Domain of unknown function (DUF3527)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01030 AT5G01030 AT5G01030 |
| fragaria_vesca | FvH4_6g12500 FvH4_6g12500 |
| malus_domestica | MD04G1141700.v1.1 MD12G1156300.v1.1 |
| prunus_persica | Prupe.6G267100_v2.0.a1 |
| pyrus_communis | pycom04g12880 pycom12g14840 |
| rosa_chinensis | RchiOBHm_Chr3g0464321 |
| rosa_laevigata | RLG00000024708 |
| rosa_multiflora | Rmu_sc0003074.1_g000030 Rmu_sc0007811.1_g000001 Rmu_sc0029720.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00415810 |
| rosa_rugosa | Rorug03G0071300 Rorug03G0071300 Rorug03G0071400 |
| rosa_samantha | Rh3BG133500 Rh3CG135800 Rh3DG135000 |
| rosa_wichuraiana | Rw3G010940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1182 |
| AarI | CACCTGC | 1 cut(s) | 461 |
| Acc36I | ACCTGC | 2 cut(s) | 328, 461 |
| AccB1I | GGYRCC | 2 cut(s) | 1546, 2884 |
| AccI | GTMKAC | 1 cut(s) | 652 |
| AccII | CGCG | 2 cut(s) | 298, 790 |
| AccIII | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| AclI | AACGTT | 1 cut(s) | 156 |
| AclWI | GGATC | 5 cut(s) | 243, 739, 1543, 1725, 1878 |
| AcoI | YGGCCR | 2 cut(s) | 53, 260 |
| AcsI | RAATTY | 6 cut(s) | 46, 1195, 1649, 2212, 2915, 3040 |
| AcuI | CTGAAG | 7 cut(s) | 345, 987, 1494, 1506, 1768, 2040, 2120 |
| AfaI | GTAC | 4 cut(s) | 340, 1656, 1933, 2629 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 258, 599, 619, 720, 829, 903, 927, 2672, 2821 |
| AflII | CTTAAG | 1 cut(s) | 2398 |
| AflIII | ACRYGT | 4 cut(s) | 394, 561, 2482, 2922 |
| AjiI | CACGTC | 1 cut(s) | 2925 |
| AjnI | CCWGG | 5 cut(s) | 926, 2644, 2887, 3030, 3063 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 711, 743, 1332, 1364 |
| Alw21I | GWGCWC | 3 cut(s) | 1159, 2680, 2857 |
| Alw26I | GTCTC | 4 cut(s) | 174, 813, 936, 1425 |
| AlwI | GGATC | 5 cut(s) | 243, 739, 1543, 1725, 1878 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1409, 1877, 2098 |
| Ama87I | CYCGRG | 1 cut(s) | 1426 |
| Aor13HI | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| AoxI | GGCC | 6 cut(s) | 24, 53, 260, 820, 2867, 3074 |
| ApoI | RAATTY | 6 cut(s) | 46, 1195, 1649, 2212, 2915, 3040 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 831, 863 |
| AseI | ATTAAT | 2 cut(s) | 2073, 2265 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 982, 3026 |
| AspA2I | CCTAGG | 1 cut(s) | 2516 |
| AspLEI | GCGC | 5 cut(s) | 294, 372, 864, 1608, 2582 |
| AspS9I | GGNCC | 5 cut(s) | 487, 1055, 1357, 1874, 3074 |
| AsuC2I | CCSGG | 1 cut(s) | 576 |
| AsuHPI | GGTGA | 5 cut(s) | 485, 2457, 2655, 2676, 3079 |
| AsuNHI | GCTAGC | 1 cut(s) | 1735 |
| AvaI | CYCGRG | 1 cut(s) | 1426 |
| AvaII | GGWCC | 4 cut(s) | 487, 1055, 1357, 1874 |
| AvrII | CCTAGG | 1 cut(s) | 2516 |
| BaeGI | GKGCMC | 1 cut(s) | 1076 |
| BanI | GGYRCC | 2 cut(s) | 1546, 2884 |
| BanII | GRGCYC | 3 cut(s) | 8, 1159, 2857 |
| BbsI | GAAGAC | 1 cut(s) | 492 |
| Bbv12I | GWGCWC | 3 cut(s) | 1159, 2680, 2857 |
| BbvCI | CCTCAGC | 2 cut(s) | 2106, 2844 |
| BccI | CCATC | 8 cut(s) | 470, 850, 1076, 1168, 1330, 1444, 2891, 2992 |
| BceAI | ACGGC | 4 cut(s) | 40, 275, 1811, 2486 |
| BciT130I | CCWGG | 5 cut(s) | 928, 2646, 2889, 3032, 3065 |
| BciVI | GTATCC | 1 cut(s) | 2818 |
| BclI | TGATCA | 1 cut(s) | 1129 |
| BcnI | CCSGG | 1 cut(s) | 576 |
| BcoDI | GTCTC | 4 cut(s) | 174, 813, 936, 1425 |
| BfmI | CTRYAG | 4 cut(s) | 281, 1296, 1515, 2631 |
| BfoI | RGCGCY | 2 cut(s) | 295, 373 |
| BfrI | CTTAAG | 1 cut(s) | 2398 |
| BfuAI | ACCTGC | 2 cut(s) | 328, 461 |
| BfuI | GTATCC | 1 cut(s) | 2818 |
| BglII | AGATCT | 2 cut(s) | 2455, 2989 |
| BlnI | CCTAGG | 1 cut(s) | 2516 |
| BlpI | GCTNAGC | 1 cut(s) | 774 |
| BmcAI | AGTACT | 2 cut(s) | 1933, 2629 |
| Bme1390I | CCNGG | 6 cut(s) | 576, 928, 2646, 2889, 3032, 3065 |
| Bme18I | GGWCC | 4 cut(s) | 487, 1055, 1357, 1874 |
| BmeT110I | CYCGRG | 1 cut(s) | 1426 |
| BmgBI | CACGTC | 1 cut(s) | 2925 |
| BmgT120I | GGNCC | 5 cut(s) | 487, 1055, 1357, 1874, 3074 |
| BmiI | GGNNCC | 3 cut(s) | 1548, 2886, 3036 |
| BmrFI | CCNGG | 6 cut(s) | 576, 928, 2646, 2889, 3032, 3065 |
| BmsI | GCATC | 7 cut(s) | 457, 520, 948, 1391, 1601, 2120, 2135 |
| BmtI | GCTAGC | 1 cut(s) | 1739 |
| BoxI | GACNNNNGTC | 1 cut(s) | 126 |
| BpiI | GAAGAC | 1 cut(s) | 492 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 27, 767, 799 |
| BpmI | CTGGAG | 1 cut(s) | 1346 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2106, 2844, 2856 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 774 |
| BpuEI | CTTGAG | 1 cut(s) | 2548 |
| BpuMI | CCSGG | 1 cut(s) | 576 |
| BsaI | GGTCTC | 1 cut(s) | 936 |
| BsaJI | CCNNGG | 7 cut(s) | 39, 714, 926, 1443, 2516, 2595, 2888 |
| BsaWI | WCCGGW | 3 cut(s) | 1351, 1886, 2821 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1617, 1647 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 258, 599, 619, 720, 829, 903, 927, 2672, 2821 |
| Bse118I | RCCGGY | 2 cut(s) | 1773, 3076 |
| Bse1I | ACTGG | 3 cut(s) | 378, 424, 2242 |
| Bse3DI | GCAATG | 1 cut(s) | 766 |
| BseAI | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| BseBI | CCWGG | 5 cut(s) | 928, 2646, 2889, 3032, 3065 |
| BseDI | CCNNGG | 7 cut(s) | 39, 714, 926, 1443, 2516, 2595, 2888 |
| BseGI | GGATG | 9 cut(s) | 710, 1087, 1396, 2236, 2301, 2591, 2743, 2798, 2902 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 258, 599, 619, 720, 829, 903, 927, 2672, 2821 |
| BseMI | GCAATG | 1 cut(s) | 766 |
| BseMII | CTCAG | 7 cut(s) | 128, 765, 963, 1224, 2097, 2835, 2870 |
| BseNI | ACTGG | 3 cut(s) | 378, 424, 2242 |
| BseRI | GAGGAG | 4 cut(s) | 175, 192, 615, 2861 |
| BseSI | GKGCMC | 1 cut(s) | 1076 |
| BseX3I | CGGCCG | 2 cut(s) | 53, 260 |
| BseYI | CCCAGC | 3 cut(s) | 1594, 2616, 2733 |
| BsgI | GTGCAG | 2 cut(s) | 386, 1596 |
| Bsh1236I | CGCG | 2 cut(s) | 298, 790 |
| Bsh1285I | CGRYCG | 3 cut(s) | 56, 64, 263 |
| BshFI | GGCC | 6 cut(s) | 26, 55, 262, 822, 2869, 3076 |
| BshNI | GGYRCC | 2 cut(s) | 1546, 2884 |
| BsiEI | CGRYCG | 3 cut(s) | 56, 64, 263 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1159, 2680, 2857 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1426 |
| BsiSI | CCGG | 7 cut(s) | 212, 576, 1352, 1774, 1887, 2822, 3077 |
| BslFI | GGGAC | 4 cut(s) | 778, 1577, 2045, 3091 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 258, 599, 619, 720, 829, 903, 927, 2672, 2821 |
| BsmAI | GTCTC | 4 cut(s) | 174, 813, 936, 1425 |
| BsmBI | CGTCTC | 1 cut(s) | 813 |
| BsmFI | GGGAC | 4 cut(s) | 778, 1577, 2045, 3091 |
| BsmI | GAATGC | 3 cut(s) | 197, 898, 1021 |
| BsnI | GGCC | 6 cut(s) | 26, 55, 262, 822, 2869, 3076 |
| Bso31I | GGTCTC | 1 cut(s) | 936 |
| BsoBI | CYCGRG | 1 cut(s) | 1426 |
| Bsp1286I | GDGCHC | 5 cut(s) | 8, 1076, 1159, 2680, 2857 |
| Bsp13I | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| Bsp1407I | TGTACA | 1 cut(s) | 1654 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 774 |
| BspANI | GGCC | 6 cut(s) | 26, 55, 262, 822, 2869, 3076 |
| BspCNI | CTCAG | 7 cut(s) | 127, 766, 962, 1225, 2098, 2836, 2869 |
| BspEI | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| BspFNI | CGCG | 2 cut(s) | 298, 790 |
| BspLI | GGNNCC | 3 cut(s) | 1548, 2886, 3036 |
| BspMAI | CTGCAG | 1 cut(s) | 1300 |
| BspMI | ACCTGC | 2 cut(s) | 328, 461 |
| BspOI | GCTAGC | 1 cut(s) | 1739 |
| BspPI | GGATC | 5 cut(s) | 243, 739, 1543, 1725, 1878 |
| BspT107I | GGYRCC | 2 cut(s) | 1546, 2884 |
| BspTI | CTTAAG | 1 cut(s) | 2398 |
| BspTNI | GGTCTC | 1 cut(s) | 936 |
| BsrDI | GCAATG | 1 cut(s) | 766 |
| BsrFI | RCCGGY | 2 cut(s) | 1773, 3076 |
| BsrGI | TGTACA | 1 cut(s) | 1654 |
| BsrI | ACTGG | 3 cut(s) | 378, 424, 2242 |
| BssAI | RCCGGY | 2 cut(s) | 1773, 3076 |
| BssECI | CCNNGG | 7 cut(s) | 39, 714, 926, 1443, 2516, 2595, 2888 |
| BssT1I | CCWWGG | 4 cut(s) | 39, 714, 1443, 2516 |
| Bst2UI | CCWGG | 5 cut(s) | 928, 2646, 2889, 3032, 3065 |
| Bst4CI | ACNGT | 8 cut(s) | 143, 149, 1309, 1568, 1667, 1864, 2192, 2699 |
| Bst6I | CTCTTC | 1 cut(s) | 790 |
| BstAFI | CTTAAG | 1 cut(s) | 2398 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3086 |
| BstAUI | TGTACA | 1 cut(s) | 1654 |
| BstC8I | GCNNGC | 7 cut(s) | 197, 240, 244, 296, 1737, 2493, 3078 |
| BstDEI | CTNAG | 8 cut(s) | 114, 774, 949, 1233, 1789, 2106, 2844, 2856 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 597, 718, 827, 925 |
| BstF5I | GGATG | 9 cut(s) | 710, 1087, 1396, 2236, 2301, 2591, 2743, 2798, 2902 |
| BstFNI | CGCG | 2 cut(s) | 298, 790 |
| BstH2I | RGCGCY | 2 cut(s) | 295, 373 |
| BstHHI | GCGC | 5 cut(s) | 294, 372, 864, 1608, 2582 |
| BstMAI | GTCTC | 4 cut(s) | 174, 813, 936, 1425 |
| BstMCI | CGRYCG | 3 cut(s) | 56, 64, 263 |
| BstNI | CCWGG | 5 cut(s) | 928, 2646, 2889, 3032, 3065 |
| BstNSI | RCATGY | 5 cut(s) | 398, 565, 1606, 2486, 2811 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 126 |
| BstSCI | CCNGG | 6 cut(s) | 574, 926, 2644, 2887, 3030, 3063 |
| BstSFI | CTRYAG | 4 cut(s) | 281, 1296, 1515, 2631 |
| BstSLI | GKGCMC | 1 cut(s) | 1076 |
| BstUI | CGCG | 2 cut(s) | 298, 790 |
| BstV2I | GAAGAC | 1 cut(s) | 492 |
| BstX2I | RGATCY | 4 cut(s) | 248, 1883, 2455, 2989 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1450 |
| BstYI | RGATCY | 4 cut(s) | 248, 1883, 2455, 2989 |
| BstZI | CGGCCG | 2 cut(s) | 53, 260 |
| BsuI | GTATCC | 1 cut(s) | 2818 |
| BsuRI | GGCC | 6 cut(s) | 26, 55, 262, 822, 2869, 3076 |
| BtgZI | GCGATG | 1 cut(s) | 1146 |
| BtrI | CACGTC | 1 cut(s) | 2925 |
| BtsCI | GGATG | 9 cut(s) | 710, 1087, 1396, 2236, 2301, 2591, 2743, 2798, 2902 |
| BtsI | GCAGTG | 1 cut(s) | 1285 |
| BtsIMutI | CAGTG | 3 cut(s) | 148, 154, 1285 |
| BveI | ACCTGC | 2 cut(s) | 328, 461 |
| Cac8I | GCNNGC | 7 cut(s) | 197, 240, 244, 296, 1737, 2493, 3078 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1409, 1877, 2098 |
| CfoI | GCGC | 5 cut(s) | 294, 372, 864, 1608, 2582 |
| Cfr10I | RCCGGY | 2 cut(s) | 1773, 3076 |
| Cfr13I | GGNCC | 5 cut(s) | 487, 1055, 1357, 1874, 3074 |
| CseI | GACGC | 1 cut(s) | 2461 |
| Csp6I | GTAC | 4 cut(s) | 339, 1655, 1932, 2628 |
| CviQI | GTAC | 4 cut(s) | 339, 1655, 1932, 2628 |
| DdeI | CTNAG | 8 cut(s) | 114, 774, 949, 1233, 1789, 2106, 2844, 2856 |
| DraI | TTTAAA | 1 cut(s) | 1986 |
| EaeI | YGGCCR | 2 cut(s) | 53, 260 |
| EagI | CGGCCG | 2 cut(s) | 53, 260 |
| Eam1104I | CTCTTC | 1 cut(s) | 790 |
| EarI | CTCTTC | 1 cut(s) | 790 |
| EciI | GGCGGA | 2 cut(s) | 195, 230 |
| Ecl136II | GAGCTC | 2 cut(s) | 1157, 2855 |
| EclXI | CGGCCG | 2 cut(s) | 53, 260 |
| Eco130I | CCWWGG | 4 cut(s) | 39, 714, 1443, 2516 |
| Eco24I | GRGCYC | 3 cut(s) | 8, 1159, 2857 |
| Eco31I | GGTCTC | 1 cut(s) | 936 |
| Eco32I | GATATC | 3 cut(s) | 918, 1111, 2602 |
| Eco47I | GGWCC | 4 cut(s) | 487, 1055, 1357, 1874 |
| Eco52I | CGGCCG | 2 cut(s) | 53, 260 |
| Eco53kI | GAGCTC | 2 cut(s) | 1157, 2855 |
| Eco57I | CTGAAG | 7 cut(s) | 345, 987, 1494, 1506, 1768, 2040, 2120 |
| Eco88I | CYCGRG | 1 cut(s) | 1426 |
| EcoICRI | GAGCTC | 2 cut(s) | 1157, 2855 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 597, 718, 827, 925 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1357, 1874 |
| EcoRI | GAATTC | 2 cut(s) | 1195, 2915 |
| EcoRII | CCWGG | 5 cut(s) | 926, 2644, 2887, 3030, 3063 |
| EcoRV | GATATC | 3 cut(s) | 918, 1111, 2602 |
| EcoT14I | CCWWGG | 4 cut(s) | 39, 714, 1443, 2516 |
| EcoT38I | GRGCYC | 3 cut(s) | 8, 1159, 2857 |
| ErhI | CCWWGG | 4 cut(s) | 39, 714, 1443, 2516 |
| Esp3I | CGTCTC | 1 cut(s) | 813 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 905, 937, 1406, 1438, 2219, 2251 |
| FaqI | GGGAC | 4 cut(s) | 778, 1577, 2045, 3091 |
| FauI | CCCGC | 1 cut(s) | 698 |
| FbaI | TGATCA | 1 cut(s) | 1129 |
| FblI | GTMKAC | 1 cut(s) | 652 |
| FokI | GGATG | 9 cut(s) | 697, 1094, 1403, 2243, 2308, 2578, 2750, 2785, 2909 |
| FriOI | GRGCYC | 3 cut(s) | 8, 1159, 2857 |
| GlaI | GCGC | 5 cut(s) | 293, 371, 863, 1607, 2581 |
| GsaI | CCCAGC | 3 cut(s) | 1598, 2620, 2737 |
| GsuI | CTGGAG | 1 cut(s) | 1346 |
| HaeII | RGCGCY | 2 cut(s) | 295, 373 |
| HaeIII | GGCC | 6 cut(s) | 26, 55, 262, 822, 2869, 3076 |
| HapII | CCGG | 7 cut(s) | 212, 576, 1352, 1774, 1887, 2822, 3077 |
| HgaI | GACGC | 1 cut(s) | 2461 |
| HhaI | GCGC | 5 cut(s) | 294, 372, 864, 1608, 2582 |
| Hin6I | GCGC | 5 cut(s) | 292, 370, 862, 1606, 2580 |
| HinP1I | GCGC | 5 cut(s) | 292, 370, 862, 1606, 2580 |
| HincII | GTYRAC | 4 cut(s) | 653, 1522, 2179, 2386 |
| HindII | GTYRAC | 4 cut(s) | 653, 1522, 2179, 2386 |
| HpaI | GTTAAC | 1 cut(s) | 2386 |
| HpaII | CCGG | 7 cut(s) | 212, 576, 1352, 1774, 1887, 2822, 3077 |
| HphI | GGTGA | 5 cut(s) | 485, 2457, 2655, 2676, 3079 |
| Hpy166II | GTNNAC | 5 cut(s) | 154, 653, 1522, 2179, 2386 |
| Hpy8I | GTNNAC | 5 cut(s) | 154, 653, 1522, 2179, 2386 |
| Hpy99I | CGWCG | 1 cut(s) | 2477 |
| HpyCH4III | ACNGT | 8 cut(s) | 143, 149, 1309, 1568, 1667, 1864, 2192, 2699 |
| HpyCH4IV | ACGT | 3 cut(s) | 156, 2924, 3009 |
| HpyF3I | CTNAG | 8 cut(s) | 114, 774, 949, 1233, 1789, 2106, 2844, 2856 |
| HpySE526I | ACGT | 3 cut(s) | 156, 2924, 3009 |
| HspAI | GCGC | 5 cut(s) | 292, 370, 862, 1606, 2580 |
| Kpn2I | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| KroI | GCCGGC | 1 cut(s) | 3076 |
| KroNI | GCCGGC | 1 cut(s) | 3078 |
| Ksp22I | TGATCA | 1 cut(s) | 1129 |
| KspAI | GTTAAC | 1 cut(s) | 2386 |
| LmnI | GCTCC | 7 cut(s) | 1154, 1162, 2372, 2488, 2675, 2852, 3094 |
| LweI | GCATC | 7 cut(s) | 457, 520, 948, 1391, 1601, 2120, 2135 |
| MaeII | ACGT | 3 cut(s) | 156, 2924, 3009 |
| MaeIII | GTNAC | 8 cut(s) | 143, 1968, 2511, 2810, 2925, 2937, 3010, 3067 |
| MfeI | CAATTG | 1 cut(s) | 1212 |
| MflI | RGATCY | 4 cut(s) | 248, 1883, 2455, 2989 |
| MhlI | GDGCHC | 5 cut(s) | 8, 1076, 1159, 2680, 2857 |
| MlyI | GAGTC | 5 cut(s) | 136, 866, 2093, 2308, 2661 |
| MmeI | TCCRAC | 3 cut(s) | 2394, 2681, 2790 |
| MroI | TCCGGA | 3 cut(s) | 1351, 1886, 2821 |
| MroNI | GCCGGC | 1 cut(s) | 3076 |
| MroXI | GAANNNNTTC | 2 cut(s) | 982, 3026 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1498, 1856 |
| MspA1I | CMGCKG | 3 cut(s) | 29, 286, 2616 |
| MspCI | CTTAAG | 1 cut(s) | 2398 |
| MspI | CCGG | 7 cut(s) | 212, 576, 1352, 1774, 1887, 2822, 3077 |
| MspR9I | CCNGG | 6 cut(s) | 576, 928, 2646, 2889, 3032, 3065 |
| MunI | CAATTG | 1 cut(s) | 1212 |
| Mva1269I | GAATGC | 3 cut(s) | 197, 898, 1021 |
| MvaI | CCWGG | 5 cut(s) | 928, 2646, 2889, 3032, 3065 |
| MvnI | CGCG | 2 cut(s) | 298, 790 |
| NaeI | GCCGGC | 1 cut(s) | 3078 |
| NciI | CCSGG | 1 cut(s) | 576 |
| NgoMIV | GCCGGC | 1 cut(s) | 3076 |
| NheI | GCTAGC | 1 cut(s) | 1735 |
| NlaIV | GGNNCC | 3 cut(s) | 1548, 2886, 3036 |
| NmuCI | GTSAC | 4 cut(s) | 143, 2925, 3010, 3067 |
| NspI | RCATGY | 5 cut(s) | 398, 565, 1606, 2486, 2811 |
| PaqCI | CACCTGC | 1 cut(s) | 461 |
| PciI | ACATGT | 3 cut(s) | 394, 561, 2482 |
| PctI | GAATGC | 3 cut(s) | 197, 898, 1021 |
| PdiI | GCCGGC | 1 cut(s) | 3078 |
| PdmI | GAANNNNTTC | 2 cut(s) | 982, 3026 |
| PfoI | TCCNGGA | 1 cut(s) | 3030 |
| Ple19I | CGATCG | 1 cut(s) | 64 |
| PleI | GAGTC | 5 cut(s) | 135, 866, 2092, 2307, 2660 |
| PpsI | GAGTC | 5 cut(s) | 135, 866, 2092, 2307, 2660 |
| PpuMI | RGGWCCY | 2 cut(s) | 1357, 1874 |
| PscI | ACATGT | 3 cut(s) | 394, 561, 2482 |
| PshAI | GACNNNNGTC | 1 cut(s) | 126 |
| PshBI | ATTAAT | 2 cut(s) | 2073, 2265 |
| PsiI | TTATAA | 1 cut(s) | 1182 |
| Psp124BI | GAGCTC | 2 cut(s) | 1159, 2857 |
| Psp1406I | AACGTT | 1 cut(s) | 156 |
| Psp5II | RGGWCCY | 2 cut(s) | 1357, 1874 |
| Psp6I | CCWGG | 5 cut(s) | 926, 2644, 2887, 3030, 3063 |
| PspFI | CCCAGC | 3 cut(s) | 1594, 2616, 2733 |
| PspGI | CCWGG | 5 cut(s) | 926, 2644, 2887, 3030, 3063 |
| PspN4I | GGNNCC | 3 cut(s) | 1548, 2886, 3036 |
| PspPI | GGNCC | 5 cut(s) | 487, 1055, 1357, 1874, 3074 |
| PspPPI | RGGWCCY | 2 cut(s) | 1357, 1874 |
| PstI | CTGCAG | 1 cut(s) | 1300 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1409, 1877, 2098 |
| PsuI | RGATCY | 4 cut(s) | 248, 1883, 2455, 2989 |
| PvuI | CGATCG | 1 cut(s) | 64 |
| PvuII | CAGCTG | 1 cut(s) | 2616 |
| RsaI | GTAC | 4 cut(s) | 340, 1656, 1933, 2629 |
| RsaNI | GTAC | 4 cut(s) | 339, 1655, 1932, 2628 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1498, 1856 |
| SacI | GAGCTC | 2 cut(s) | 1159, 2857 |
| SalI | GTCGAC | 1 cut(s) | 651 |
| Sau96I | GGNCC | 5 cut(s) | 487, 1055, 1357, 1874, 3074 |
| ScaI | AGTACT | 2 cut(s) | 1933, 2629 |
| SchI | GAGTC | 5 cut(s) | 136, 866, 2093, 2308, 2661 |
| ScrFI | CCNGG | 6 cut(s) | 576, 928, 2646, 2889, 3032, 3065 |
| SduI | GDGCHC | 5 cut(s) | 8, 1076, 1159, 2680, 2857 |
| SfaNI | GCATC | 7 cut(s) | 457, 520, 948, 1391, 1601, 2120, 2135 |
| SfcI | CTRYAG | 4 cut(s) | 281, 1296, 1515, 2631 |
| SinI | GGWCC | 4 cut(s) | 487, 1055, 1357, 1874 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1498, 1856 |
| SmlI | CTYRAG | 2 cut(s) | 2398, 2527 |
| SmoI | CTYRAG | 2 cut(s) | 2398, 2527 |
| SspI | AATATT | 1 cut(s) | 983 |
| SstI | GAGCTC | 2 cut(s) | 1159, 2857 |
| StyD4I | CCNGG | 6 cut(s) | 574, 926, 2644, 2887, 3030, 3063 |
| StyI | CCWWGG | 4 cut(s) | 39, 714, 1443, 2516 |
| TaaI | ACNGT | 8 cut(s) | 143, 149, 1309, 1568, 1667, 1864, 2192, 2699 |
| TaiI | ACGT | 3 cut(s) | 159, 2927, 3012 |
| TaqI | TCGA | 5 cut(s) | 64, 382, 652, 867, 1087 |
| TatI | WGTACW | 3 cut(s) | 1654, 1931, 2627 |
| TauI | GCSGC | 6 cut(s) | 29, 289, 292, 301, 705, 2201 |
| TscAI | CASTG | 3 cut(s) | 148, 154, 1292 |
| TseFI | GTSAC | 4 cut(s) | 143, 2925, 3010, 3067 |
| Tsp45I | GTSAC | 4 cut(s) | 143, 2925, 3010, 3067 |
| TspDTI | ATGAA | 7 cut(s) | 890, 1656, 2222, 2283, 2369, 2580, 2941 |
| TspGWI | ACGGA | 2 cut(s) | 839, 1160 |
| TspRI | CASTG | 3 cut(s) | 148, 154, 1292 |
| Vha464I | CTTAAG | 1 cut(s) | 2398 |
| VpaK11BI | GGWCC | 4 cut(s) | 487, 1055, 1357, 1874 |
| VspI | ATTAAT | 2 cut(s) | 2073, 2265 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 597, 718, 827, 925 |
| XapI | RAATTY | 6 cut(s) | 46, 1195, 1649, 2212, 2915, 3040 |
| XbaI | TCTAGA | 1 cut(s) | 2458 |
| XceI | RCATGY | 5 cut(s) | 398, 565, 1606, 2486, 2811 |
| XmaJI | CCTAGG | 1 cut(s) | 2516 |
| XmiI | GTMKAC | 1 cut(s) | 652 |
| XmnI | GAANNNNTTC | 2 cut(s) | 982, 3026 |
| ZrmI | AGTACT | 2 cut(s) | 1933, 2629 |