FvH4_6g14330

Histone H2B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015792
Physical Location & Seq
Reverse (-)
8775953 .. 8776663
711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14330.t1

Sequence Viewer

Length: 393 bp
ATGGCTCCGACGAAGGCCGAAAAGAAGCCGGTGGCGGAGAAGTCCCCGGCGGCGGAGAAGAAGATCCCCAAGGAGGGCGGCGTGGAGGTGAAGAAGAAGAAGAAGGTGAAGAAGAGCACGGAGACGTATAAGATCTACATATTCAAGGTCTTGAAGCAGGTGCATCCGGACATTGGGATCTCAAGCAAGGCCATGGGGATCATGAACAGTTTTATCAATGATATATTCGAGAAGCTGGCGCAGGAGGCGTCGAGGTTGGCTAGGTATAACAAGAAGCCGACGATTACGTCGAGGGAGATCCAGACTGCTGTTAGGTTGGTGCTGCCGGGAGAGCTGGCCAAGCATGCAGTCTCTGAGGGAACCAAGGCCGTCACCAAGTTTACGAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

131

Amino Acids

14.39

Weight (kDa)

9.97

Isoelectric Point (pI)

25.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 31 - 106 1.8e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 60 - 128 1.6e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 4 cut(s) 35, 50, 53, 78
AclWI GGATC 4 cut(s) 58, 185, 206, 292
AcoI YGGCCR 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 248
AfiI CCNNNNNNNGG 4 cut(s) 52, 73, 74, 173
AgsI TTSAA 2 cut(s) 145, 154
AluBI AGCT 2 cut(s) 235, 334
AluI AGCT 2 cut(s) 235, 334
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 116, 355
AlwI GGATC 4 cut(s) 58, 185, 206, 292
AlwNI CAGNNNCTG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 4 cut(s) 15, 189, 336, 366
ApeKI GCWGC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 241
AsuC2I CCSGG 2 cut(s) 47, 327
AsuHPI GGTGA 3 cut(s) 100, 118, 364
BalI TGGCCA 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 353
BcnI CCSGG 2 cut(s) 47, 327
BcoDI GTCTC 2 cut(s) 116, 355
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 148
BglII AGATCT 1 cut(s) 132
BisI GCNGC 3 cut(s) 51, 79, 323
BlsI GCNGC 3 cut(s) 52, 80, 324
Bme1390I CCNGG 2 cut(s) 47, 327
BmiI GGNNCC 2 cut(s) 6, 361
BmrFI CCNGG 2 cut(s) 47, 327
BmsI GCATC 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 47, 327
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 45, 69, 192, 363
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 73, 74, 173
Bse118I RCCGGY 1 cut(s) 28
BseAI TCCGGA 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 45, 69, 192, 363
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 4 cut(s) 52, 73, 74, 173
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 4 cut(s) 17, 191, 338, 368
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 4 cut(s) 29, 47, 167, 326
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 52, 73, 74, 173
BsmAI GTCTC 2 cut(s) 116, 355
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 4 cut(s) 17, 191, 338, 368
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 5 cut(s) 63, 132, 177, 198, 297
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 4 cut(s) 35, 50, 53, 78
BspANI GGCC 4 cut(s) 17, 191, 338, 368
BspCNI CTCAG 1 cut(s) 346
BspEI TCCGGA 1 cut(s) 166
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 6, 361
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 4 cut(s) 58, 185, 206, 292
BspQI GCTCTTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 45, 69, 192, 363
BssMI GATC 5 cut(s) 63, 132, 177, 198, 297
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 3 cut(s) 69, 192, 363
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 237, 336, 345
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 5 cut(s) 66, 135, 180, 201, 300
BstMAI GTCTC 2 cut(s) 116, 355
BstMBI GATC 5 cut(s) 63, 132, 177, 198, 297
BstMWI GCNNNNNNNGC 4 cut(s) 245, 331, 340, 344
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 45, 325
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 4 cut(s) 63, 132, 177, 297
BstYI RGATCY 4 cut(s) 63, 132, 177, 297
BsuRI GGCC 4 cut(s) 17, 191, 338, 368
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 237, 336, 345
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 201
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 1 cut(s) 237
CviAII CATG 3 cut(s) 193, 202, 344
DdeI CTNAG 1 cut(s) 354
DpnI GATC 5 cut(s) 65, 134, 179, 200, 299
DpnII GATC 5 cut(s) 63, 132, 177, 198, 297
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 2 cut(s) 50, 68
Eco130I CCWWGG 3 cut(s) 69, 192, 363
EcoT14I CCWWGG 3 cut(s) 69, 192, 363
ErhI CCWWGG 3 cut(s) 69, 192, 363
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 196, 205, 347
FaiI YATR 7 cut(s) 129, 140, 194, 203, 224, 267, 345
FaqI GGGAC 1 cut(s) 28
FatI CATG 3 cut(s) 192, 201, 343
Fnu4HI GCNGC 3 cut(s) 51, 79, 323
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 51, 79, 323
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 240
GluI GCNGC 3 cut(s) 51, 79, 323
HaeIII GGCC 4 cut(s) 17, 191, 338, 368
HapII CCGG 4 cut(s) 29, 47, 167, 326
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 3 cut(s) 196, 205, 347
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HpaII CCGG 4 cut(s) 29, 47, 167, 326
HphI GGTGA 3 cut(s) 100, 118, 364
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 2 cut(s) 9, 355
Hpy188III TCNNGA 5 cut(s) 151, 167, 202, 229, 301
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 4 cut(s) 13, 253, 283, 292
HpyAV CCTTC 2 cut(s) 7, 97
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 125, 287
HpyCH4V TGCA 2 cut(s) 163, 347
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 331, 340, 344
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 125, 287
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 3 cut(s) 196, 205, 347
HspAI GCGC 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 5 cut(s) 63, 132, 177, 198, 297
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 42, 60, 143, 180, 221, 227, 314, 320, 339
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 125, 287
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 65, 134, 179, 200, 299
MboI GATC 5 cut(s) 63, 132, 177, 198, 297
MboII GAAGA 8 cut(s) 70, 73, 103, 106, 109, 112, 121, 124
MflI RGATCY 4 cut(s) 63, 132, 177, 297
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 6 cut(s) 67, 79, 238, 246, 285, 349
Mox20I TGGCCA 1 cut(s) 338
MroI TCCGGA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 4 cut(s) 29, 47, 167, 326
MspR9I CCNGG 2 cut(s) 47, 327
MwoI GCNNNNNNNGC 4 cut(s) 245, 331, 340, 344
NciI CCSGG 2 cut(s) 47, 327
NcoI CCATGG 1 cut(s) 192
NdeII GATC 5 cut(s) 63, 132, 177, 198, 297
NlaIII CATG 3 cut(s) 196, 205, 347
NlaIV GGNNCC 2 cut(s) 6, 361
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PagI TCATGA 1 cut(s) 201
PaqCI CACCTGC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PkrI GCNGC 3 cut(s) 52, 80, 324
PspN4I GGNNCC 2 cut(s) 6, 361
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 4 cut(s) 63, 132, 177, 297
SapI GCTCTTC 1 cut(s) 107
SatI GCNGC 3 cut(s) 51, 79, 323
Sau3AI GATC 5 cut(s) 63, 132, 177, 198, 297
ScrFI CCNGG 2 cut(s) 47, 327
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SphI GCATGC 1 cut(s) 347
SsiI CCGC 4 cut(s) 35, 50, 53, 78
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 45, 325
StyI CCWWGG 3 cut(s) 69, 192, 363
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 128, 290
TaqI TCGA 3 cut(s) 228, 251, 290
TauI GCSGC 2 cut(s) 53, 81
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 347
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.