Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029720.1

Orthogroup ID

OG0008676

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 744

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029720.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

ggcaaatcaagaagcaccacaattcatgctaaatagggagcttgccgctgctgttgtcacgatacccagcaaagatctgaggaatgaggaagctatggagaagggctgcaccaagtgttcaccagagcacggattgtcttgcaactgggaagacagtagtatagtcatacttccaggcggcgtccatagctcaccaaacaaaggagagccttcaccattaattacccgttggaaatctggtggatcttgtgattgtggaggttgggatgttggttgtaaattgcgtgttctctcaaaccagaacaagtgccgtcagaattccaagacaaccacagcttctcctagttcagatcattttgaacttttcgctgagggggaagctcaggaaaacaaggcagtcttcagattggaaccagggaaagatggaacctacgcgatcgaattcaatacgtcaatttctttgttgcaagcattattcatctgtgttgtcatatttagcagcagccaaaagccatcagatatgtccaaagcaaaagtttctcacgaggcgactttgaatggaaatagtggaatccaggtgactgcgccatcaaagtatgctcaaaatccacctcactccccagttgggagagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3527

Protein Analysis

211

Amino Acids

22.68

Weight (kDa)

6.58

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01030 AT5G01030 AT5G01030
fragaria_vesca	FvH4_6g12500 FvH4_6g12500
malus_domestica	MD04G1141700.v1.1 MD12G1156300.v1.1
prunus_persica	Prupe.6G267100_v2.0.a1
pyrus_communis	pycom04g12880 pycom12g14840
rosa_chinensis	RchiOBHm_Chr3g0464321
rosa_laevigata	RLG00000024708
rosa_multiflora	Rmu_sc0003074.1_g000030 Rmu_sc0007811.1_g000001 Rmu_sc0029720.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415810
rosa_rugosa	Rorug03G0071300 Rorug03G0071300 Rorug03G0071400
rosa_samantha	Rh3BG133500 Rh3CG135800 Rh3DG135000
rosa_wichuraiana	Rw3G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	435
AciI	CCGC	2 cut(s)	46, 178
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	317, 441
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	129, 201, 625
AgsI	TTSAA	3 cut(s)	360, 446, 557
AjnI	CCWGG	3 cut(s)	173, 413, 574
AluBI	AGCT	5 cut(s)	41, 93, 190, 336, 381
AluI	AGCT	5 cut(s)	41, 93, 190, 336, 381
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	251
ApeKI	GCWGC	4 cut(s)	48, 106, 499, 502
ApoI	RAATTY	2 cut(s)	317, 441
AseI	ATTAAT	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	587
AsuHPI	GGTGA	4 cut(s)	112, 184, 205, 590
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	157, 392
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	4 cut(s)	35, 93, 511, 514
BccI	CCATC	3 cut(s)	417, 521, 596
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	3 cut(s)	175, 415, 576
BfaI	CTAG	2 cut(s)	343, 635
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	6 cut(s)	46, 49, 107, 179, 500, 503
BlsI	GCNGC	6 cut(s)	47, 50, 108, 180, 501, 504
Bme1390I	CCNGG	3 cut(s)	175, 415, 576
BmiI	GGNNCC	2 cut(s)	412, 428
BmrFI	CCNGG	3 cut(s)	175, 415, 576
BmrI	ACTGGG	2 cut(s)	155, 615
BmuI	ACTGGG	2 cut(s)	155, 615
BpiI	GAAGAC	2 cut(s)	157, 392
Bpu10I	CCTNAGC	2 cut(s)	370, 382
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 201, 625
Bse1I	ACTGG	2 cut(s)	150, 621
BseBI	CCWGG	3 cut(s)	175, 415, 576
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	3 cut(s)	129, 201, 625
BseMII	CTCAG	3 cut(s)	69, 361, 396
BseNI	ACTGG	2 cut(s)	150, 621
BseXI	GCAGC	4 cut(s)	35, 93, 511, 514
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	129, 201, 625
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	74, 243, 350, 436
BspACI	CCGC	2 cut(s)	46, 178
BspCNI	CTCAG	3 cut(s)	70, 362, 395
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	412, 428
BspPI	GGATC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	150, 621
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	74, 243, 350, 436
BssNI	GRCGYC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	3 cut(s)	175, 415, 576
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	43, 469
BstDEI	CTNAG	3 cut(s)	78, 370, 382
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	4 cut(s)	77, 246, 353, 439
BstMBI	GATC	4 cut(s)	74, 243, 350, 436
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	3 cut(s)	175, 415, 576
BstSCI	CCNGG	3 cut(s)	173, 413, 574
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	4 cut(s)	35, 93, 511, 514
BstV2I	GAAGAC	2 cut(s)	157, 392
BstX2I	RGATCY	2 cut(s)	74, 243
BstYI	RGATCY	2 cut(s)	74, 243
BtsCI	GGATG	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	43, 469
CfoI	GCGC	1 cut(s)	587
CseI	GACGC	1 cut(s)	170
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	9 cut(s)	41, 93, 106, 190, 209, 336, 381, 505, 512
CviKI_1	RGCY	9 cut(s)	41, 93, 106, 190, 209, 336, 381, 505, 512
DdeI	CTNAG	3 cut(s)	78, 370, 382
DpnI	GATC	4 cut(s)	76, 245, 352, 438
DpnII	GATC	4 cut(s)	74, 243, 350, 436
DraIII	CACNNNGTG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	386
EcoRI	GAATTC	2 cut(s)	317, 441
EcoRII	CCWGG	3 cut(s)	173, 413, 574
FaeI	CATG	1 cut(s)	29
FaiI	YATR	8 cut(s)	27, 96, 162, 168, 187, 492, 522, 598
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	6 cut(s)	46, 49, 107, 179, 500, 503
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	6 cut(s)	46, 49, 107, 179, 500, 503
FspBI	CTAG	2 cut(s)	343, 635
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	6 cut(s)	46, 49, 107, 179, 500, 503
GsaI	CCCAGC	1 cut(s)	70
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	571, 631
HphI	GGTGA	4 cut(s)	112, 184, 205, 590
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	5 cut(s)	79, 316, 350, 405, 518
Hpy188III	TCNNGA	4 cut(s)	9, 59, 384, 543
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	95, 220
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	109, 142, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	3 cut(s)	78, 370, 382
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	74, 243, 350, 436
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	4 cut(s)	35, 93, 511, 514
MaeI	CTAG	2 cut(s)	343, 635
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	56, 578
MalI	GATC	4 cut(s)	76, 245, 352, 438
MboI	GATC	4 cut(s)	74, 243, 350, 436
MboII	GAAGA	2 cut(s)	162, 392
MflI	RGATCY	2 cut(s)	74, 243
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	6 cut(s)	21, 220, 279, 317, 441, 454
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	73, 80, 252, 365, 539, 622
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	48
MspR9I	CCNGG	3 cut(s)	175, 415, 576
MvaI	CCWGG	3 cut(s)	175, 415, 576
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	4 cut(s)	74, 243, 350, 436
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	412, 428
NmuCI	GTSAC	2 cut(s)	56, 578
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	6 cut(s)	47, 50, 108, 180, 501, 504
Ple19I	CGATCG	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	219
Psp6I	CCWGG	3 cut(s)	173, 413, 574
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	3 cut(s)	173, 413, 574
PspN4I	GGNNCC	2 cut(s)	412, 428
PsuI	RGATCY	2 cut(s)	74, 243
PvuI	CGATCG	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	6 cut(s)	46, 49, 107, 179, 500, 503
Sau3AI	GATC	4 cut(s)	74, 243, 350, 436
ScrFI	CCNGG	3 cut(s)	175, 415, 576
SduI	GDGCHC	1 cut(s)	130
Sse9I	AATT	6 cut(s)	21, 220, 279, 317, 441, 454
SsiI	CCGC	2 cut(s)	46, 178
SspMI	CTAG	2 cut(s)	343, 635
StyD4I	CCNGG	3 cut(s)	173, 413, 574
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	439
TasI	AATT	6 cut(s)	21, 220, 279, 317, 441, 454
TauI	GCSGC	2 cut(s)	48, 181
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	56, 578
TseI	GCWGC	4 cut(s)	48, 106, 499, 502
Tsp45I	GTSAC	2 cut(s)	56, 578
TspDTI	ATGAA	2 cut(s)	14, 467
TspGWI	ACGGA	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	2 cut(s)	317, 441
XspI	CTAG	2 cut(s)	343, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.