Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010067

Physical Location & Seq

Genomic Coordinates Forward (+)

8817073 .. 8819676

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAGCGGCCATGAATTGGTTGAGAGATTCAAGGCTGCAAAGCCTTTCTTAGCTGTTGTTTTCTTGCAATTTGGGCTTGCAGGGATGGATATTCTTTGCAAGGCTGCACTTAACGAGGGGGTGAGCAACTATGTGCTCGTCGTCTACCGTCACGCAGTTGCCACTCTAGTTGTTGGTCCTTTTGCAGTGGTTCTGGACAAAAAAGTAAGGCCAAAGATGACACTTGCAATCTTCACCAAGATAATGGTGCTCGGCTTGCTAGAGCCAGTGCTTGACCAAAATTTATATTACCTGGGAATGAAGTACACAACAGCAACCTTTGCAGCAGCTATGTCCAATATTCTTCCTGCCCTTACTTTTGTAATGGCTTGGATTCTTAGGCTCGAGAAAGTAAAATTGACATGCATCCGAAGCCAGTGTAAGCTGCTCGGAACTGCAGCAACAGTTGCAGGTGCCATGATCATGACACTGGTAAAAGGACCACTTTTGAAGCTGTTTTGGACCAGAGCAACTACAAGTAACCAACAGCAAACAAATGGGGTAGATATTCATAGTTCAATTAAGGGTGCCCTAATGATCACAGCTGGTTGCTTCTGCTGGGCTTGTTTCATGATTCTGCAGTCGATGACACTAAGAACATACCCTGCTGAGCTCTCCCTTTCAGCTTGGATATGCCTGATGGGCACATTGGAAGGAACTGCTGTAGCATTAGTCATGGAAAGGGGAAACGCCGCAGTTTGGGCCATACATTGGGATGGAAAATTATTGGCAGCAGTTTACAGTGGCATATTCTGTTCAGGACTAGCTTATTACATTCAGGGAGTGGTAATGAAACACAGAGGCCCTGTGTTTGTGACAGCATTTAGTCCCCTAAGCATGGTTATTGTTGCTGTCATGAGCTCCTTCATTTTGCGAGAGCAATTGTTTCTTGGAAGGTTACTTGGTGCTTTTGTCATAATCATCGGCCTGTATCTTGTTGTTTGGGGTAAGAGCAAAGAGAAGTCCCCAGAAGAGGAACTAGCAACAACTAAACAAGTAGGAGAGGAAAAGGATAGGGCCAATCTTCAGGTCATCACAATTGCGTCATCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

366

Amino Acids

39.9

Weight (kDa)

9.34

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 155	3.2e-10	EamA-like transporter family
EamA	PF00892	188 - 327	2e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37450 AT2G37450 AT2G37450 AT2G37460
fragaria_vesca	FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370
malus_domestica	MD04G1120400.v1.1
prunus_persica	Prupe.6G249600_v2.0.a1
pyrus_communis	pycom04g10950
rosa_chinensis	RchiOBHm_Chr3g0467431
rosa_laevigata	RLG00000024505
rosa_multiflora	Rmu_sc0001601.1_g000006
rosa_roxburghii	Rroxscaffold_6G00413680
rosa_rugosa	Rorug03G0086900
rosa_samantha	Rh3BG157000 Rh3CG156900 Rh3DG157800
rosa_wichuraiana	Rw3G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	2 cut(s)	452, 566
AccB7I	CCANNNNNTGG	2 cut(s)	16, 750
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	6, 732
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	1049
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	5 cut(s)	16, 738, 750, 877, 1012
AgsI	TTSAA	3 cut(s)	31, 490, 558
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	9 cut(s)	53, 329, 424, 493, 584, 652, 665, 806, 900
AluI	AGCT	9 cut(s)	53, 329, 424, 493, 584, 652, 665, 806, 900
Alw21I	GWGCWC	4 cut(s)	138, 252, 654, 902
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	6 cut(s)	7, 209, 741, 841, 964, 1056
ApeKI	GCWGC	7 cut(s)	35, 104, 323, 326, 424, 437, 770
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	6 cut(s)	176, 479, 501, 741, 842, 1056
AsuHPI	GGTGA	2 cut(s)	133, 226
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	3 cut(s)	176, 479, 501
BaeGI	GKGCMC	2 cut(s)	571, 686
BanI	GGYRCC	2 cut(s)	452, 566
BanII	GRGCYC	2 cut(s)	654, 902
Bbv12I	GWGCWC	4 cut(s)	138, 252, 654, 902
BbvI	GCAGC	7 cut(s)	22, 91, 335, 338, 411, 449, 782
BccI	CCATC	3 cut(s)	79, 673, 749
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	2 cut(s)	459, 576
BfaI	CTAG	4 cut(s)	167, 260, 803, 1019
BfmI	CTRYAG	3 cut(s)	435, 617, 702
BfuAI	ACCTGC	1 cut(s)	440
BglI	GCCNNNNNGGC	1 cut(s)	681
BisI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 425, 438, 732, 771
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	9 cut(s)	8, 37, 106, 325, 328, 426, 439, 733, 772
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	176, 479, 501
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	6 cut(s)	176, 479, 501, 741, 842, 1056
BmiI	GGNNCC	2 cut(s)	454, 568
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	872
Bpu1102I	GCTNAGC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 738, 750, 877, 1012
Bse1I	ACTGG	3 cut(s)	266, 415, 474
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	3 cut(s)	90, 405, 760
BseLI	CCNNNNNNNGG	5 cut(s)	16, 738, 750, 877, 1012
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	3 cut(s)	266, 415, 474
BseSI	GKGCMC	2 cut(s)	571, 686
BseXI	GCAGC	7 cut(s)	22, 91, 335, 338, 411, 449, 782
BseYI	CCCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	6 cut(s)	9, 211, 743, 843, 966, 1058
BshNI	GGYRCC	2 cut(s)	452, 566
BsiHKAI	GWGCWC	4 cut(s)	138, 252, 654, 902
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	852, 988
BslI	CCNNNNNNNGG	5 cut(s)	16, 738, 750, 877, 1012
BsmFI	GGGAC	2 cut(s)	852, 988
BsnI	GGCC	6 cut(s)	9, 211, 743, 843, 966, 1058
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	6 cut(s)	138, 252, 571, 654, 686, 902
Bsp143I	GATC	2 cut(s)	459, 576
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	2 cut(s)	6, 732
BspANI	GGCC	6 cut(s)	9, 211, 743, 843, 966, 1058
BspCNI	CTCAG	1 cut(s)	640
BspHI	TCATGA	3 cut(s)	462, 609, 894
BspLI	GGNNCC	2 cut(s)	454, 568
BspMAI	CTGCAG	2 cut(s)	439, 621
BspMI	ACCTGC	1 cut(s)	440
BspT107I	GGYRCC	2 cut(s)	452, 566
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	266, 415, 474
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	459, 576
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	149, 445, 782
Bst6I	CTCTTC	1 cut(s)	1005
BstAPI	GCANNNNNTGC	2 cut(s)	320, 446
BstC8I	GCNNGC	2 cut(s)	78, 257
BstDEI	CTNAG	5 cut(s)	49, 377, 632, 648, 872
BstF5I	GGATG	3 cut(s)	90, 405, 760
BstKTI	GATC	2 cut(s)	462, 579
BstMBI	GATC	2 cut(s)	459, 576
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 256, 320, 411, 446, 681, 740
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	3 cut(s)	435, 617, 702
BstSLI	GKGCMC	2 cut(s)	571, 686
BstV1I	GCAGC	7 cut(s)	22, 91, 335, 338, 411, 449, 782
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	6 cut(s)	9, 211, 743, 843, 966, 1058
BtsCI	GGATG	3 cut(s)	90, 405, 760
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	5 cut(s)	192, 273, 422, 467, 787
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	78, 257
CciI	TCATGA	3 cut(s)	462, 609, 894
Cfr13I	GGNCC	6 cut(s)	176, 479, 501, 741, 842, 1056
CseI	GACGC	1 cut(s)	1071
Csp6I	GTAC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	8 cut(s)	11, 402, 457, 463, 610, 715, 877, 895
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	49, 377, 632, 648, 872
DpnI	GATC	2 cut(s)	461, 578
DpnII	GATC	2 cut(s)	459, 576
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Ecl136II	GAGCTC	2 cut(s)	652, 900
Eco24I	GRGCYC	2 cut(s)	654, 902
Eco47I	GGWCC	3 cut(s)	176, 479, 501
Eco53kI	GAGCTC	2 cut(s)	652, 900
Eco57I	CTGAAG	1 cut(s)	1049
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	2 cut(s)	652, 900
EcoO109I	RGGNCCY	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	654, 902
FaeI	CATG	8 cut(s)	14, 405, 460, 466, 613, 718, 880, 898
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 468, 500
FaqI	GGGAC	2 cut(s)	852, 988
FatI	CATG	8 cut(s)	10, 401, 456, 462, 609, 714, 876, 894
FbaI	TGATCA	2 cut(s)	459, 576
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 425, 438, 732, 771
FokI	GGATG	3 cut(s)	97, 392, 767
FriOI	GRGCYC	2 cut(s)	654, 902
Fsp4HI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 425, 438, 732, 771
FspBI	CTAG	4 cut(s)	167, 260, 803, 1019
GluI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 425, 438, 732, 771
GsaI	CCCAGC	1 cut(s)	601
HaeIII	GGCC	6 cut(s)	9, 211, 743, 843, 966, 1058
HgaI	GACGC	1 cut(s)	1071
Hin1II	CATG	8 cut(s)	14, 405, 460, 466, 613, 718, 880, 898
HinfI	GANTC	3 cut(s)	27, 373, 613
HphI	GGTGA	2 cut(s)	133, 226
Hpy166II	GTNNAC	3 cut(s)	145, 306, 778
Hpy188I	TCNGA	2 cut(s)	410, 431
Hpy188III	TCNNGA	6 cut(s)	194, 385, 463, 610, 798, 895
Hpy8I	GTNNAC	3 cut(s)	145, 306, 778
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	686, 913, 927
HpyCH4III	ACNGT	3 cut(s)	149, 445, 782
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 256, 320, 411, 446, 681, 740
HpyF3I	CTNAG	5 cut(s)	49, 377, 632, 648, 872
Hsp92II	CATG	8 cut(s)	14, 405, 460, 466, 613, 718, 880, 898
Ksp22I	TGATCA	2 cut(s)	459, 576
Kzo9I	GATC	2 cut(s)	459, 576
LmnI	GCTCC	1 cut(s)	905
Lsp1109I	GCAGC	7 cut(s)	22, 91, 335, 338, 411, 449, 782
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	4 cut(s)	167, 260, 803, 1019
MaeIII	GTNAC	4 cut(s)	149, 518, 853, 936
MalI	GATC	2 cut(s)	461, 578
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	459, 576
MboII	GAAGA	4 cut(s)	223, 335, 1022, 1055
MfeI	CAATTG	2 cut(s)	920, 1077
MhlI	GDGCHC	6 cut(s)	138, 252, 571, 654, 686, 902
MluCI	AATT	8 cut(s)	14, 68, 280, 395, 558, 761, 920, 1077
MnlI	CCTC	4 cut(s)	109, 833, 1006, 1036
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	2 cut(s)	111, 561
MslI	CAYNNNNRTG	2 cut(s)	461, 753
MspA1I	CMGCKG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	2 cut(s)	920, 1077
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	7 cut(s)	73, 256, 320, 411, 446, 681, 740
NdeII	GATC	2 cut(s)	459, 576
NlaIII	CATG	8 cut(s)	14, 405, 460, 466, 613, 718, 880, 898
NlaIV	GGNNCC	2 cut(s)	454, 568
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	149, 853
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	383
PagI	TCATGA	3 cut(s)	462, 609, 894
PaqCI	CACCTGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	27, 373, 613
PflMI	CCANNNNNTGG	2 cut(s)	16, 750
PkrI	GCNGC	9 cut(s)	8, 37, 106, 325, 328, 426, 439, 733, 772
Psp124BI	GAGCTC	2 cut(s)	654, 902
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	454, 568
PspPI	GGNCC	6 cut(s)	176, 479, 501, 741, 842, 1056
PstI	CTGCAG	2 cut(s)	439, 621
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	461, 753
SacI	GAGCTC	2 cut(s)	654, 902
SaqAI	TTAA	2 cut(s)	111, 561
SatI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 425, 438, 732, 771
Sau3AI	GATC	2 cut(s)	459, 576
Sau96I	GGNCC	6 cut(s)	176, 479, 501, 741, 842, 1056
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	6 cut(s)	138, 252, 571, 654, 686, 902
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	3 cut(s)	435, 617, 702
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	3 cut(s)	176, 479, 501
SlaI	CTCGAG	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	461, 753
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	8 cut(s)	14, 68, 280, 395, 558, 761, 920, 1077
SsiI	CCGC	2 cut(s)	6, 732
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	4 cut(s)	167, 260, 803, 1019
SstI	GAGCTC	2 cut(s)	654, 902
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	149, 445, 782
TaqI	TCGA	2 cut(s)	384, 623
TasI	AATT	8 cut(s)	14, 68, 280, 395, 558, 761, 920, 1077
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	9, 734
TfiI	GAWTC	3 cut(s)	27, 373, 613
Tru1I	TTAA	2 cut(s)	111, 561
Tru9I	TTAA	2 cut(s)	111, 561
TscAI	CASTG	5 cut(s)	192, 273, 422, 474, 787
TseFI	GTSAC	2 cut(s)	149, 853
TseI	GCWGC	7 cut(s)	35, 104, 323, 326, 424, 437, 770
Tsp45I	GTSAC	2 cut(s)	149, 853
TspDTI	ATGAA	6 cut(s)	27, 314, 539, 598, 845, 895
TspRI	CASTG	5 cut(s)	192, 273, 422, 474, 787
Van91I	CCANNNNNTGG	2 cut(s)	16, 750
VpaK11BI	GGWCC	3 cut(s)	176, 479, 501
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	4 cut(s)	167, 260, 803, 1019
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.