Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010067

Physical Location & Seq

Genomic Coordinates Reverse (-)

36045454 .. 36047601

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGCAGCCATGGATTGGTTGAAAGATTCAAGGCTGCAAAGCCTTTCTTTGCTGTTGCTTTCTTGCAATTTGGGCTTGCAGGGATGGATATTCTTTGCAAGGCTGCACTTAACCAGGGGGTGAGCAACTATGTGCTCGTCGTCTACCGCCATGCAGTTGCCACTCTAGTTGTTGCTCCTTTTGCAGTGGTTCTGGACAAAAAAGTAAGGCCAAAGATGACACTTTCAATCTTCATCAAGATAATGGTGCTCGGCTTGCTAGAGCCAGTTCTTGACCAAAATATGTATTACCTGGGAATGAAGTACACAACAGCAACCTTTGCAGCAGCTATGTCCAATATTCTTCCTGCCCTTACTTTTGTAATGGCTTGGATTCTTAGGCTTGAGAAAGTAAAATTGAAATGCATCCGAAGCCAAAGTAAGGTGCTCGGAACTGCAGCAACAGTTGCAGGTGCCATGATCATGACACTGGTAAAAGGACCACTTTTGAAGTTGTTTTGGACCAGAGCAACCACTAGTAACCAACAGCAAACAAATGGGGTAGATATTCACAGTTCAATTAAGGGTGCCCTAATGATCACAGCTGGTTGCTTCTGCTGGGCTTGTTTCATGATTCTGCAGTCAGTGACACTAAGATCATACCCTGCTGAGCTCTCCCTTTCAGCTTGGATATGCCTGATGGGCACATTGGAAGGAACTGCTGTAGCATTAGTCATGGAAAGGGGAAACGCTGCCGTTTGGGCTATACATTGGGACGGAAAATTATTGGCAGCTGTCTACAGTGTAAGAATATTGAACCATTTGCGTGTAAAGCTAAATCAGAGTGCGAATAACATTGCCCTATACTCATATATTCATTCTGCGCAGGGAATATTCTGTTCAGGACTAGCTTATTACATTCAAGGAGTAGTAATGAAACACAGGGGCCCTGTGTTTGTGACAGCTTTTAGTCCCCTAAGCATGGTTATTGTTGCTGTCATGAGCTCCTTCATTTTGCGAGAGCAGTTGTTTCTTGGAAGGTTACTTGGTGCTGCTGTCATAATCATCGGCCTGTATCTTGTTGTATGGGGTAAGAGCAAAGAGAATTCCCCAGAAGAGGAACTAGCAACAACTAAACAAGTAGGAGCGGAAAAGGATAGGTCCAATCTTGAGGTTATCACAATTGCATCATCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

393

Amino Acids

42.96

Weight (kDa)

9.63

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	24 - 156	2.4e-10	EamA-like transporter family
EamA	PF00892	188 - 355	1.2e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37450 AT2G37450 AT2G37450 AT2G37460
fragaria_vesca	FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370
malus_domestica	MD04G1120400.v1.1
prunus_persica	Prupe.6G249600_v2.0.a1
pyrus_communis	pycom04g10950
rosa_chinensis	RchiOBHm_Chr3g0467431
rosa_laevigata	RLG00000024505
rosa_multiflora	Rmu_sc0001601.1_g000006
rosa_roxburghii	Rroxscaffold_6G00413680
rosa_rugosa	Rorug03G0086900
rosa_samantha	Rh3BG157000 Rh3CG156900 Rh3DG157800
rosa_wichuraiana	Rw3G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	2 cut(s)	452, 566
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccBSI	CCGCTC	1 cut(s)	1127
AccI	GTMKAC	2 cut(s)	144, 777
AciI	CCGC	2 cut(s)	148, 1127
AcsI	RAATTY	1 cut(s)	1084
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	16, 421, 961, 1096
AgsI	TTSAA	8 cut(s)	23, 31, 228, 400, 490, 558, 796, 902
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	114, 291
AluBI	AGCT	9 cut(s)	329, 584, 652, 665, 773, 814, 890, 944, 984
AluI	AGCT	9 cut(s)	329, 584, 652, 665, 773, 814, 890, 944, 984
Alw21I	GWGCWC	5 cut(s)	138, 252, 429, 654, 986
AoxI	GGCC	3 cut(s)	209, 925, 1048
ApaI	GGGCCC	1 cut(s)	929
ApeKI	GCWGC	9 cut(s)	6, 35, 104, 323, 326, 437, 731, 770, 1031
ApoI	RAATTY	1 cut(s)	1084
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	5 cut(s)	479, 501, 925, 926, 1140
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	3 cut(s)	479, 501, 1140
BaeGI	GKGCMC	3 cut(s)	571, 686, 929
BanI	GGYRCC	2 cut(s)	452, 566
BanII	GRGCYC	3 cut(s)	654, 929, 986
Bbv12I	GWGCWC	5 cut(s)	138, 252, 429, 654, 986
BbvI	GCAGC	9 cut(s)	18, 22, 91, 335, 338, 449, 718, 782, 1018
BccI	CCATC	2 cut(s)	79, 673
BceAI	ACGGC	1 cut(s)	719
BciT130I	CCWGG	2 cut(s)	116, 293
BclI	TGATCA	2 cut(s)	459, 576
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	5 cut(s)	167, 260, 516, 887, 1103
BfmI	CTRYAG	4 cut(s)	435, 617, 702, 778
BfuAI	ACCTGC	1 cut(s)	440
BglI	GCCNNNNNGGC	2 cut(s)	681, 740
BisI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 438, 732, 771, 1032
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	9 cut(s)	8, 37, 106, 325, 328, 439, 733, 772, 1033
Bme1390I	CCNGG	2 cut(s)	116, 293
Bme18I	GGWCC	3 cut(s)	479, 501, 1140
BmgT120I	GGNCC	5 cut(s)	479, 501, 925, 926, 1140
BmiI	GGNNCC	4 cut(s)	454, 568, 926, 927
BmrFI	CCNGG	2 cut(s)	116, 293
BmsI	GCATC	2 cut(s)	414, 1175
Bpu10I	CCTNAGC	1 cut(s)	956
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	404, 1169
BsaJI	CCNNGG	3 cut(s)	10, 115, 292
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 421, 961, 1096
Bse1I	ACTGG	2 cut(s)	266, 474
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	116, 293
BseDI	CCNNGG	3 cut(s)	10, 115, 292
BseGI	GGATG	2 cut(s)	90, 405
BseLI	CCNNNNNNNGG	4 cut(s)	16, 421, 961, 1096
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	266, 474
BseSI	GKGCMC	3 cut(s)	571, 686, 929
BseXI	GCAGC	9 cut(s)	18, 22, 91, 335, 338, 449, 718, 782, 1018
BseYI	CCCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	211, 927, 1050
BshNI	GGYRCC	2 cut(s)	452, 566
BsiHKAI	GWGCWC	5 cut(s)	138, 252, 429, 654, 986
BslFI	GGGAC	2 cut(s)	767, 936
BslI	CCNNNNNNNGG	4 cut(s)	16, 421, 961, 1096
BsmFI	GGGAC	2 cut(s)	767, 936
BsnI	GGCC	3 cut(s)	211, 927, 1050
Bsp120I	GGGCCC	1 cut(s)	925
Bsp1286I	GDGCHC	8 cut(s)	138, 252, 429, 571, 654, 686, 929, 986
Bsp143I	GATC	3 cut(s)	459, 576, 635
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	2 cut(s)	148, 1127
BspANI	GGCC	3 cut(s)	211, 927, 1050
BspCNI	CTCAG	1 cut(s)	640
BspHI	TCATGA	3 cut(s)	462, 609, 978
BspLI	GGNNCC	4 cut(s)	454, 568, 926, 927
BspMAI	CTGCAG	2 cut(s)	439, 621
BspMI	ACCTGC	1 cut(s)	440
BspT107I	GGYRCC	2 cut(s)	452, 566
BsrBI	CCGCTC	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	266, 474
BssECI	CCNNGG	3 cut(s)	10, 115, 292
BssMI	GATC	3 cut(s)	459, 576, 635
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	116, 293
Bst4CI	ACNGT	3 cut(s)	445, 554, 782
Bst6I	CTCTTC	1 cut(s)	1089
BstAPI	GCANNNNNTGC	2 cut(s)	320, 446
BstC8I	GCNNGC	2 cut(s)	78, 257
BstDEI	CTNAG	4 cut(s)	377, 632, 648, 956
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	90, 405
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	3 cut(s)	462, 579, 638
BstMBI	GATC	3 cut(s)	459, 576, 635
BstMWI	GCNNNNNNNGC	9 cut(s)	73, 182, 256, 320, 411, 446, 681, 740, 811
BstNI	CCWGG	2 cut(s)	116, 293
BstSCI	CCNGG	2 cut(s)	114, 291
BstSFI	CTRYAG	4 cut(s)	435, 617, 702, 778
BstSLI	GKGCMC	3 cut(s)	571, 686, 929
BstV1I	GCAGC	9 cut(s)	18, 22, 91, 335, 338, 449, 718, 782, 1018
BsuRI	GGCC	3 cut(s)	211, 927, 1050
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	90, 405
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	4 cut(s)	192, 467, 630, 787
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	78, 257
CciI	TCATGA	3 cut(s)	462, 609, 978
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	5 cut(s)	479, 501, 925, 926, 1140
Csp6I	GTAC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	8 cut(s)	11, 152, 457, 463, 610, 715, 961, 979
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	377, 632, 648, 956
DpnI	GATC	3 cut(s)	461, 578, 637
DpnII	GATC	3 cut(s)	459, 576, 635
Eam1104I	CTCTTC	1 cut(s)	1089
EarI	CTCTTC	1 cut(s)	1089
Ecl136II	GAGCTC	2 cut(s)	652, 984
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	3 cut(s)	654, 929, 986
Eco47I	GGWCC	3 cut(s)	479, 501, 1140
Eco53kI	GAGCTC	2 cut(s)	652, 984
EcoICRI	GAGCTC	2 cut(s)	652, 984
EcoO109I	RGGNCCY	2 cut(s)	925, 926
EcoRI	GAATTC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	114, 291
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	3 cut(s)	654, 929, 986
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	8 cut(s)	14, 155, 460, 466, 613, 718, 964, 982
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 468, 500
FaqI	GGGAC	2 cut(s)	767, 936
FatI	CATG	8 cut(s)	10, 151, 456, 462, 609, 714, 960, 978
FbaI	TGATCA	2 cut(s)	459, 576
FblI	GTMKAC	2 cut(s)	144, 777
Fnu4HI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 438, 732, 771, 1032
FokI	GGATG	2 cut(s)	97, 392
FriOI	GRGCYC	3 cut(s)	654, 929, 986
Fsp4HI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 438, 732, 771, 1032
FspBI	CTAG	5 cut(s)	167, 260, 516, 887, 1103
FspI	TGCGCA	1 cut(s)	864
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 438, 732, 771, 1032
GsaI	CCCAGC	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	211, 927, 1050
HhaI	GCGC	1 cut(s)	865
Hin1II	CATG	8 cut(s)	14, 155, 460, 466, 613, 718, 964, 982
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HinfI	GANTC	3 cut(s)	27, 373, 613
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	145, 306, 778
Hpy188I	TCNGA	3 cut(s)	410, 431, 822
Hpy188III	TCNNGA	8 cut(s)	194, 238, 272, 463, 610, 882, 979, 1148
Hpy8I	GTNNAC	3 cut(s)	145, 306, 778
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	686, 997, 1011
HpyCH4III	ACNGT	3 cut(s)	445, 554, 782
HpyF10VI	GCNNNNNNNGC	9 cut(s)	73, 182, 256, 320, 411, 446, 681, 740, 811
HpyF3I	CTNAG	4 cut(s)	377, 632, 648, 956
Hsp92II	CATG	8 cut(s)	14, 155, 460, 466, 613, 718, 964, 982
HspAI	GCGC	1 cut(s)	863
Ksp22I	TGATCA	2 cut(s)	459, 576
Kzo9I	GATC	3 cut(s)	459, 576, 635
LmnI	GCTCC	3 cut(s)	181, 989, 1124
Lsp1109I	GCAGC	9 cut(s)	18, 22, 91, 335, 338, 449, 718, 782, 1018
LweI	GCATC	2 cut(s)	414, 1175
MaeI	CTAG	5 cut(s)	167, 260, 516, 887, 1103
MaeIII	GTNAC	4 cut(s)	518, 625, 937, 1020
MalI	GATC	3 cut(s)	461, 578, 637
MbiI	CCGCTC	1 cut(s)	1127
MboI	GATC	3 cut(s)	459, 576, 635
MboII	GAAGA	3 cut(s)	223, 335, 1106
MfeI	CAATTG	1 cut(s)	1161
MhlI	GDGCHC	8 cut(s)	138, 252, 429, 571, 654, 686, 929, 986
MluCI	AATT	6 cut(s)	68, 395, 558, 761, 1084, 1161
MnlI	CCTC	2 cut(s)	1090, 1144
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	2 cut(s)	111, 561
MslI	CAYNNNNRTG	2 cut(s)	461, 804
MspA1I	CMGCKG	2 cut(s)	584, 773
MspR9I	CCNGG	2 cut(s)	116, 293
MunI	CAATTG	1 cut(s)	1161
MvaI	CCWGG	2 cut(s)	116, 293
MwoI	GCNNNNNNNGC	9 cut(s)	73, 182, 256, 320, 411, 446, 681, 740, 811
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	459, 576, 635
NlaIII	CATG	8 cut(s)	14, 155, 460, 466, 613, 718, 964, 982
NlaIV	GGNNCC	4 cut(s)	454, 568, 926, 927
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	625, 937
NsbI	TGCGCA	1 cut(s)	864
NsiI	ATGCAT	1 cut(s)	407
PagI	TCATGA	3 cut(s)	462, 609, 978
PaqCI	CACCTGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	27, 373, 613
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	9 cut(s)	8, 37, 106, 325, 328, 439, 733, 772, 1033
Psp124BI	GAGCTC	2 cut(s)	654, 986
Psp6I	CCWGG	2 cut(s)	114, 291
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	2 cut(s)	114, 291
PspN4I	GGNNCC	4 cut(s)	454, 568, 926, 927
PspOMI	GGGCCC	1 cut(s)	925
PspPI	GGNCC	5 cut(s)	479, 501, 925, 926, 1140
PstI	CTGCAG	2 cut(s)	439, 621
PvuII	CAGCTG	2 cut(s)	584, 773
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	461, 804
SacI	GAGCTC	2 cut(s)	654, 986
SaqAI	TTAA	2 cut(s)	111, 561
SatI	GCNGC	9 cut(s)	7, 36, 105, 324, 327, 438, 732, 771, 1032
Sau3AI	GATC	3 cut(s)	459, 576, 635
Sau96I	GGNCC	5 cut(s)	479, 501, 925, 926, 1140
ScrFI	CCNGG	2 cut(s)	116, 293
SduI	GDGCHC	8 cut(s)	138, 252, 429, 571, 654, 686, 929, 986
SfaNI	GCATC	2 cut(s)	414, 1175
SfcI	CTRYAG	4 cut(s)	435, 617, 702, 778
SinI	GGWCC	3 cut(s)	479, 501, 1140
SmiMI	CAYNNNNRTG	2 cut(s)	461, 804
SmlI	CTYRAG	2 cut(s)	383, 1148
SmoI	CTYRAG	2 cut(s)	383, 1148
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	6 cut(s)	68, 395, 558, 761, 1084, 1161
SsiI	CCGC	2 cut(s)	148, 1127
SspI	AATATT	3 cut(s)	340, 792, 873
SspMI	CTAG	5 cut(s)	167, 260, 516, 887, 1103
SstI	GAGCTC	2 cut(s)	654, 986
StyD4I	CCNGG	2 cut(s)	114, 291
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	445, 554, 782
TasI	AATT	6 cut(s)	68, 395, 558, 761, 1084, 1161
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	27, 373, 613
Tru1I	TTAA	2 cut(s)	111, 561
Tru9I	TTAA	2 cut(s)	111, 561
TscAI	CASTG	4 cut(s)	192, 474, 630, 787
TseFI	GTSAC	2 cut(s)	625, 937
TseI	GCWGC	9 cut(s)	6, 35, 104, 323, 326, 437, 731, 770, 1031
Tsp45I	GTSAC	2 cut(s)	625, 937
TspDTI	ATGAA	6 cut(s)	223, 314, 598, 845, 929, 979
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	4 cut(s)	192, 474, 630, 787
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	479, 501, 1140
XapI	RAATTY	1 cut(s)	1084
XmiI	GTMKAC	2 cut(s)	144, 777
XspI	CTAG	5 cut(s)	167, 260, 516, 887, 1103
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.