MD04G1120800.v1.1

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015792
Physical Location & Seq
Forward (+)
20732624 .. 20733037
414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1120800.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGCGCCAACGAAGGGTGAGAAAAAGCCGGTGGCGGAGAAGGCACCGGCTGGGGAGAAGAAGCCGACGAAGGCGGAGAAGAAGATCCCAAAGGAAGGCGGCGTGGAGATGAAGAAGAAGAAGAAGGTGAAGAAATCGACGGAGACGTACAAGATATACATCTTCAAGGTGCTTAAGCAGGTCCACCCGGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAGGCGTCACGTTTGGCCAGGTATAATAAAAAGCCAACGATCACGTCGAGGGAGATCCAGACCGCCGTCAGGTTGGTGCTGCCCGGCGAGCTCGCCAAACACGCCGTGTCTGAGGGCACCAAGGCCGTTACTAAATTTACCAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

138

Amino Acids

15.16

Weight (kDa)

10.0

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 38 - 113 1.5e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 67 - 135 1.8e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 3 cut(s) 4, 43, 380
AciI CCGC 4 cut(s) 35, 74, 99, 327
AclWI GGATC 4 cut(s) 79, 206, 227, 313
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 5, 269
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 4 cut(s) 14, 95, 194, 333
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 166
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 3 cut(s) 231, 256, 355
AluI AGCT 3 cut(s) 231, 256, 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 4 cut(s) 79, 206, 227, 313
AoxI GGCC 3 cut(s) 210, 279, 387
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 188, 348
AsuHPI GGTGA 2 cut(s) 29, 139
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 3 cut(s) 4, 43, 380
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 330
BceAI ACGGC 3 cut(s) 314, 353, 374
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 2 cut(s) 188, 348
BcoDI GTCTC 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 100, 344
BlsI GCNGC 2 cut(s) 101, 345
Bme1390I CCNGG 3 cut(s) 188, 283, 348
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 6, 45, 382
BmrFI CCNGG 3 cut(s) 188, 283, 348
BoxI GACNNNNGTC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 188, 348
BsaBI GATNNNNATC 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 5, 269
BsaJI CCNNGG 2 cut(s) 213, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 95, 194, 333
Bse118I RCCGGY 2 cut(s) 28, 46
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 213, 384
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 4 cut(s) 14, 95, 194, 333
BseMII CTCAG 2 cut(s) 275, 366
BseNI ACTGG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 3 cut(s) 212, 281, 389
BshNI GGYRCC 3 cut(s) 4, 43, 380
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 29, 47, 188, 348
BslI CCNNNNNNNGG 4 cut(s) 14, 95, 194, 333
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 3 cut(s) 212, 281, 389
Bsp1286I GDGCHC 2 cut(s) 357, 383
Bsp143I GATC 5 cut(s) 84, 198, 219, 303, 318
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 4 cut(s) 35, 74, 99, 327
BspANI GGCC 3 cut(s) 212, 281, 389
BspCNI CTCAG 2 cut(s) 274, 367
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 6, 45, 382
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 4 cut(s) 79, 206, 227, 313
BspT107I GGYRCC 3 cut(s) 4, 43, 380
BspTI CTTAAG 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 28, 46
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 2 cut(s) 28, 46
BssECI CCNNGG 2 cut(s) 213, 384
BssMI GATC 5 cut(s) 84, 198, 219, 303, 318
BssNI GRCGYC 2 cut(s) 5, 269
BssT1I CCWWGG 2 cut(s) 213, 384
Bst2UI CCWGG 1 cut(s) 283
BstACI GRCGYC 2 cut(s) 5, 269
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 258, 353, 357
BstDEI CTNAG 2 cut(s) 261, 375
BstDSI CCRYGG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 87, 201, 222, 306, 321
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 5 cut(s) 84, 198, 219, 303, 318
BstMWI GCNNNNNNNGC 4 cut(s) 41, 266, 352, 365
BstNI CCWGG 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 186, 281, 346
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 3 cut(s) 84, 198, 318
BstYI RGATCY 3 cut(s) 84, 198, 318
BsuRI GGCC 3 cut(s) 212, 281, 389
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 309
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 258, 353, 357
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 28, 46
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 214, 223
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 261, 375
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 86, 200, 221, 305, 320
DpnII GATC 5 cut(s) 84, 198, 219, 303, 318
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 279
EciI GGCGGA 2 cut(s) 50, 89
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 213, 384
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 213, 384
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 213, 384
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 2 cut(s) 217, 226
FaiI YATR 4 cut(s) 157, 215, 224, 288
FatI CATG 2 cut(s) 213, 222
Fnu4HI GCNGC 2 cut(s) 100, 344
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 100, 344
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 100, 344
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 212, 281, 389
HapII CCGG 4 cut(s) 29, 47, 188, 348
HgaI GACGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 269
Hin1II CATG 2 cut(s) 217, 226
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 4 cut(s) 29, 47, 188, 348
HphI GGTGA 2 cut(s) 29, 139
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 5 cut(s) 196, 223, 250, 263, 322
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 3 cut(s) 70, 142, 313
HpyAV CCTTC 5 cut(s) 7, 34, 64, 89, 118
HpyCH4IV ACGT 3 cut(s) 146, 274, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 266, 352, 365
HpyF3I CTNAG 2 cut(s) 261, 375
HpySE526I ACGT 3 cut(s) 146, 274, 308
Hsp92I GRCGYC 2 cut(s) 5, 269
Hsp92II CATG 2 cut(s) 217, 226
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 5 cut(s) 84, 198, 219, 303, 318
Lsp1109I GCAGC 1 cut(s) 330
MaeII ACGT 3 cut(s) 146, 274, 308
MaeIII GTNAC 2 cut(s) 270, 391
MalI GATC 5 cut(s) 86, 200, 221, 305, 320
MboI GATC 5 cut(s) 84, 198, 219, 303, 318
MboII GAAGA 9 cut(s) 70, 91, 94, 124, 127, 130, 133, 142, 154
MflI RGATCY 3 cut(s) 84, 198, 318
MhlI GDGCHC 2 cut(s) 357, 383
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 3 cut(s) 259, 306, 370
Mox20I TGGCCA 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 281
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 4 cut(s) 29, 47, 188, 348
MspR9I CCNGG 3 cut(s) 188, 283, 348
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 4 cut(s) 41, 266, 352, 365
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 188, 348
NcoI CCATGG 1 cut(s) 213
NdeII GATC 5 cut(s) 84, 198, 219, 303, 318
NlaIII CATG 2 cut(s) 217, 226
NlaIV GGNNCC 3 cut(s) 6, 45, 382
NmuCI GTSAC 1 cut(s) 270
PagI TCATGA 1 cut(s) 222
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 246, 308
PdmI GAANNNNTTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 101, 345
PluTI GGCGCC 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 3 cut(s) 6, 45, 382
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 3 cut(s) 84, 198, 318
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 100, 344
Sau3AI GATC 5 cut(s) 84, 198, 219, 303, 318
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 3 cut(s) 188, 283, 348
SduI GDGCHC 2 cut(s) 357, 383
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 398
SsiI CCGC 4 cut(s) 35, 74, 99, 327
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 186, 281, 346
StyI CCWWGG 2 cut(s) 213, 384
TaiI ACGT 3 cut(s) 149, 277, 311
TaqI TCGA 3 cut(s) 137, 249, 311
TasI AATT 1 cut(s) 398
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 3 cut(s) 125, 223, 239
TspGWI ACGGA 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.