Rmu_sc0000962.1_g000066

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000962.1
OG0015792
Physical Location & Seq
Forward (+)
253421 .. 253831
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000962.1_g000066.1.cds

Sequence Viewer

Length: 411 bp
atggctccgacgaaggccgagaagaagccggtggcggagaagtccccggcggcggagaagaagccgaaggcggagaagaagatcccgaaggaaggtggcgtggagatgaagaagaaaaagaaggtgaagaagagcacggagacctataagatctacatcttcaaggttctgaagcaggttcatccggacattggtatctccagcaaggccatggggatcatgaacagttttatcaatgatatttttgagaagctggcgcaggaggcctccaggttggccaggtacaacaagaagcccaccattacgtcgagggagatccagactgctgttaggttggtgttgcctggagagctggccaagcatgcagtttccgagggaaccaaggcggtcaccaagtttacaagttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

10.0

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 5 cut(s) 35, 50, 53, 71, 386
AclWI GGATC 3 cut(s) 76, 224, 310
AcoI YGGCCR 2 cut(s) 276, 354
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 52, 92, 191
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 3 cut(s) 269, 278, 343
AluBI AGCT 2 cut(s) 253, 352
AluI AGCT 2 cut(s) 253, 352
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 3 cut(s) 76, 224, 310
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 5 cut(s) 15, 207, 264, 276, 354
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 136, 382
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
BalI TGGCCA 2 cut(s) 278, 356
Bbv12I GWGCWC 1 cut(s) 137
BciT130I CCWGG 3 cut(s) 271, 280, 345
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 166
BglII AGATCT 1 cut(s) 150
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 4 cut(s) 47, 271, 280, 345
BmiI GGNNCC 2 cut(s) 6, 379
BmrFI CCNGG 4 cut(s) 47, 271, 280, 345
BpmI CTGGAG 3 cut(s) 184, 253, 366
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 4 cut(s) 45, 210, 372, 381
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 92, 191
Bse118I RCCGGY 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 155
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 3 cut(s) 271, 280, 345
BseDI CCNNGG 4 cut(s) 45, 210, 372, 381
BseGI GGATG 1 cut(s) 181
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 52, 92, 191
BshFI GGCC 5 cut(s) 17, 209, 266, 278, 356
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 29, 47, 185
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 52, 92, 191
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 5 cut(s) 17, 209, 266, 278, 356
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 81, 150, 216, 315
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 5 cut(s) 35, 50, 53, 71, 386
BspANI GGCC 5 cut(s) 17, 209, 266, 278, 356
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 6, 379
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 76, 224, 310
BspQI GCTCTTC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 45, 210, 372, 381
BssMI GATC 4 cut(s) 81, 150, 216, 315
BssT1I CCWWGG 2 cut(s) 210, 381
Bst2UI CCWGG 3 cut(s) 271, 280, 345
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 255, 354, 363
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 388
BstF5I GGATG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 4 cut(s) 84, 153, 219, 318
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 4 cut(s) 81, 150, 216, 315
BstMWI GCNNNNNNNGC 4 cut(s) 263, 349, 358, 362
BstNI CCWGG 3 cut(s) 271, 280, 345
BstNSI RCATGY 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 388
BstSCI CCNGG 4 cut(s) 45, 269, 278, 343
BstX2I RGATCY 3 cut(s) 81, 150, 315
BstYI RGATCY 3 cut(s) 81, 150, 315
BsuRI GGCC 5 cut(s) 17, 209, 266, 278, 356
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 255, 354, 363
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 28
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 211, 220, 362
CviQI GTAC 1 cut(s) 283
DpnI GATC 4 cut(s) 83, 152, 218, 317
DpnII GATC 4 cut(s) 81, 150, 216, 315
EaeI YGGCCR 2 cut(s) 276, 354
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 3 cut(s) 50, 68, 86
Eco130I CCWWGG 2 cut(s) 210, 381
Eco147I AGGCCT 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 269, 278, 343
EcoT14I CCWWGG 2 cut(s) 210, 381
ErhI CCWWGG 2 cut(s) 210, 381
FaeI CATG 3 cut(s) 214, 223, 365
FaiI YATR 4 cut(s) 147, 212, 221, 363
FaqI GGGAC 1 cut(s) 28
FatI CATG 3 cut(s) 210, 219, 361
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 51
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 3 cut(s) 184, 253, 366
HaeIII GGCC 5 cut(s) 17, 209, 266, 278, 356
HapII CCGG 3 cut(s) 29, 47, 185
HhaI GCGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 214, 223, 365
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HpaII CCGG 3 cut(s) 29, 47, 185
HphI GGTGA 2 cut(s) 136, 382
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 3 cut(s) 9, 171, 373
Hpy188III TCNNGA 4 cut(s) 85, 185, 220, 319
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 2 cut(s) 13, 310
HpyAV CCTTC 5 cut(s) 7, 61, 82, 86, 115
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 349, 358, 362
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 214, 223, 365
HspAI GCGC 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 81, 150, 216, 315
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 10
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 388
MalI GATC 4 cut(s) 83, 152, 218, 317
MboI GATC 4 cut(s) 81, 150, 216, 315
MboII GAAGA 9 cut(s) 34, 70, 88, 91, 121, 124, 139, 142, 151
MflI RGATCY 3 cut(s) 81, 150, 315
MhlI GDGCHC 1 cut(s) 137
MlsI TGGCCA 2 cut(s) 278, 356
MluNI TGGCCA 2 cut(s) 278, 356
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 256, 277, 303, 367
Mox20I TGGCCA 2 cut(s) 278, 356
MroI TCCGGA 1 cut(s) 184
MscI TGGCCA 2 cut(s) 278, 356
Msp20I TGGCCA 2 cut(s) 278, 356
MspI CCGG 3 cut(s) 29, 47, 185
MspR9I CCNGG 4 cut(s) 47, 271, 280, 345
MvaI CCWGG 3 cut(s) 271, 280, 345
MwoI GCNNNNNNNGC 4 cut(s) 263, 349, 358, 362
NciI CCSGG 1 cut(s) 47
NcoI CCATGG 1 cut(s) 210
NdeII GATC 4 cut(s) 81, 150, 216, 315
NlaIII CATG 3 cut(s) 214, 223, 365
NlaIV GGNNCC 2 cut(s) 6, 379
NmeAIII GCCGAG 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 365
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 1 cut(s) 219
PceI AGGCCT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 269, 278, 343
PspEI GGTNACC 1 cut(s) 388
PspGI CCWGG 3 cut(s) 269, 278, 343
PspN4I GGNNCC 2 cut(s) 6, 379
PsuI RGATCY 3 cut(s) 81, 150, 315
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 4 cut(s) 81, 150, 216, 315
ScrFI CCNGG 4 cut(s) 47, 271, 280, 345
SduI GDGCHC 1 cut(s) 137
SphI GCATGC 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 5 cut(s) 35, 50, 53, 71, 386
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 4 cut(s) 45, 269, 278, 343
StyI CCWWGG 2 cut(s) 210, 381
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 308
TauI GCSGC 1 cut(s) 53
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 122, 170, 236
TspGWI ACGGA 1 cut(s) 152
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.