MD12G1138100.v1.1

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015792
Physical Location & Seq
Forward (+)
21570573 .. 21571092
520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1138100.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGCGCCGACGAAGGCCGAGAAGAAGCCGGTGGCGGAGAAGGCACCGGCGGGGGAGAAGAAGCCGACGAAGGCGGAGAAGCAGATCCCGAAGGAAGGCGGAGGAGGCGTGGAAATGAAGAAGAAGAAGAAGGTAAAGAAATCGACAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCGGACATCGGGATATCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCACAGGAGGCGTCGCGTTTGGCCAGGTACAATAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTCAGGTTGGTGCTTCCTGGTGAGCTCGCCAAACATGCCGTTTCCGAGGGCACCAAGGCCGTTACCAATTGTATGGAATTGGTTTTGGATTTTTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

146

Amino Acids

16.03

Weight (kDa)

9.88

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 40 - 115 1.8e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 69 - 134 7e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 3 cut(s) 4, 43, 386
AccII CGCG 1 cut(s) 280
AciI CCGC 5 cut(s) 35, 50, 74, 99, 333
AclWI GGATC 3 cut(s) 79, 233, 319
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 2 cut(s) 5, 275
AfaI GTAC 2 cut(s) 155, 293
AfiI CCNNNNNNNGG 3 cut(s) 95, 200, 339
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 287, 352
AluBI AGCT 3 cut(s) 237, 262, 361
AluI AGCT 3 cut(s) 237, 262, 361
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 3 cut(s) 79, 233, 319
AoxI GGCC 4 cut(s) 15, 216, 285, 393
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 3 cut(s) 4, 43, 386
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BceAI ACGGC 3 cut(s) 320, 359, 380
BciT130I CCWGG 2 cut(s) 289, 354
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 159
Bme1390I CCNGG 3 cut(s) 194, 289, 354
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 6, 45, 388
BmrFI CCNGG 3 cut(s) 194, 289, 354
BoxI GACNNNNGTC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 2 cut(s) 5, 275
BsaJI CCNNGG 3 cut(s) 219, 381, 390
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 200, 339
Bse118I RCCGGY 2 cut(s) 28, 46
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 289, 354
BseDI CCNNGG 3 cut(s) 219, 381, 390
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 95, 200, 339
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 17, 218, 287, 395
BshNI GGYRCC 3 cut(s) 4, 43, 386
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 29, 47, 194
BslI CCNNNNNNNGG 3 cut(s) 95, 200, 339
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 4 cut(s) 17, 218, 287, 395
Bsp1286I GDGCHC 2 cut(s) 363, 389
Bsp143I GATC 5 cut(s) 84, 159, 225, 309, 324
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 5 cut(s) 35, 50, 74, 99, 333
BspANI GGCC 4 cut(s) 17, 218, 287, 395
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 6, 45, 388
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 79, 233, 319
BspT107I GGYRCC 3 cut(s) 4, 43, 386
BsrFI RCCGGY 2 cut(s) 28, 46
BssAI RCCGGY 2 cut(s) 28, 46
BssECI CCNNGG 3 cut(s) 219, 381, 390
BssMI GATC 5 cut(s) 84, 159, 225, 309, 324
BssNI GRCGYC 2 cut(s) 5, 275
BssT1I CCWWGG 2 cut(s) 219, 390
Bst2UI CCWGG 2 cut(s) 289, 354
BstACI GRCGYC 2 cut(s) 5, 275
BstC8I GCNNGC 2 cut(s) 264, 363
BstDSI CCRYGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 87, 162, 228, 312, 327
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 5 cut(s) 84, 159, 225, 309, 324
BstMWI GCNNNNNNNGC 4 cut(s) 41, 105, 272, 371
BstNI CCWGG 2 cut(s) 289, 354
BstNSI RCATGY 1 cut(s) 374
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 192, 287, 352
BstSLI GKGCMC 1 cut(s) 389
BstUI CGCG 1 cut(s) 280
BstX2I RGATCY 3 cut(s) 84, 159, 324
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 3 cut(s) 84, 159, 324
BsuRI GGCC 4 cut(s) 17, 218, 287, 395
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 315
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 264, 363
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 28, 46
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 154, 292
CviAII CATG 3 cut(s) 220, 229, 371
CviQI GTAC 2 cut(s) 154, 292
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 86, 161, 227, 311, 326
DpnII GATC 5 cut(s) 84, 159, 225, 309, 324
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 285
EciI GGCGGA 3 cut(s) 50, 89, 114
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 219, 390
Eco24I GRGCYC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 287, 352
EcoRV GATATC 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 219, 390
EcoT38I GRGCYC 1 cut(s) 363
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 219, 390
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 223, 232, 374
FaiI YATR 4 cut(s) 221, 230, 372, 410
FatI CATG 3 cut(s) 219, 228, 370
FauI CCCGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 363
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 17, 218, 287, 395
HapII CCGG 3 cut(s) 29, 47, 194
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 275
Hin1II CATG 3 cut(s) 223, 232, 374
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 3 cut(s) 29, 47, 194
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 6 cut(s) 88, 202, 229, 256, 328, 432
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 5 cut(s) 13, 70, 280, 310, 319
HpyAV CCTTC 6 cut(s) 7, 34, 64, 85, 89, 124
HpyCH4IV ACGT 2 cut(s) 152, 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 105, 272, 371
HpySE526I ACGT 2 cut(s) 152, 314
Hsp92I GRCGYC 2 cut(s) 5, 275
Hsp92II CATG 3 cut(s) 223, 232, 374
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 5 cut(s) 84, 159, 225, 309, 324
MaeII ACGT 2 cut(s) 152, 314
MaeIII GTNAC 1 cut(s) 397
MalI GATC 5 cut(s) 86, 161, 227, 311, 326
MboI GATC 5 cut(s) 84, 159, 225, 309, 324
MboII GAAGA 8 cut(s) 34, 70, 130, 133, 136, 139, 160, 244
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 3 cut(s) 84, 159, 324
MhlI GDGCHC 2 cut(s) 363, 389
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 2 cut(s) 403, 413
MluNI TGGCCA 1 cut(s) 287
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 5 cut(s) 95, 98, 265, 312, 376
Mox20I TGGCCA 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 3 cut(s) 29, 47, 194
MspR9I CCNGG 3 cut(s) 194, 289, 354
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 2 cut(s) 289, 354
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 4 cut(s) 41, 105, 272, 371
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 84, 159, 225, 309, 324
NlaIII CATG 3 cut(s) 223, 232, 374
NlaIV GGNNCC 3 cut(s) 6, 45, 388
NmeAIII GCCGAG 1 cut(s) 43
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 3 cut(s) 149, 252, 314
PdmI GAANNNNTTC 1 cut(s) 236
PluTI GGCGCC 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 287, 352
PspGI CCWGG 2 cut(s) 287, 352
PspN4I GGNNCC 3 cut(s) 6, 45, 388
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 3 cut(s) 84, 159, 324
RsaI GTAC 2 cut(s) 155, 293
RsaNI GTAC 2 cut(s) 154, 292
SacI GAGCTC 1 cut(s) 363
Sau3AI GATC 5 cut(s) 84, 159, 225, 309, 324
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 3 cut(s) 194, 289, 354
SduI GDGCHC 2 cut(s) 363, 389
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 1 cut(s) 187
Sse9I AATT 2 cut(s) 403, 413
SsiI CCGC 5 cut(s) 35, 50, 74, 99, 333
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 192, 287, 352
StyI CCWWGG 2 cut(s) 219, 390
TaiI ACGT 2 cut(s) 155, 317
TaqI TCGA 3 cut(s) 143, 255, 317
TasI AATT 2 cut(s) 403, 413
TspDTI ATGAA 3 cut(s) 131, 229, 245
VpaK11BI GGWCC 1 cut(s) 187
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.