Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008676

Physical Location & Seq

Genomic Coordinates Forward (+)

5699736 .. 5703303

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0071400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCGAACCGCACGGACCCCTCGGCGAAGAACATAAGGGGCACGAACCCCCAGAACCTGATCGAGAAGATCGTACGGACGAAGATATACAACAACACCTATTGGAAGGAGCAGTGCTTCGGATTGACGGCGGAGACGCTGGTGGACAAGGCCATGGAGCTCGACCACATCGGCGGGACCTTTGGAGGTAACCGGAAGCCCACGCCGTTTATGTGCCTCGTCATGAAGATGCTTCAGATCCAACCGGAGAAGGAAATCGTCATCGAGTTCATTAAGAACGACGACTACAAATATGTTCGGGTGCTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCATTGACTCATGTGGATGAGCTTATTGATGAACTTCTGACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGATGGACTCTTGAATCACTTGATTTGTTGGAACCTAGAAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAAGAGAAAGAGGAGAATGATCAGCTTAATGGATTGGATGATGAAGTCCATGATAAGGAGTATTACCGTGGCCGAAGTCCTGAAAGGGAAAGAGACAGGGATAGAAGACGTGACAGGGACCGATACAGAGATCGTGATTATGACAGAGAATATGATAGGGATAGAGACTACGAGAGAGAACGTGGACGTGGGAGAGAAAGAGATAGGAACAGAGACAGGGATAGGGACCGGGACCGATATAGACTGAGAGATGAAAAGGATTATGGCCGTGATAGGGATCGGGATAGGGAGTGGGATGGTAGGGAGCGTGAGAGGCGGGATAGGGATCGTGGTAGGAGGAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAGGGAGCACAAGGATCGTGAGGGTGGGGATCACCGCAAGAGACATGCCCGCAGCATCAGTCCTAGGAGGCGAGATGGGCCTGATGATAGCACTCGTGAGGAGCCGAGGAAGAAGAAAGAGAAGAAGGAGAAGAAGGCTGATGGTACAGACCATCCTGATCCTGAGATTGCTGAAGCCAATAGGCTCCGAGCATCTCTTGGTTTGAAGCCCCTTAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3527

Protein Analysis

387

Amino Acids

46.92

Weight (kDa)

8.92

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	10 - 173	1.1e-67	PRP38 family
PRP38_assoc	PF12871	179 - 270	3.4e-08	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01030 AT5G01030 AT5G01030
fragaria_vesca	FvH4_6g12500 FvH4_6g12500
malus_domestica	MD04G1141700.v1.1 MD12G1156300.v1.1
prunus_persica	Prupe.6G267100_v2.0.a1
pyrus_communis	pycom04g12880 pycom12g14840
rosa_chinensis	RchiOBHm_Chr3g0464321
rosa_laevigata	RLG00000024708
rosa_multiflora	Rmu_sc0003074.1_g000030 Rmu_sc0007811.1_g000001 Rmu_sc0029720.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415810
rosa_rugosa	Rorug03G0071300 Rorug03G0071300 Rorug03G0071400
rosa_samantha	Rh3BG133500 Rh3CG135800 Rh3DG135000
rosa_wichuraiana	Rw3G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	6 cut(s)	10, 131, 174, 889, 976, 991
AclWI	GGATC	6 cut(s)	232, 858, 906, 963, 978, 1094
AcoI	YGGCCR	2 cut(s)	643, 838
AcuI	CTGAAG	2 cut(s)	218, 1134
AfaI	GTAC	4 cut(s)	75, 356, 371, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	628, 847
AgsI	TTSAA	3 cut(s)	515, 924, 1147
AjiI	CACGTC	2 cut(s)	683, 761
AluBI	AGCT	3 cut(s)	160, 439, 598
AluI	AGCT	3 cut(s)	160, 439, 598
Alw21I	GWGCWC	2 cut(s)	162, 951
Alw26I	GTCTC	5 cut(s)	128, 660, 732, 780, 976
AlwI	GGATC	6 cut(s)	232, 858, 906, 963, 978, 1094
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	4 cut(s)	150, 643, 838, 1019
ApeKI	GCWGC	2 cut(s)	333, 993
AspA2I	CCTAGG	1 cut(s)	1004
AspS9I	GGNCC	6 cut(s)	16, 177, 691, 799, 805, 1019
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	1 cut(s)	965
AvaII	GGWCC	5 cut(s)	16, 177, 691, 799, 805
AvrII	CCTAGG	1 cut(s)	1004
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	4 cut(s)	307, 330, 340, 363
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	1035
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	2 cut(s)	162, 951
BbvI	GCAGC	2 cut(s)	345, 1005
BccI	CCATC	6 cut(s)	401, 498, 863, 1010, 1076, 1101
BceAI	ACGGC	3 cut(s)	144, 190, 825
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	5 cut(s)	128, 660, 732, 780, 976
BfaI	CTAG	3 cut(s)	359, 537, 1005
BisI	GCNGC	2 cut(s)	334, 994
BlnI	CCTAGG	1 cut(s)	1004
BlsI	GCNGC	2 cut(s)	335, 995
Bme1390I	CCNGG	1 cut(s)	803
Bme18I	GGWCC	5 cut(s)	16, 177, 691, 799, 805
BmgBI	CACGTC	2 cut(s)	683, 761
BmgT120I	GGNCC	6 cut(s)	16, 177, 691, 799, 805, 1019
BmrFI	CCNGG	1 cut(s)	803
BmsI	GCATC	3 cut(s)	219, 1005, 1142
BpiI	GAAGAC	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	803
BsaBI	GATNNNNATC	2 cut(s)	849, 897
BsaJI	CCNNGG	5 cut(s)	21, 153, 640, 1004, 1046
BsaWI	WCCGGW	2 cut(s)	192, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 847
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	849, 897
BseDI	CCNNGG	5 cut(s)	21, 153, 640, 1004, 1046
BseGI	GGATG	4 cut(s)	439, 616, 874, 1093
BseJI	GATNNNNATC	2 cut(s)	849, 897
BseLI	CCNNNNNNNGG	2 cut(s)	628, 847
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	809, 1095
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	7 cut(s)	569, 581, 584, 599, 925, 928, 1055
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	345, 1005
BshFI	GGCC	4 cut(s)	152, 645, 840, 1021
BsiHKAI	GWGCWC	2 cut(s)	162, 951
BsiSI	CCGG	3 cut(s)	193, 245, 802
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	4 cut(s)	190, 704, 812, 818
BslI	CCNNNNNNNGG	2 cut(s)	628, 847
BsmAI	GTCTC	5 cut(s)	128, 660, 732, 780, 976
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	4 cut(s)	190, 704, 812, 818
BsnI	GGCC	4 cut(s)	152, 645, 840, 1021
Bsp1286I	GDGCHC	3 cut(s)	44, 162, 951
Bsp1407I	TGTACA	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	6 cut(s)	10, 131, 174, 889, 976, 991
BspANI	GGCC	4 cut(s)	152, 645, 840, 1021
BspCNI	CTCAG	2 cut(s)	810, 1096
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	6 cut(s)	232, 858, 906, 963, 978, 1094
BsrDI	GCAATG	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	5 cut(s)	21, 153, 640, 1004, 1046
BssSI	CACGAG	1 cut(s)	1035
BssT1I	CCWWGG	2 cut(s)	153, 1004
Bst2BI	CACGAG	1 cut(s)	1035
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	570
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	2 cut(s)	818, 1104
BstDSI	CCRYGG	2 cut(s)	153, 640
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	439, 616, 874, 1093
BstMAI	GTCTC	5 cut(s)	128, 660, 732, 780, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	886, 1018
BstNSI	RCATGY	1 cut(s)	989
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	345, 1005
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	152, 645, 840, 1021
BtgI	CCRYGG	2 cut(s)	153, 640
BtrI	CACGTC	2 cut(s)	683, 761
BtsCI	GGATG	4 cut(s)	439, 616, 874, 1093
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	991
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	6 cut(s)	16, 177, 691, 799, 805, 1019
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	74, 355, 370, 1086
CviAII	CATG	7 cut(s)	154, 223, 428, 471, 484, 623, 986
CviQI	GTAC	4 cut(s)	74, 355, 370, 1086
DdeI	CTNAG	2 cut(s)	818, 1104
EaeI	YGGCCR	2 cut(s)	643, 838
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	153, 1004
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	5 cut(s)	16, 177, 691, 799, 805
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	218, 1134
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	153, 1004
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	153, 1004
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	7 cut(s)	157, 226, 431, 474, 487, 626, 989
FaqI	GGGAC	4 cut(s)	190, 704, 812, 818
FatI	CATG	7 cut(s)	153, 222, 427, 470, 483, 622, 985
FauI	CCCGC	3 cut(s)	167, 882, 998
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	334, 994
FokI	GGATG	4 cut(s)	446, 623, 881, 1080
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	334, 994
FspBI	CTAG	3 cut(s)	359, 537, 1005
GluI	GCNGC	2 cut(s)	334, 994
HaeIII	GGCC	4 cut(s)	152, 645, 840, 1021
HapII	CCGG	3 cut(s)	193, 245, 802
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	7 cut(s)	157, 226, 431, 474, 487, 626, 989
HinfI	GANTC	4 cut(s)	424, 492, 508, 515
HpaII	CCGG	3 cut(s)	193, 245, 802
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	3 cut(s)	145, 349, 758
Hpy188I	TCNGA	6 cut(s)	122, 237, 384, 456, 1130, 1163
Hpy8I	GTNNAC	3 cut(s)	145, 349, 758
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	100, 244, 1060, 1069
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	4 cut(s)	412, 682, 754, 760
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	886, 1018
HpyF3I	CTNAG	2 cut(s)	818, 1104
HpySE526I	ACGT	4 cut(s)	412, 682, 754, 760
Hsp92II	CATG	7 cut(s)	157, 226, 431, 474, 487, 626, 989
Ksp22I	TGATCA	1 cut(s)	592
LmnI	GCTCC	8 cut(s)	109, 157, 877, 915, 927, 946, 1042, 1131
Lsp1109I	GCAGC	2 cut(s)	345, 1005
LweI	GCATC	3 cut(s)	219, 1005, 1142
MaeI	CTAG	3 cut(s)	359, 537, 1005
MaeII	ACGT	4 cut(s)	412, 682, 754, 760
MaeIII	GTNAC	2 cut(s)	188, 683
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	44, 162, 951
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	2 cut(s)	418, 502
MmeI	TCCRAC	2 cut(s)	265, 510
MseI	TTAA	3 cut(s)	273, 600, 1155
MslI	CAYNNNNRTG	3 cut(s)	227, 432, 482
MspI	CCGG	3 cut(s)	193, 245, 802
MspR9I	CCNGG	1 cut(s)	803
MwoI	GCNNNNNNNGC	2 cut(s)	886, 1018
NciI	CCSGG	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	7 cut(s)	157, 226, 431, 474, 487, 626, 989
NmeAIII	GCCGAG	1 cut(s)	1071
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	1 cut(s)	989
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	492, 515
Pfl23II	CGTACG	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	335, 995
PleI	GAGTC	2 cut(s)	418, 502
PpsI	GAGTC	2 cut(s)	418, 502
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	188
PspLI	CGTACG	1 cut(s)	73
PspPI	GGNCC	6 cut(s)	16, 177, 691, 799, 805, 1019
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	4 cut(s)	75, 356, 371, 1087
RsaNI	GTAC	4 cut(s)	74, 355, 370, 1086
RseI	CAYNNNNRTG	3 cut(s)	227, 432, 482
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	273, 600, 1155
SatI	GCNGC	2 cut(s)	334, 994
Sau96I	GGNCC	6 cut(s)	16, 177, 691, 799, 805, 1019
SchI	GAGTC	2 cut(s)	418, 502
ScrFI	CCNGG	1 cut(s)	803
SduI	GDGCHC	3 cut(s)	44, 162, 951
SfaNI	GCATC	3 cut(s)	219, 1005, 1142
SinI	GGWCC	5 cut(s)	16, 177, 691, 799, 805
SmiMI	CAYNNNNRTG	3 cut(s)	227, 432, 482
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	6 cut(s)	10, 131, 174, 889, 976, 991
SspMI	CTAG	3 cut(s)	359, 537, 1005
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	801
StyI	CCWWGG	2 cut(s)	153, 1004
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	4 cut(s)	415, 685, 757, 763
TaqI	TCGA	3 cut(s)	63, 162, 264
TaqII	GACCGA	2 cut(s)	708, 822
TasI	AATT	1 cut(s)	398
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	492, 515
Tru1I	TTAA	3 cut(s)	273, 600, 1155
Tru9I	TTAA	3 cut(s)	273, 600, 1155
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	2 cut(s)	333, 993
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	5 cut(s)	239, 259, 462, 630, 840
TspGWI	ACGGA	2 cut(s)	29, 91
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	5 cut(s)	16, 177, 691, 799, 805
XceI	RCATGY	1 cut(s)	989
XmaJI	CCTAGG	1 cut(s)	1004
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	3 cut(s)	359, 537, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.