Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001601.1

Orthogroup ID

OG0010067

Physical Location & Seq

Genomic Coordinates Reverse (-)

32098 .. 33975

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001601.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgagcagccatggattggttgaaagattgaaggctgcaaagcctttctttgctgttgttttcttgcaatttgggcttgcagggatggatattctttgcaaggctgcacttaaccaggggaaaagtaaggccaaagatgacactttcaatcttcatcaagataatggtgctcggcttgctagagtaattttctggatttcttgctatacaaggccagttcttgaccaaaatatgtattacttgggaatgaagtacacaacagcaacctttgcagcagctatgtgcaatattcttcctgcccttacttttgtaatggcttggattcttaggcttgagaaagtaaaattgaaatgcatccgaagccaaagtaaggtgctaggaactgcagcaacagttgcaggtgccatgatcatgacactggtaaaaggaccacttttgaagttgttttggaccagagcaaccactagtaaccaacagcaaacaaatggggtagatattcacagttcaattaagggtgccataatgatcacagttggttgcttctgctgggcttgtttcatgattctgcagtcagtgacactaagatcataccctgctgagctctccctttcagcttggatatgcctgatgggcacattggaaggaactgctgtagcattagtcatggaaaggggaaacgctgccgtttgggctatacattgggacggaaaattattggcagctgtctacagtggaatattctgttcaggactagcttattacattcaaggagtagtaatgaaacacaggggccctgtgtttgtgacagcttttagtcccctaagcatggttattgttgctgtcatgagctccttcattttgcgagagcagttgtttcttggaaggttacttggtgctgctgtcataatcatcggcctgtatcttgttgtatggggtaagagcaaagagaattccccagaagaggaactagcaacaactaaacaagtaggagaggaaaaagataggtccaatcttgaggttatcacaattgcatcatcttgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

348

Amino Acids

38.14

Weight (kDa)

9.32

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37450 AT2G37450 AT2G37450 AT2G37460
fragaria_vesca	FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370
malus_domestica	MD04G1120400.v1.1
prunus_persica	Prupe.6G249600_v2.0.a1
pyrus_communis	pycom04g10950
rosa_chinensis	RchiOBHm_Chr3g0467431
rosa_laevigata	RLG00000024505
rosa_multiflora	Rmu_sc0001601.1_g000006
rosa_roxburghii	Rroxscaffold_6G00413680
rosa_rugosa	Rorug03G0086900
rosa_samantha	Rh3BG157000 Rh3CG156900 Rh3DG157800
rosa_wichuraiana	Rw3G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccB1I	GGYRCC	2 cut(s)	401, 515
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	949
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	16, 370, 826, 961
AgsI	TTSAA	7 cut(s)	23, 31, 148, 349, 439, 507, 767
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	7 cut(s)	278, 601, 614, 722, 755, 809, 849
AluI	AGCT	7 cut(s)	278, 601, 614, 722, 755, 809, 849
Alw21I	GWGCWC	3 cut(s)	172, 603, 851
AoxI	GGCC	4 cut(s)	129, 212, 790, 913
ApaI	GGGCCC	1 cut(s)	794
ApeKI	GCWGC	9 cut(s)	6, 35, 104, 272, 275, 386, 680, 719, 896
ApoI	RAATTY	1 cut(s)	949
AspS9I	GGNCC	5 cut(s)	428, 450, 790, 791, 1005
AvaII	GGWCC	3 cut(s)	428, 450, 1005
BaeGI	GKGCMC	2 cut(s)	635, 794
BanI	GGYRCC	2 cut(s)	401, 515
BanII	GRGCYC	3 cut(s)	603, 794, 851
Bbv12I	GWGCWC	3 cut(s)	172, 603, 851
BbvI	GCAGC	9 cut(s)	18, 22, 91, 284, 287, 398, 667, 731, 883
BccI	CCATC	2 cut(s)	79, 622
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	2 cut(s)	408, 525
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	5 cut(s)	180, 377, 465, 752, 968
BfmI	CTRYAG	4 cut(s)	384, 566, 651, 727
BfuAI	ACCTGC	1 cut(s)	389
BglI	GCCNNNNNGGC	2 cut(s)	630, 689
BisI	GCNGC	9 cut(s)	7, 36, 105, 273, 276, 387, 681, 720, 897
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	9 cut(s)	8, 37, 106, 274, 277, 388, 682, 721, 898
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	3 cut(s)	428, 450, 1005
BmgT120I	GGNCC	5 cut(s)	428, 450, 790, 791, 1005
BmiI	GGNNCC	4 cut(s)	403, 517, 791, 792
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	363, 1040
Bpu10I	CCTNAGC	1 cut(s)	821
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	353, 1034
BsaJI	CCNNGG	2 cut(s)	10, 115
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 370, 826, 961
Bse1I	ACTGG	2 cut(s)	215, 423
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	10, 115
BseGI	GGATG	2 cut(s)	90, 354
BseLI	CCNNNNNNNGG	4 cut(s)	16, 370, 826, 961
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	215, 423
BseSI	GKGCMC	2 cut(s)	635, 794
BseXI	GCAGC	9 cut(s)	18, 22, 91, 284, 287, 398, 667, 731, 883
BseYI	CCCAGC	1 cut(s)	546
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	131, 214, 792, 915
BshNI	GGYRCC	2 cut(s)	401, 515
BsiHKAI	GWGCWC	3 cut(s)	172, 603, 851
BslFI	GGGAC	2 cut(s)	716, 801
BslI	CCNNNNNNNGG	4 cut(s)	16, 370, 826, 961
BsmFI	GGGAC	2 cut(s)	716, 801
BsnI	GGCC	4 cut(s)	131, 214, 792, 915
Bsp120I	GGGCCC	1 cut(s)	790
Bsp1286I	GDGCHC	5 cut(s)	172, 603, 635, 794, 851
Bsp143I	GATC	3 cut(s)	408, 525, 584
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	10
BspANI	GGCC	4 cut(s)	131, 214, 792, 915
BspCNI	CTCAG	1 cut(s)	589
BspHI	TCATGA	3 cut(s)	411, 558, 843
BspLI	GGNNCC	4 cut(s)	403, 517, 791, 792
BspMAI	CTGCAG	2 cut(s)	388, 570
BspMI	ACCTGC	1 cut(s)	389
BspT107I	GGYRCC	2 cut(s)	401, 515
BsrI	ACTGG	2 cut(s)	215, 423
BssECI	CCNNGG	2 cut(s)	10, 115
BssMI	GATC	3 cut(s)	408, 525, 584
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	4 cut(s)	394, 503, 532, 731
Bst6I	CTCTTC	1 cut(s)	954
BstAPI	GCANNNNNTGC	2 cut(s)	269, 395
BstC8I	GCNNGC	2 cut(s)	78, 177
BstDEI	CTNAG	4 cut(s)	326, 581, 597, 821
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	90, 354
BstKTI	GATC	3 cut(s)	411, 528, 587
BstMBI	GATC	3 cut(s)	408, 525, 584
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 176, 269, 360, 395, 630, 689
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	4 cut(s)	384, 566, 651, 727
BstSLI	GKGCMC	2 cut(s)	635, 794
BstV1I	GCAGC	9 cut(s)	18, 22, 91, 284, 287, 398, 667, 731, 883
BsuRI	GGCC	4 cut(s)	131, 214, 792, 915
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	90, 354
BtsIMutI	CAGTG	3 cut(s)	416, 579, 736
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	78, 177
CciI	TCATGA	3 cut(s)	411, 558, 843
Cfr13I	GGNCC	5 cut(s)	428, 450, 790, 791, 1005
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	7 cut(s)	11, 406, 412, 559, 664, 826, 844
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	4 cut(s)	326, 581, 597, 821
DpnI	GATC	3 cut(s)	410, 527, 586
DpnII	GATC	3 cut(s)	408, 525, 584
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Ecl136II	GAGCTC	2 cut(s)	601, 849
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	3 cut(s)	603, 794, 851
Eco47I	GGWCC	3 cut(s)	428, 450, 1005
Eco53kI	GAGCTC	2 cut(s)	601, 849
EcoICRI	GAGCTC	2 cut(s)	601, 849
EcoO109I	RGGNCCY	2 cut(s)	790, 791
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	356
EcoT38I	GRGCYC	3 cut(s)	603, 794, 851
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	7 cut(s)	14, 409, 415, 562, 667, 829, 847
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 417, 449
FaqI	GGGAC	2 cut(s)	716, 801
FatI	CATG	7 cut(s)	10, 405, 411, 558, 663, 825, 843
FbaI	TGATCA	2 cut(s)	408, 525
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	9 cut(s)	7, 36, 105, 273, 276, 387, 681, 720, 897
FokI	GGATG	2 cut(s)	97, 341
FriOI	GRGCYC	3 cut(s)	603, 794, 851
Fsp4HI	GCNGC	9 cut(s)	7, 36, 105, 273, 276, 387, 681, 720, 897
FspBI	CTAG	5 cut(s)	180, 377, 465, 752, 968
GluI	GCNGC	9 cut(s)	7, 36, 105, 273, 276, 387, 681, 720, 897
GsaI	CCCAGC	1 cut(s)	550
HaeIII	GGCC	4 cut(s)	131, 214, 792, 915
Hin1II	CATG	7 cut(s)	14, 409, 415, 562, 667, 829, 847
HinfI	GANTC	2 cut(s)	322, 562
Hpy166II	GTNNAC	2 cut(s)	255, 727
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	8 cut(s)	158, 193, 221, 412, 559, 747, 844, 1013
Hpy8I	GTNNAC	2 cut(s)	255, 727
HpyAV	CCTTC	4 cut(s)	25, 635, 862, 876
HpyCH4III	ACNGT	4 cut(s)	394, 503, 532, 731
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 176, 269, 360, 395, 630, 689
HpyF3I	CTNAG	4 cut(s)	326, 581, 597, 821
Hsp92II	CATG	7 cut(s)	14, 409, 415, 562, 667, 829, 847
Ksp22I	TGATCA	2 cut(s)	408, 525
Kzo9I	GATC	3 cut(s)	408, 525, 584
LmnI	GCTCC	1 cut(s)	854
Lsp1109I	GCAGC	9 cut(s)	18, 22, 91, 284, 287, 398, 667, 731, 883
LweI	GCATC	2 cut(s)	363, 1040
MaeI	CTAG	5 cut(s)	180, 377, 465, 752, 968
MaeIII	GTNAC	4 cut(s)	467, 574, 802, 885
MalI	GATC	3 cut(s)	410, 527, 586
MboI	GATC	3 cut(s)	408, 525, 584
MboII	GAAGA	3 cut(s)	143, 284, 971
MfeI	CAATTG	1 cut(s)	1026
MhlI	GDGCHC	5 cut(s)	172, 603, 635, 794, 851
MluCI	AATT	7 cut(s)	68, 186, 344, 507, 710, 949, 1026
MnlI	CCTC	3 cut(s)	955, 985, 1009
Mph1103I	ATGCAT	1 cut(s)	356
MseI	TTAA	2 cut(s)	111, 510
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	7 cut(s)	73, 176, 269, 360, 395, 630, 689
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	408, 525, 584
NlaIII	CATG	7 cut(s)	14, 409, 415, 562, 667, 829, 847
NlaIV	GGNNCC	4 cut(s)	403, 517, 791, 792
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	574, 802
NsiI	ATGCAT	1 cut(s)	356
PagI	TCATGA	3 cut(s)	411, 558, 843
PaqCI	CACCTGC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	322, 562
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	9 cut(s)	8, 37, 106, 274, 277, 388, 682, 721, 898
Psp124BI	GAGCTC	2 cut(s)	603, 851
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	403, 517, 791, 792
PspOMI	GGGCCC	1 cut(s)	790
PspPI	GGNCC	5 cut(s)	428, 450, 790, 791, 1005
PstI	CTGCAG	2 cut(s)	388, 570
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	2 cut(s)	603, 851
SaqAI	TTAA	2 cut(s)	111, 510
SatI	GCNGC	9 cut(s)	7, 36, 105, 273, 276, 387, 681, 720, 897
Sau3AI	GATC	3 cut(s)	408, 525, 584
Sau96I	GGNCC	5 cut(s)	428, 450, 790, 791, 1005
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	5 cut(s)	172, 603, 635, 794, 851
SfaNI	GCATC	2 cut(s)	363, 1040
SfcI	CTRYAG	4 cut(s)	384, 566, 651, 727
SinI	GGWCC	3 cut(s)	428, 450, 1005
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	332, 1013
SmoI	CTYRAG	2 cut(s)	332, 1013
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	7 cut(s)	68, 186, 344, 507, 710, 949, 1026
SspI	AATATT	2 cut(s)	289, 738
SspMI	CTAG	5 cut(s)	180, 377, 465, 752, 968
SstI	GAGCTC	2 cut(s)	603, 851
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	4 cut(s)	394, 503, 532, 731
TasI	AATT	7 cut(s)	68, 186, 344, 507, 710, 949, 1026
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	322, 562
Tru1I	TTAA	2 cut(s)	111, 510
Tru9I	TTAA	2 cut(s)	111, 510
TscAI	CASTG	3 cut(s)	423, 579, 736
TseFI	GTSAC	2 cut(s)	574, 802
TseI	GCWGC	9 cut(s)	6, 35, 104, 272, 275, 386, 680, 719, 896
Tsp45I	GTSAC	2 cut(s)	574, 802
TspDTI	ATGAA	5 cut(s)	143, 263, 547, 794, 844
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	3 cut(s)	423, 579, 736
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	428, 450, 1005
XapI	RAATTY	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	5 cut(s)	180, 377, 465, 752, 968
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.