Rh3DG157100

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015792
Physical Location & Seq
Reverse (-)
13504433 .. 13506694
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG157100.1

Sequence Viewer

Length: 483 bp
ATGCACCCTCCACCGAAACCCCTGAATTCACTCTCTCTTTCTCATAGTTCGATCATCATCAAATCACAATCAATGGCTCCGACGAAGGCCGAGAAGAAGCCGGTGGCGGAGAAGTCCCCGGCGGCGGAGAAGAAACCGAAGGCGGAGAAGAAGATCCCCAAGGAAGGCGGCGTGGAGATGAAGAAGAAGAAGAAGGTGAAGAAGAGCACGGAGACCTATAAGATCTACATCTTCAAGGTTCTGAAGCAGGTTCATCCGGACATTGGTATCTCCAGCAAGGCCATGGGGATCATGAATAGTTTTATCAATGATATTTTTGAGAAGCTGGCGCAGGAGGCCTCGAGGTTGGCCAGGTACAACAAGAAGCCGACCATTACGTCGAGGGAGATCCAGACTGCTGTTAGGTTGGTGTTGCCTGGAGAGCTGGCCAAGCATGCAGTTTCGGAGGGAACCAAGGCAGTCACCAAGTTTACAAGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

160

Amino Acids

17.68

Weight (kDa)

10.06

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 61 - 136 2.2e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 90 - 158 2.7e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015792)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14330
malus_domestica MD04G1120800.v1.1 MD12G1138100.v1.1
prunus_persica Prupe.6G250100_v2.0.a1
pyrus_communis pycom12g13210
rosa_chinensis RchiOBHm_Chr3g0467331
rosa_laevigata RLG00000024510
rosa_multiflora Rmu_sc0000962.1_g000066
rosa_roxburghii Rroxscaffold_6G00413730
rosa_rugosa Rorug03G0086400
rosa_samantha Rh3AG135000 Rh3BG156300 Rh3CG155900 Rh3DG157100
rosa_wichuraiana Rw3G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AbsI CCTCGAGG 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 5 cut(s) 107, 122, 125, 143, 168
AclWI GGATC 3 cut(s) 148, 296, 382
AcoI YGGCCR 2 cut(s) 348, 426
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 124, 164, 263
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 2 cut(s) 350, 415
AluBI AGCT 3 cut(s) 325, 424, 477
AluI AGCT 3 cut(s) 325, 424, 477
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 148, 296, 382
Ama87I CYCGRG 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 5 cut(s) 87, 279, 336, 348, 426
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 208, 454
AvaI CYCGRG 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BalI TGGCCA 2 cut(s) 350, 428
Bbv12I GWGCWC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 352, 417
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 222
BisI GCNGC 2 cut(s) 123, 169
BlsI GCNGC 2 cut(s) 124, 170
Bme1390I CCNGG 3 cut(s) 119, 352, 417
BmeT110I CYCGRG 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 78, 451
BmrFI CCNGG 3 cut(s) 119, 352, 417
BpmI CTGGAG 2 cut(s) 256, 438
BpuMI CCSGG 1 cut(s) 119
BsaBI GATNNNNATC 2 cut(s) 56, 227
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 117, 159, 282, 453
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 164, 263
Bse118I RCCGGY 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 56, 227
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 352, 417
BseDI CCNNGG 4 cut(s) 117, 159, 282, 453
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 2 cut(s) 56, 227
BseLI CCNNNNNNNGG 3 cut(s) 124, 164, 263
BshFI GGCC 5 cut(s) 89, 281, 338, 350, 428
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 3 cut(s) 101, 119, 257
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 3 cut(s) 124, 164, 263
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 5 cut(s) 89, 281, 338, 350, 428
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 5 cut(s) 51, 153, 222, 288, 387
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 5 cut(s) 107, 122, 125, 143, 168
BspANI GGCC 5 cut(s) 89, 281, 338, 350, 428
BspEI TCCGGA 1 cut(s) 256
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 78, 451
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 3 cut(s) 148, 296, 382
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 4 cut(s) 117, 159, 282, 453
BssMI GATC 5 cut(s) 51, 153, 222, 288, 387
BssT1I CCWWGG 3 cut(s) 159, 282, 453
Bst2UI CCWGG 2 cut(s) 352, 417
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 327, 426, 435
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 5 cut(s) 54, 156, 225, 291, 390
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 5 cut(s) 51, 153, 222, 288, 387
BstMWI GCNNNNNNNGC 4 cut(s) 335, 421, 430, 434
BstNI CCWGG 2 cut(s) 352, 417
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 3 cut(s) 117, 350, 415
BstX2I RGATCY 3 cut(s) 153, 222, 387
BstYI RGATCY 3 cut(s) 153, 222, 387
BsuRI GGCC 5 cut(s) 89, 281, 338, 350, 428
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 327, 426, 435
CciI TCATGA 1 cut(s) 291
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 100
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 283, 292, 434
CviQI GTAC 1 cut(s) 355
DpnI GATC 5 cut(s) 53, 155, 224, 290, 389
DpnII GATC 5 cut(s) 51, 153, 222, 288, 387
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 348, 426
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 3 cut(s) 122, 140, 158
Eco130I CCWWGG 3 cut(s) 159, 282, 453
Eco147I AGGCCT 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 350, 415
EcoT14I CCWWGG 3 cut(s) 159, 282, 453
ErhI CCWWGG 3 cut(s) 159, 282, 453
FaeI CATG 3 cut(s) 286, 295, 437
FaiI YATR 5 cut(s) 45, 219, 284, 293, 435
FaqI GGGAC 1 cut(s) 100
FatI CATG 3 cut(s) 282, 291, 433
Fnu4HI GCNGC 2 cut(s) 123, 169
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 123, 169
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 123, 169
GsuI CTGGAG 2 cut(s) 256, 438
HaeIII GGCC 5 cut(s) 89, 281, 338, 350, 428
HapII CCGG 3 cut(s) 101, 119, 257
HhaI GCGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 286, 295, 437
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HpaII CCGG 3 cut(s) 101, 119, 257
HphI GGTGA 2 cut(s) 208, 454
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 3 cut(s) 81, 243, 445
Hpy188III TCNNGA 3 cut(s) 257, 292, 391
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 2 cut(s) 85, 382
HpyAV CCTTC 4 cut(s) 79, 133, 158, 187
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 2 cut(s) 4, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 421, 430, 434
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 3 cut(s) 286, 295, 437
HspAI GCGC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 51, 153, 222, 288, 387
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 82
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 460
MalI GATC 5 cut(s) 53, 155, 224, 290, 389
MboI GATC 5 cut(s) 51, 153, 222, 288, 387
MflI RGATCY 3 cut(s) 153, 222, 387
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 2 cut(s) 350, 428
MluCI AATT 1 cut(s) 25
MluNI TGGCCA 2 cut(s) 350, 428
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 6 cut(s) 18, 328, 336, 349, 375, 439
Mox20I TGGCCA 2 cut(s) 350, 428
MroI TCCGGA 1 cut(s) 256
MscI TGGCCA 2 cut(s) 350, 428
Msp20I TGGCCA 2 cut(s) 350, 428
MspI CCGG 3 cut(s) 101, 119, 257
MspR9I CCNGG 3 cut(s) 119, 352, 417
MvaI CCWGG 2 cut(s) 352, 417
MwoI GCNNNNNNNGC 4 cut(s) 335, 421, 430, 434
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 1 cut(s) 282
NdeII GATC 5 cut(s) 51, 153, 222, 288, 387
NlaIII CATG 3 cut(s) 286, 295, 437
NlaIV GGNNCC 2 cut(s) 78, 451
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 340
PagI TCATGA 1 cut(s) 291
PceI AGGCCT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 124, 170
Psp6I CCWGG 2 cut(s) 350, 415
PspGI CCWGG 2 cut(s) 350, 415
PspN4I GGNNCC 2 cut(s) 78, 451
PspXI VCTCGAGB 1 cut(s) 340
PsuI RGATCY 3 cut(s) 153, 222, 387
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 2 cut(s) 123, 169
Sau3AI GATC 5 cut(s) 51, 153, 222, 288, 387
ScrFI CCNGG 3 cut(s) 119, 352, 417
SduI GDGCHC 1 cut(s) 209
Sfr274I CTCGAG 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SphI GCATGC 1 cut(s) 437
Sse9I AATT 1 cut(s) 25
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 5 cut(s) 107, 122, 125, 143, 168
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 3 cut(s) 117, 350, 415
StyI CCWWGG 3 cut(s) 159, 282, 453
TaiI ACGT 1 cut(s) 380
TaqI TCGA 3 cut(s) 50, 341, 380
TasI AATT 1 cut(s) 25
TauI GCSGC 2 cut(s) 125, 171
TseFI GTSAC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 194, 242, 308
TspGWI ACGGA 1 cut(s) 224
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.