v1.1
prunus_persica	Prupe.6G267100_v2.0.a1
pyrus_communis	pycom04g12880 pycom12g14840
rosa_chinensis	RchiOBHm_Chr3g0464321
rosa_laevigata	RLG00000024708
rosa_multiflora	Rmu_sc0003074.1_g000030 Rmu_sc0007811.1_g000001 Rmu_sc0029720.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415810
rosa_rugosa	Rorug03G0071300 Rorug03G0071300 Rorug03G0071400
rosa_samantha	Rh3BG133500 Rh3CG135800 Rh3DG135000
rosa_wichuraiana	Rw3G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 153
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	292, 416
AcuI	CTGAAG	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	104, 176, 600
AgsI	TTSAA	3 cut(s)	335, 421, 532
AjnI	CCWGG	3 cut(s)	148, 388, 549
AluBI	AGCT	5 cut(s)	16, 68, 165, 311, 356
AluI	AGCT	5 cut(s)	16, 68, 165, 311, 356
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	226
ApeKI	GCWGC	4 cut(s)	23, 81, 474, 477
ApoI	RAATTY	2 cut(s)	292, 416
AseI	ATTAAT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	562
AsuHPI	GGTGA	4 cut(s)	87, 159, 180, 565
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	2 cut(s)	132, 367
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	10, 68, 486, 489
BccI	CCATC	3 cut(s)	392, 496, 571
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	3 cut(s)	150, 390, 551
BfaI	CTAG	2 cut(s)	318, 610
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	6 cut(s)	21, 24, 82, 154, 475, 478
BlsI	GCNGC	6 cut(s)	22, 25, 83, 155, 476, 479
Bme1390I	CCNGG	3 cut(s)	150, 390, 551
BmiI	GGNNCC	2 cut(s)	387, 403
BmrFI	CCNGG	3 cut(s)	150, 390, 551
BmrI	ACTGGG	2 cut(s)	130, 590
BmuI	ACTGGG	2 cut(s)	130, 590
BpiI	GAAGAC	2 cut(s)	132, 367
Bpu10I	CCTNAGC	2 cut(s)	345, 357
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 176, 600
Bse1I	ACTGG	2 cut(s)	125, 596
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	3 cut(s)	150, 390, 551
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	247, 563
BseLI	CCNNNNNNNGG	3 cut(s)	104, 176, 600
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	44, 336, 371
BseNI	ACTGG	2 cut(s)	125, 596
BseXI	GCAGC	4 cut(s)	10, 68, 486, 489
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	104, 176, 600
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	49, 218, 325, 411
BspACI	CCGC	2 cut(s)	21, 153
BspCNI	CTCAG	3 cut(s)	45, 337, 370
BspLI	GGNNCC	2 cut(s)	387, 403
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	125, 596
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	4 cut(s)	49, 218, 325, 411
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	3 cut(s)	150, 390, 551
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	18, 444
BstDEI	CTNAG	3 cut(s)	53, 345, 357
BstF5I	GGATG	2 cut(s)	247, 563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	4 cut(s)	52, 221, 328, 414
BstMBI	GATC	4 cut(s)	49, 218, 325, 411
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	3 cut(s)	150, 390, 551
BstSCI	CCNGG	3 cut(s)	148, 388, 549
BstV1I	GCAGC	4 cut(s)	10, 68, 486, 489
BstV2I	GAAGAC	2 cut(s)	132, 367
BstX2I	RGATCY	2 cut(s)	49, 218
BstYI	RGATCY	2 cut(s)	49, 218
BtsCI	GGATG	2 cut(s)	247, 563
Cac8I	GCNNGC	2 cut(s)	18, 444
CfoI	GCGC	1 cut(s)	562
CseI	GACGC	1 cut(s)	145
CviJI	RGCY	9 cut(s)	16, 68, 81, 165, 184, 311, 356, 480, 487
CviKI_1	RGCY	9 cut(s)	16, 68, 81, 165, 184, 311, 356, 480, 487
DdeI	CTNAG	3 cut(s)	53, 345, 357
DpnI	GATC	4 cut(s)	51, 220, 327, 413
DpnII	GATC	4 cut(s)	49, 218, 325, 411
DraIII	CACNNNGTG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	292, 416
EcoRII	CCWGG	3 cut(s)	148, 388, 549
FaiI	YATR	7 cut(s)	71, 137, 143, 162, 467, 497, 573
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
Fnu4HI	GCNGC	6 cut(s)	21, 24, 82, 154, 475, 478
FokI	GGATG	2 cut(s)	254, 550
Fsp4HI	GCNGC	6 cut(s)	21, 24, 82, 154, 475, 478
FspBI	CTAG	2 cut(s)	318, 610
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	6 cut(s)	21, 24, 82, 154, 475, 478
GsaI	CCCAGC	1 cut(s)	45
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	2 cut(s)	546, 606
HphI	GGTGA	4 cut(s)	87, 159, 180, 565
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	6 cut(s)	54, 291, 325, 380, 493, 502
Hpy188III	TCNNGA	3 cut(s)	34, 359, 518
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	70, 195
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	84, 117, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	3 cut(s)	53, 345, 357
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	4 cut(s)	49, 218, 325, 411
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	4 cut(s)	10, 68, 486, 489
MaeI	CTAG	2 cut(s)	318, 610
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	31, 553
MalI	GATC	4 cut(s)	51, 220, 327, 413
MboI	GATC	4 cut(s)	49, 218, 325, 411
MboII	GAAGA	2 cut(s)	137, 367
MflI	RGATCY	2 cut(s)	49, 218
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	195, 254, 292, 416, 429
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	55, 227, 340, 514, 597
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	150, 390, 551
MvaI	CCWGG	3 cut(s)	150, 390, 551
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	4 cut(s)	49, 218, 325, 411
NlaIV	GGNNCC	2 cut(s)	387, 403
NmuCI	GTSAC	2 cut(s)	31, 553
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	6 cut(s)	22, 25, 83, 155, 476, 479
Ple19I	CGATCG	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	148, 388, 549
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	148, 388, 549
PspN4I	GGNNCC	2 cut(s)	387, 403
PsuI	RGATCY	2 cut(s)	49, 218
PvuI	CGATCG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	6 cut(s)	21, 24, 82, 154, 475, 478
Sau3AI	GATC	4 cut(s)	49, 218, 325, 411
ScrFI	CCNGG	3 cut(s)	150, 390, 551
SduI	GDGCHC	1 cut(s)	105
Sse9I	AATT	5 cut(s)	195, 254, 292, 416, 429
SsiI	CCGC	2 cut(s)	21, 153
SspMI	CTAG	2 cut(s)	318, 610
StyD4I	CCNGG	3 cut(s)	148, 388, 549
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	410, 414
TasI	AATT	5 cut(s)	195, 254, 292, 416, 429
TauI	GCSGC	2 cut(s)	23, 156
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	31, 553
TseI	GCWGC	4 cut(s)	23, 81, 474, 477
Tsp45I	GTSAC	2 cut(s)	31, 553
TspDTI	ATGAA	1 cut(s)	442
TspGWI	ACGGA	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	2 cut(s)	292, 416
XspI	CTAG	2 cut(s)	318, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.