Prupe.6G250100_v2.0.a1

histone H2B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015792
Physical Location & Seq
Forward (+)
24548907 .. 24549636
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G250100.1

Sequence Viewer

Length: 405 bp
ATGGCGCCAACGAAGGCCGAGAAAAAACCAGTCACAGAGAAAGCCCCGGCGGAGAAGAAGCCGAAGGCTGAGAAGAAGATCCCCAAGGAAGGCGGCGTCGAGAAGAAGAAGAAGAAGGTGAAGAAGAGCACCGAGACGTACAAGATCTACATCTTCAAGGTCCTGAAGCAAGTGCACCCCGATATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATATTCGAGAAGCTCGCGCAGGAGGCCTCACGATTGGCTCGCTACAACAAGAAGCCCACCATTACGTCGCGAGAGATCCAGACCGCGGTCAGGCTGGTCCTGCCCGGTGAGCTCGCCAAACACGCCGTTTCCGAGGGCACCAAGGCCGTCACCAAGTTTACCAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

10.0

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 371
AccII CGCG 3 cut(s) 251, 304, 320
AciI CCGC 4 cut(s) 50, 93, 318, 320
AclWI GGATC 4 cut(s) 73, 197, 218, 304
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 2 cut(s) 5, 96
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 89, 185, 186, 319, 324
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 3 cut(s) 222, 247, 346
AluI AGCT 3 cut(s) 222, 247, 346
Alw21I GWGCWC 3 cut(s) 131, 177, 348
Alw26I GTCTC 1 cut(s) 128
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 4 cut(s) 73, 197, 218, 304
AoxI GGCC 4 cut(s) 15, 201, 258, 378
ApaLI GTGCAC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 2 cut(s) 7, 253
AspS9I GGNCC 2 cut(s) 160, 331
AsuC2I CCSGG 2 cut(s) 47, 339
AsuHPI GGTGA 3 cut(s) 130, 353, 376
AvaII GGWCC 2 cut(s) 160, 331
BaeGI GKGCMC 2 cut(s) 177, 374
BanI GGYRCC 2 cut(s) 4, 371
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 3 cut(s) 131, 177, 348
BceAI ACGGC 2 cut(s) 344, 365
BcnI CCSGG 2 cut(s) 47, 339
BcoDI GTCTC 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 144
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 2 cut(s) 47, 339
Bme18I GGWCC 2 cut(s) 160, 331
BmgT120I GGNCC 2 cut(s) 160, 331
BmiI GGNNCC 2 cut(s) 6, 373
BmrFI CCNGG 2 cut(s) 47, 339
BoxI GACNNNNGTC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 178
BpuMI CCSGG 2 cut(s) 47, 339
BsaBI GATNNNNATC 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 5, 96
BsaJI CCNNGG 6 cut(s) 45, 84, 204, 318, 366, 375
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 185, 186, 319, 324
Bse1I ACTGG 2 cut(s) 29, 396
Bse8I GATNNNNATC 1 cut(s) 149
BseDI CCNNGG 6 cut(s) 45, 84, 204, 318, 366, 375
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 5 cut(s) 89, 185, 186, 319, 324
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 29, 396
BseSI GKGCMC 2 cut(s) 177, 374
Bsh1236I CGCG 3 cut(s) 251, 304, 320
BshFI GGCC 4 cut(s) 17, 203, 260, 380
BshNI GGYRCC 2 cut(s) 4, 371
BsiHKAI GWGCWC 3 cut(s) 131, 177, 348
BsiSI CCGG 2 cut(s) 47, 339
BslI CCNNNNNNNGG 5 cut(s) 89, 185, 186, 319, 324
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 4 cut(s) 17, 203, 260, 380
Bsp1286I GDGCHC 4 cut(s) 131, 177, 348, 374
Bsp143I GATC 5 cut(s) 78, 144, 189, 210, 309
Bsp19I CCATGG 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 304
BspACI CCGC 4 cut(s) 50, 93, 318, 320
BspANI GGCC 4 cut(s) 17, 203, 260, 380
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 3 cut(s) 251, 304, 320
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 6, 373
BspPI GGATC 4 cut(s) 73, 197, 218, 304
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 2 cut(s) 4, 371
BsrI ACTGG 2 cut(s) 29, 396
BssECI CCNNGG 6 cut(s) 45, 84, 204, 318, 366, 375
BssMI GATC 5 cut(s) 78, 144, 189, 210, 309
BssNI GRCGYC 2 cut(s) 5, 96
BssT1I CCWWGG 3 cut(s) 84, 204, 375
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 5, 96
BstC8I GCNNGC 3 cut(s) 249, 274, 348
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 2 cut(s) 204, 318
BstFNI CGCG 3 cut(s) 251, 304, 320
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 253
BstKTI GATC 5 cut(s) 81, 147, 192, 213, 312
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 5 cut(s) 78, 144, 189, 210, 309
BstMWI GCNNNNNNNGC 4 cut(s) 257, 334, 343, 356
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 45, 337
BstSLI GKGCMC 2 cut(s) 177, 374
BstUI CGCG 3 cut(s) 251, 304, 320
BstX2I RGATCY 4 cut(s) 78, 144, 189, 309
BstYI RGATCY 4 cut(s) 78, 144, 189, 309
BsuRI GGCC 4 cut(s) 17, 203, 260, 380
BtgI CCRYGG 2 cut(s) 204, 318
BtuMI TCGCGA 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 249, 274, 348
CciI TCATGA 1 cut(s) 213
CfoI GCGC 2 cut(s) 7, 253
Cfr13I GGNCC 2 cut(s) 160, 331
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 205, 214
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 69
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 80, 146, 191, 212, 311
DpnII GATC 5 cut(s) 78, 144, 189, 210, 309
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 84, 204, 375
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 160, 331
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 160
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 3 cut(s) 84, 204, 375
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 84, 204, 375
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 208, 217
FaiI YATR 3 cut(s) 206, 215, 236
FatI CATG 2 cut(s) 204, 213
Fnu4HI GCNGC 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 2 cut(s) 6, 252
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 17, 203, 260, 380
HapII CCGG 2 cut(s) 47, 339
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 7, 253
Hin1I GRCGYC 2 cut(s) 5, 96
Hin1II CATG 2 cut(s) 208, 217
Hin6I GCGC 2 cut(s) 5, 251
HinP1I GCGC 2 cut(s) 5, 251
HpaII CCGG 2 cut(s) 47, 339
HphI GGTGA 3 cut(s) 130, 353, 376
Hpy166II GTNNAC 2 cut(s) 175, 393
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 8 cut(s) 100, 163, 187, 214, 241, 264, 303, 313
Hpy8I GTNNAC 2 cut(s) 175, 393
Hpy99I CGWCG 2 cut(s) 101, 304
HpyAV CCTTC 4 cut(s) 7, 58, 83, 109
HpyCH4IV ACGT 2 cut(s) 137, 299
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 334, 343, 356
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 137, 299
Hsp92I GRCGYC 2 cut(s) 5, 96
Hsp92II CATG 2 cut(s) 208, 217
HspAI GCGC 2 cut(s) 5, 251
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 5 cut(s) 78, 144, 189, 210, 309
LguI GCTCTTC 1 cut(s) 119
MaeII ACGT 2 cut(s) 137, 299
MaeIII GTNAC 2 cut(s) 31, 382
MalI GATC 5 cut(s) 80, 146, 191, 212, 311
MboI GATC 5 cut(s) 78, 144, 189, 210, 309
MflI RGATCY 4 cut(s) 78, 144, 189, 309
MhlI GDGCHC 4 cut(s) 131, 177, 348, 374
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 3 cut(s) 250, 271, 361
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 47, 339
MspR9I CCNGG 2 cut(s) 47, 339
MvnI CGCG 3 cut(s) 251, 304, 320
MwoI GCNNNNNNNGC 4 cut(s) 257, 334, 343, 356
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 47, 339
NcoI CCATGG 1 cut(s) 204
NdeII GATC 5 cut(s) 78, 144, 189, 210, 309
NlaIII CATG 2 cut(s) 208, 217
NlaIV GGNNCC 2 cut(s) 6, 373
NmeAIII GCCGAG 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 31, 382
NruI TCGCGA 1 cut(s) 304
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 363
PdmI GAANNNNTTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 6, 373
PspPI GGNCC 2 cut(s) 160, 331
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 4 cut(s) 78, 144, 189, 309
RruI TCGCGA 1 cut(s) 304
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SacI GAGCTC 1 cut(s) 348
SacII CCGCGG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 403
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 5 cut(s) 78, 144, 189, 210, 309
Sau96I GGNCC 2 cut(s) 160, 331
ScrFI CCNGG 2 cut(s) 47, 339
SduI GDGCHC 4 cut(s) 131, 177, 348, 374
SetI ASST 7 cut(s) 120, 140, 162, 224, 249, 302, 348
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 2 cut(s) 160, 331
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 4 cut(s) 50, 93, 318, 320
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 348
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 45, 337
StyI CCWWGG 3 cut(s) 84, 204, 375
TaiI ACGT 2 cut(s) 140, 302
TaqI TCGA 2 cut(s) 99, 240
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 403
Tru9I TTAA 1 cut(s) 403
TseFI GTSAC 2 cut(s) 31, 382
Tsp45I GTSAC 2 cut(s) 31, 382
TspDTI ATGAA 2 cut(s) 214, 230
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 160, 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.