RLG00000024711

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38439938 .. 38443641
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024711

Sequence Viewer

Length: 1431 bp
ATGGGAGCCCGCTGCTCCAGATTCTCTCTCTGCTGGTTCCACTCCCACCTTAAACCCTCCGTCCTCGAATCCACTGACCTCGAGAATGGGGGCGGCAAAAGCGACAAAAACTCGTGCCCGAGCTTCACCGAGTTCAGCTTAGACCAACTGAAAGCCGCCACGTGCGGCTTCTCCTCCGACAACATAGTCTCGGAACACGGCGAGAAAGCCCCCAACGTTGTCTACAAAGGAAAGCTCGACAACAACGCCGACCGTTGGATCGCCGTCAAGCGCTTCAACAAGCTGGCCTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCAAGATCGGTTGGGACATTGAGAAGTGAGAGATTGGCGAATCTGATTGGGTGTTGTTGTGAAGGAGATGAGAGGTTGTTGGTGGCTGAGTTTATGCCACATGAGACTTTGGCGAAGCATTTGTTTCATTGGGAGAGCCAGCCAATGAGATGGGCTATGAGGTTGAGGGTGGCTCTGTATTTGGCTCAGGCTCTTGAGTATTGTAGTGGTAAAGGGCGCGCACTATATCATGATCTCAATGCTTACAGGGTTTTGTTTGATAAGGATGCGAATCCGAGGCTGTCCTGCTTTGGACTTATGAAGAATAGCAGGGATGGGAAGAGTTACAGTACTAACTTGGCCTTTACCCCACCAGAGTACCTCAGGACAGGTAGGGTGACACAAGAAAGTGTAGTTTACAGCTTTGGAACCTTGTTGCTAGATCTTCTAAGTGGCAAACATATTCCCCCCAGCCATGCACTAGATCTTATTCGCGGCAAGAATTTCCTGATGCTGATGGATTCGGCTCTGGAGGAATCGTTAAAGCCAAAGAAGTATCGCCATTCATCTCATATTACTGTGGATAAGCAGGGATTGAACAACTGTAGCTTAGTTGCATCCCATGTTTTGATGGGTATCCCACAAGAAACGGCATCCTCAACACAGCCACTGTCATTAACACCTTTTGGTGAAGCTTGTTTGAGAATGGATCTGACAGCCATACATGAAATACTGGAGAAGAATGGATACAAAGATGATGAAGGCATTGCTAATGAGCTATCTTTTCAGCTGTGGACTAATCAAATGCAGGAGACCTTGGATTCTAAGAAGAGTGCAGATTCTGCTTTTAGAGCGAAAGACTACGCAACTGCAATTGATTCCTATACACAATTCATTGATTGTGGGACAATGGTATCACCAACGGTGTATGCTCGGCGTTGTCTGTCATACTTGATGAATGATATGGCACAAGAAGCCCTTGGGGATGCTATGCAAGCCCAGGTGATTTCTCCCGAGTGGCCCTGTGCTTTATATCTTCAAGCAGCTTGCCTATTCAAGCTTGGAATGGACAATGATGCACAAGAAACACTCAAAGACGGCACAAACTTGGAAGCCAAAAAGAACAGAACTTGA

Protein Analysis

477

Amino Acids

53.36

Weight (kDa)

6.37

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 73 - 254 4.9e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 73 - 258 3.1e-17 Protein kinase domain
TPR_BSK1_C PF25575 330 - 447 4.8e-63 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AbsI CCTCGAGG 1 cut(s) 311
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 537, 792
AciI CCGC 5 cut(s) 10, 93, 156, 165, 792
AclI AACGTT 1 cut(s) 216
AclWI GGATC 2 cut(s) 266, 1014
AcsI RAATTY 1 cut(s) 799
AcvI CACGTG 1 cut(s) 162
AfaI GTAC 2 cut(s) 649, 677
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 4 cut(s) 277, 895, 1337, 1354
AjnI CCWGG 2 cut(s) 287, 1296
Alw26I GTCTC 3 cut(s) 193, 416, 1103
AlwI GGATC 2 cut(s) 266, 1014
AlwNI CAGNNNCTG 2 cut(s) 967, 1139
Ama87I CYCGRG 4 cut(s) 80, 118, 311, 1310
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 4 cut(s) 285, 290, 657, 1316
ApeKI GCWGC 2 cut(s) 12, 1340
ApoI RAATTY 1 cut(s) 799
AspLEI GCGC 3 cut(s) 273, 537, 539
AspS9I GGNCC 2 cut(s) 291, 1317
AsuHPI GGTGA 5 cut(s) 118, 706, 998, 1206, 1312
AvaI CYCGRG 4 cut(s) 80, 118, 311, 1310
AxyI CCTNAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 119
BaeI ACNNNNGTAYC 4 cut(s) 659, 692, 1194, 1227
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BauI CACGAG 1 cut(s) 112
BbrPI CACGTG 1 cut(s) 162
BbvI GCAGC 1 cut(s) 1352
BccI CCATC 4 cut(s) 462, 626, 808, 922
BceAI ACGGC 4 cut(s) 214, 248, 963, 1411
BciT130I CCWGG 2 cut(s) 289, 1298
BciVI GTATCC 2 cut(s) 944, 1037
BcoDI GTCTC 3 cut(s) 193, 416, 1103
BfaI CTAG 2 cut(s) 737, 779
BfmI CTRYAG 1 cut(s) 901
BfoI RGCGCY 1 cut(s) 274
BfuI GTATCC 2 cut(s) 944, 1037
BglII AGATCT 2 cut(s) 739, 781
BisI GCNGC 6 cut(s) 13, 94, 156, 166, 793, 1341
BlsI GCNGC 6 cut(s) 14, 95, 157, 167, 794, 1342
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 289, 1298
BmeT110I CYCGRG 4 cut(s) 80, 118, 311, 1310
BmgT120I GGNCC 2 cut(s) 291, 1317
BmiI GGNNCC 3 cut(s) 7, 38, 727
BmrFI CCNGG 2 cut(s) 289, 1298
BmsI GCATC 6 cut(s) 574, 798, 923, 959, 1273, 1363
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 2 cut(s) 848, 1052
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 2 cut(s) 588, 932
BsaI GGTCTC 1 cut(s) 1103
BsaJI CCNNGG 4 cut(s) 593, 1113, 1276, 1296
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 1035
Bse21I CCTNAGG 1 cut(s) 680
Bse3DI GCAATG 1 cut(s) 1062
Bse8I GATNNNNATC 2 cut(s) 588, 932
BseBI CCWGG 2 cut(s) 289, 1298
BseDI CCNNGG 4 cut(s) 593, 1113, 1276, 1296
BseGI GGATG 5 cut(s) 589, 637, 914, 950, 1288
BseJI GATNNNNATC 2 cut(s) 588, 932
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 3 cut(s) 396, 518, 694
BseNI ACTGG 1 cut(s) 1035
BsePI GCGCGC 1 cut(s) 535
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 1352
BseYI CCCAGC 1 cut(s) 767
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 2 cut(s) 537, 792
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 287, 292, 659, 1318
BsiEI CGRYCG 1 cut(s) 253
BsiHKCI CYCGRG 4 cut(s) 80, 118, 311, 1310
BslFI GGGAC 2 cut(s) 346, 1216
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 3 cut(s) 193, 416, 1103
BsmFI GGGAC 2 cut(s) 346, 1216
BsnI GGCC 4 cut(s) 287, 292, 659, 1318
Bso31I GGTCTC 1 cut(s) 1103
BsoBI CYCGRG 4 cut(s) 80, 118, 311, 1310
Bsp1286I GDGCHC 2 cut(s) 10, 119
Bsp143I GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
BspACI CCGC 5 cut(s) 10, 93, 156, 165, 792
BspANI GGCC 4 cut(s) 287, 292, 659, 1318
BspCNI CTCAG 3 cut(s) 397, 517, 693
BspFNI CGCG 2 cut(s) 537, 792
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 7, 38, 727
BspPI GGATC 2 cut(s) 266, 1014
BspTNI GGTCTC 1 cut(s) 1103
BsrDI GCAATG 1 cut(s) 1062
BsrI ACTGG 1 cut(s) 1035
BssECI CCNNGG 4 cut(s) 593, 1113, 1276, 1296
BssHII GCGCGC 1 cut(s) 535
BssMI GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 1113, 1276
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 289, 1298
Bst4CI ACNGT 6 cut(s) 254, 647, 877, 902, 969, 1222
Bst6I CTCTTC 2 cut(s) 632, 1121
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 6 cut(s) 10, 285, 458, 537, 1293, 1345
BstDEI CTNAG 7 cut(s) 139, 405, 504, 680, 746, 907, 1122
BstF5I GGATG 5 cut(s) 589, 637, 914, 950, 1288
BstFNI CGCG 2 cut(s) 537, 792
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 3 cut(s) 273, 537, 539
BstKTI GATC 6 cut(s) 261, 326, 553, 742, 784, 1009
BstMAI GTCTC 3 cut(s) 193, 416, 1103
BstMBI GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 6 cut(s) 99, 289, 1139, 1148, 1271, 1292
BstNI CCWGG 2 cut(s) 289, 1298
BstSCI CCNGG 2 cut(s) 287, 1296
BstSFI CTRYAG 1 cut(s) 901
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 2 cut(s) 537, 792
BstV1I GCAGC 1 cut(s) 1352
BstX2I RGATCY 3 cut(s) 739, 781, 1006
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 3 cut(s) 739, 781, 1006
Bsu36I CCTNAGG 1 cut(s) 680
BsuI GTATCC 2 cut(s) 944, 1037
BsuRI GGCC 4 cut(s) 287, 292, 659, 1318
BtsCI GGATG 5 cut(s) 589, 637, 914, 950, 1288
BtsIMutI CAGTG 2 cut(s) 72, 965
Cac8I GCNNGC 6 cut(s) 10, 285, 458, 537, 1293, 1345
CaiI CAGNNNCTG 2 cut(s) 967, 1139
CciI TCATGA 1 cut(s) 547
CfoI GCGC 3 cut(s) 273, 537, 539
Cfr13I GGNCC 2 cut(s) 291, 1317
Csp6I GTAC 2 cut(s) 648, 676
CviAII CATG 5 cut(s) 419, 548, 773, 920, 1022
CviQI GTAC 2 cut(s) 648, 676
DdeI CTNAG 7 cut(s) 139, 405, 504, 680, 746, 907, 1122
DpnI GATC 6 cut(s) 260, 325, 552, 741, 783, 1008
DpnII GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 2 cut(s) 632, 1121
EarI CTCTTC 2 cut(s) 632, 1121
Eco130I CCWWGG 2 cut(s) 1113, 1276
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 1103
Eco47III AGCGCT 1 cut(s) 272
Eco72I CACGTG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 680
Eco88I CYCGRG 4 cut(s) 80, 118, 311, 1310
EcoRII CCWGG 2 cut(s) 287, 1296
EcoT14I CCWWGG 2 cut(s) 1113, 1276
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 1113, 1276
FaeI CATG 5 cut(s) 422, 551, 776, 923, 1025
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FaqI GGGAC 2 cut(s) 346, 1216
FatI CATG 5 cut(s) 418, 547, 772, 919, 1021
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 13, 94, 156, 166, 793, 1341
FokI GGATG 5 cut(s) 596, 644, 901, 937, 1295
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 6 cut(s) 13, 94, 156, 166, 793, 1341
FspBI CTAG 2 cut(s) 737, 779
GlaI GCGC 3 cut(s) 272, 536, 538
GluI GCNGC 6 cut(s) 13, 94, 156, 166, 793, 1341
GsaI CCCAGC 1 cut(s) 771
GsuI CTGGAG 2 cut(s) 848, 1052
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 4 cut(s) 287, 292, 659, 1318
HhaI GCGC 3 cut(s) 273, 537, 539
Hin1II CATG 5 cut(s) 422, 551, 776, 923, 1025
Hin6I GCGC 3 cut(s) 271, 535, 537
HinP1I GCGC 3 cut(s) 271, 535, 537
HindIII AAGCTT 2 cut(s) 990, 1355
HphI GGTGA 5 cut(s) 118, 706, 998, 1206, 1312
Hpy166II GTNNAC 3 cut(s) 223, 715, 1092
Hpy188I TCNGA 5 cut(s) 178, 193, 363, 594, 1011
Hpy188III TCNNGA 8 cut(s) 18, 82, 512, 548, 682, 805, 827, 1310
Hpy8I GTNNAC 3 cut(s) 223, 715, 1092
HpyAV CCTTC 2 cut(s) 374, 1052
HpyCH4III ACNGT 6 cut(s) 254, 647, 877, 902, 969, 1222
HpyCH4IV ACGT 2 cut(s) 161, 216
HpyCH4V TGCA 7 cut(s) 776, 914, 1105, 1133, 1169, 1291, 1376
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 289, 1139, 1148, 1271, 1292
HpyF3I CTNAG 7 cut(s) 139, 405, 504, 680, 746, 907, 1122
HpySE526I ACGT 2 cut(s) 161, 216
Hsp92II CATG 5 cut(s) 422, 551, 776, 923, 1025
HspAI GCGC 3 cut(s) 271, 535, 537
Kzo9I GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
LmnI GCTCC 2 cut(s) 5, 20
Lsp1109I GCAGC 1 cut(s) 1352
LweI GCATC 6 cut(s) 574, 798, 923, 959, 1273, 1363
MaeI CTAG 2 cut(s) 737, 779
MaeII ACGT 2 cut(s) 161, 216
MaeIII GTNAC 2 cut(s) 641, 694
MalI GATC 6 cut(s) 260, 325, 552, 741, 783, 1008
MboI GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
MboII GAAGA 6 cut(s) 631, 649, 734, 1048, 1138, 1325
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 3 cut(s) 739, 781, 1006
MhlI GDGCHC 2 cut(s) 10, 119
MluCI AATT 4 cut(s) 305, 799, 1170, 1187
MmeI TCCRAC 2 cut(s) 201, 236
MseI TTAA 3 cut(s) 51, 839, 974
MspA1I CMGCKG 2 cut(s) 12, 1087
MspR9I CCNGG 2 cut(s) 289, 1298
MunI CAATTG 1 cut(s) 1170
MvaI CCWGG 2 cut(s) 289, 1298
MvnI CGCG 2 cut(s) 537, 792
MwoI GCNNNNNNNGC 6 cut(s) 99, 289, 1139, 1148, 1271, 1292
NdeII GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
NlaIII CATG 5 cut(s) 422, 551, 776, 923, 1025
NlaIV GGNNCC 3 cut(s) 7, 38, 727
NmeAIII GCCGAG 1 cut(s) 1210
NmuCI GTSAC 1 cut(s) 694
PaeR7I CTCGAG 2 cut(s) 80, 311
PagI TCATGA 1 cut(s) 547
PauI GCGCGC 1 cut(s) 535
PkrI GCNGC 6 cut(s) 14, 95, 157, 167, 794, 1342
PmaCI CACGTG 1 cut(s) 162
PmlI CACGTG 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 287, 1296
PspCI CACGTG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 767
PspGI CCWGG 2 cut(s) 287, 1296
PspN4I GGNNCC 3 cut(s) 7, 38, 727
PspPI GGNCC 2 cut(s) 291, 1317
PspXI VCTCGAGB 1 cut(s) 311
PstNI CAGNNNCTG 2 cut(s) 967, 1139
PsuI RGATCY 3 cut(s) 739, 781, 1006
PteI GCGCGC 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 1087
RsaI GTAC 2 cut(s) 649, 677
RsaNI GTAC 2 cut(s) 648, 676
SaqAI TTAA 3 cut(s) 51, 839, 974
SatI GCNGC 6 cut(s) 13, 94, 156, 166, 793, 1341
Sau3AI GATC 6 cut(s) 258, 323, 550, 739, 781, 1006
Sau96I GGNCC 2 cut(s) 291, 1317
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 289, 1298
SduI GDGCHC 2 cut(s) 10, 119
SfaNI GCATC 6 cut(s) 574, 798, 923, 959, 1273, 1363
SfcI CTRYAG 1 cut(s) 901
Sfr274I CTCGAG 2 cut(s) 80, 311
SlaI CTCGAG 2 cut(s) 80, 311
SmlI CTYRAG 3 cut(s) 80, 311, 512
SmoI CTYRAG 3 cut(s) 80, 311, 512
Sse9I AATT 4 cut(s) 305, 799, 1170, 1187
SsiI CCGC 5 cut(s) 10, 93, 156, 165, 792
SspMI CTAG 2 cut(s) 737, 779
StyD4I CCNGG 2 cut(s) 287, 1296
StyI CCWWGG 2 cut(s) 1113, 1276
TaaI ACNGT 6 cut(s) 254, 647, 877, 902, 969, 1222
TaiI ACGT 2 cut(s) 164, 219
TaqI TCGA 4 cut(s) 66, 81, 237, 312
TasI AATT 4 cut(s) 305, 799, 1170, 1187
TatI WGTACW 1 cut(s) 647
TauI GCSGC 4 cut(s) 96, 158, 168, 795
Tru1I TTAA 3 cut(s) 51, 839, 974
Tru9I TTAA 3 cut(s) 51, 839, 974
TscAI CASTG 2 cut(s) 79, 972
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 2 cut(s) 12, 1340
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 7 cut(s) 434, 632, 852, 1038, 1071, 1180, 1268
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 79, 972
XapI RAATTY 1 cut(s) 799
XhoI CTCGAG 2 cut(s) 80, 311
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 737, 779
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.