pycom12g13210

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015792
Physical Location & Seq
Forward (+)
15684988 .. 15686040
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13210.1

Sequence Viewer

Length: 585 bp
ATGATTTCAACAGTTATCCGCTCTGCTCTTGATTTGCATAGACATTCAAGAACTATTGTCCTAGGTGCTAGGCACCTCCACCAAAATCCCTTAATCCACTCCCTCTCCCCGCACAAATCCGTTTCAACTTCCCTTCGAGTCCGTTCGCACAACAAACCGCCCGAAATGGCGCCGACGAAGGCCGAGAAGAAGCCGGTGGCGGAGAAGGCACCGGCGGGGGAGAATAAGCCGACGAAGGCGGAGAAGCAGATCCCGAAGGAAGGCGGAGGAAGCGTGGAAATGAAGAAGAAGAAGAAGGTAAAGAAATCGACGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCGGACATCGGGATATCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAGGCGTCGCGTTTGGCCAGGTACAATAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTCAGGTTGGTGCTTCCTGGTGAGCTCGCCAAACACGCCGTTTCCGAGGGCACCAAGGCCGTTACCAAGTTTACCAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

195

Amino Acids

21.5

Weight (kDa)

10.23

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 93 - 170 2.5e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 124 - 192 4.2e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 340
AccB1I GGYRCC 4 cut(s) 72, 169, 208, 551
AccBSI CCGCTC 1 cut(s) 21
AccII CGCG 2 cut(s) 431, 445
AciI CCGC 8 cut(s) 19, 110, 158, 200, 215, 239, 264, 498
AclWI GGATC 3 cut(s) 244, 398, 484
AcoI YGGCCR 1 cut(s) 450
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 170, 440
AfaI GTAC 2 cut(s) 320, 458
AfiI CCNNNNNNNGG 3 cut(s) 260, 365, 504
AgsI TTSAA 4 cut(s) 9, 48, 126, 337
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 2 cut(s) 452, 517
AluBI AGCT 3 cut(s) 402, 427, 526
AluI AGCT 3 cut(s) 402, 427, 526
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 3 cut(s) 244, 398, 484
AoxI GGCC 4 cut(s) 180, 381, 450, 558
Asp700I GAANNNNTTC 1 cut(s) 401
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 2 cut(s) 172, 433
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 352
AvrII CCTAGG 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 554
BalI TGGCCA 1 cut(s) 452
BanI GGYRCC 4 cut(s) 72, 169, 208, 551
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BceAI ACGGC 3 cut(s) 485, 524, 545
BciT130I CCWGG 2 cut(s) 454, 519
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 62, 69
BfoI RGCGCY 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 340
BglII AGATCT 1 cut(s) 324
BlnI CCTAGG 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 359, 454, 519
Bme18I GGWCC 1 cut(s) 352
BmgBI CACGTC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 4 cut(s) 74, 171, 210, 553
BmrFI CCNGG 3 cut(s) 359, 454, 519
BoxI GACNNNNGTC 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 329
BsaHI GRCGYC 2 cut(s) 170, 440
BsaJI CCNNGG 4 cut(s) 61, 384, 546, 555
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 258, 288
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 365, 504
Bse118I RCCGGY 2 cut(s) 193, 211
Bse1I ACTGG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 2 cut(s) 454, 519
BseDI CCNNGG 4 cut(s) 61, 384, 546, 555
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 3 cut(s) 260, 365, 504
BseNI ACTGG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 554
Bsh1236I CGCG 2 cut(s) 431, 445
BshFI GGCC 4 cut(s) 182, 383, 452, 560
BshNI GGYRCC 4 cut(s) 72, 169, 208, 551
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 3 cut(s) 194, 212, 359
BslI CCNNNNNNNGG 3 cut(s) 260, 365, 504
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsnI GGCC 4 cut(s) 182, 383, 452, 560
Bsp1286I GDGCHC 2 cut(s) 528, 554
Bsp143I GATC 5 cut(s) 249, 324, 390, 474, 489
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 8 cut(s) 19, 110, 158, 200, 215, 239, 264, 498
BspANI GGCC 4 cut(s) 182, 383, 452, 560
BspFNI CGCG 2 cut(s) 431, 445
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 4 cut(s) 74, 171, 210, 553
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 3 cut(s) 244, 398, 484
BspT107I GGYRCC 4 cut(s) 72, 169, 208, 551
BsrBI CCGCTC 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 193, 211
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 2 cut(s) 193, 211
BssECI CCNNGG 4 cut(s) 61, 384, 546, 555
BssMI GATC 5 cut(s) 249, 324, 390, 474, 489
BssNI GRCGYC 2 cut(s) 170, 440
BssT1I CCWWGG 3 cut(s) 61, 384, 555
Bst2UI CCWGG 2 cut(s) 454, 519
Bst4CI ACNGT 1 cut(s) 13
BstACI GRCGYC 2 cut(s) 170, 440
BstC8I GCNNGC 2 cut(s) 429, 528
BstDSI CCRYGG 1 cut(s) 384
BstFNI CGCG 2 cut(s) 431, 445
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 2 cut(s) 172, 433
BstKTI GATC 5 cut(s) 252, 327, 393, 477, 492
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 5 cut(s) 249, 324, 390, 474, 489
BstMWI GCNNNNNNNGC 4 cut(s) 206, 270, 437, 536
BstNI CCWGG 2 cut(s) 454, 519
BstPAI GACNNNNGTC 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 357, 452, 517
BstSLI GKGCMC 1 cut(s) 554
BstUI CGCG 2 cut(s) 431, 445
BstX2I RGATCY 3 cut(s) 249, 324, 489
BstYI RGATCY 3 cut(s) 249, 324, 489
BsuRI GGCC 4 cut(s) 182, 383, 452, 560
BtgI CCRYGG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 480
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 429, 528
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 172, 433
Cfr10I RCCGGY 2 cut(s) 193, 211
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 319, 457
CviAII CATG 2 cut(s) 385, 394
CviQI GTAC 2 cut(s) 319, 457
DinI GGCGCC 1 cut(s) 171
DpnI GATC 5 cut(s) 251, 326, 392, 476, 491
DpnII GATC 5 cut(s) 249, 324, 390, 474, 489
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 450
EciI GGCGGA 3 cut(s) 215, 254, 279
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 3 cut(s) 61, 384, 555
Eco24I GRGCYC 1 cut(s) 528
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 452, 517
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 3 cut(s) 61, 384, 555
EcoT38I GRGCYC 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 3 cut(s) 61, 384, 555
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 388, 397
FaiI YATR 3 cut(s) 39, 386, 395
FatI CATG 2 cut(s) 384, 393
FauI CCCGC 2 cut(s) 117, 208
FriOI GRGCYC 1 cut(s) 528
FspBI CTAG 2 cut(s) 62, 69
GlaI GCGC 2 cut(s) 171, 432
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 4 cut(s) 182, 383, 452, 560
HapII CCGG 3 cut(s) 194, 212, 359
HgaI GACGC 1 cut(s) 429
HhaI GCGC 2 cut(s) 172, 433
Hin1I GRCGYC 2 cut(s) 170, 440
Hin1II CATG 2 cut(s) 388, 397
Hin6I GCGC 2 cut(s) 170, 431
HinP1I GCGC 2 cut(s) 170, 431
HinfI GANTC 1 cut(s) 138
HpaII CCGG 3 cut(s) 194, 212, 359
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 2 cut(s) 355, 573
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 7 cut(s) 29, 48, 253, 367, 394, 421, 493
Hpy8I GTNNAC 2 cut(s) 355, 573
Hpy99I CGWCG 6 cut(s) 178, 235, 313, 445, 475, 484
HpyAV CCTTC 7 cut(s) 143, 172, 199, 229, 250, 254, 289
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 317, 479
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 270, 437, 536
HpySE526I ACGT 2 cut(s) 317, 479
Hsp92I GRCGYC 2 cut(s) 170, 440
Hsp92II CATG 2 cut(s) 388, 397
HspAI GCGC 2 cut(s) 170, 431
KasI GGCGCC 1 cut(s) 169
Kzo9I GATC 5 cut(s) 249, 324, 390, 474, 489
MaeI CTAG 2 cut(s) 62, 69
MaeII ACGT 2 cut(s) 317, 479
MaeIII GTNAC 1 cut(s) 562
MalI GATC 5 cut(s) 251, 326, 392, 476, 491
MbiI CCGCTC 1 cut(s) 21
MboI GATC 5 cut(s) 249, 324, 390, 474, 489
MboII GAAGA 7 cut(s) 199, 295, 298, 301, 304, 325, 409
MflI RGATCY 3 cut(s) 249, 324, 489
MhlI GDGCHC 2 cut(s) 528, 554
MlsI TGGCCA 1 cut(s) 452
MluNI TGGCCA 1 cut(s) 452
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 6 cut(s) 86, 113, 260, 430, 477, 541
Mox20I TGGCCA 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 452
MseI TTAA 2 cut(s) 92, 583
Msp20I TGGCCA 1 cut(s) 452
MspI CCGG 3 cut(s) 194, 212, 359
MspR9I CCNGG 3 cut(s) 359, 454, 519
MvaI CCWGG 2 cut(s) 454, 519
MvnI CGCG 2 cut(s) 431, 445
MwoI GCNNNNNNNGC 4 cut(s) 206, 270, 437, 536
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 359
NcoI CCATGG 1 cut(s) 384
NdeII GATC 5 cut(s) 249, 324, 390, 474, 489
NlaIII CATG 2 cut(s) 388, 397
NlaIV GGNNCC 4 cut(s) 74, 171, 210, 553
NmeAIII GCCGAG 1 cut(s) 208
PagI TCATGA 1 cut(s) 393
PcsI WCGNNNNNNNCGW 4 cut(s) 314, 417, 479, 543
PdmI GAANNNNTTC 1 cut(s) 401
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 146
PshAI GACNNNNGTC 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 452, 517
PspGI CCWGG 2 cut(s) 452, 517
PspN4I GGNNCC 4 cut(s) 74, 171, 210, 553
PspPI GGNCC 1 cut(s) 352
PsuI RGATCY 3 cut(s) 249, 324, 489
RsaI GTAC 2 cut(s) 320, 458
RsaNI GTAC 2 cut(s) 319, 457
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 2 cut(s) 92, 583
Sau3AI GATC 5 cut(s) 249, 324, 390, 474, 489
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 359, 454, 519
SduI GDGCHC 2 cut(s) 528, 554
SfoI GGCGCC 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 211
SinI GGWCC 1 cut(s) 352
SsiI CCGC 8 cut(s) 19, 110, 158, 200, 215, 239, 264, 498
SspDI GGCGCC 1 cut(s) 169
SspMI CTAG 2 cut(s) 62, 69
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 357, 452, 517
StyI CCWWGG 3 cut(s) 61, 384, 555
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 320, 482
TaqI TCGA 4 cut(s) 136, 308, 420, 482
Tru1I TTAA 2 cut(s) 92, 583
Tru9I TTAA 2 cut(s) 92, 583
TspDTI ATGAA 3 cut(s) 296, 394, 410
TspGWI ACGGA 3 cut(s) 109, 131, 326
VpaK11BI GGWCC 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 2 cut(s) 62, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.