Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010067

Physical Location & Seq

Genomic Coordinates Reverse (-)

13745613 .. 13747187

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10950.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGACGCTTTCGATCTTCATCAAGATAATGCTGCTCGGTTTGCTGGAGCCAGTTCTGGACCAAAATCTGTACTTTACGGGAATGAAGTACACAACAGCAACGTTTGCAGCAGCTATGTGCAATATTCTTCCCGCCCTTACTTTTGTAATGGCTTGGGTTCTTAGGCTTGAGAAAGTGAAATTGAAAAGCATCCGGAGCCAAAGTAAGTTGGTTGGAACTGTAGCAACCGTTGCAGGTGCCATGATCATGACCCTCGTAAAGGGTCCACTTTTGCATTTATTTTGGACCAGACCTAGCCATGAACAGCATACAAGTGCCGCTACTAGCCTCCAAGATTCGATCAAGGGTTCCCTAATGATTACAGTCGGCTGCTTCTGCTGGGCTTGTTTCATGATTCTGCAGGCAATCACACTGAAAACGTACCCAGCTGAGCTCTCCCTTTCCGCTTGGATATGTGCGTTGGGCACACTGGAAGGAGCTGCTGTAGCAGTGGTGATGGAAAGAGGAAATGCTGTCGTCTGGTCCATAAAATGGGATACAAAATTATTGGCAGCTTGTTACAGTGGAATATTCTGTTCAGGACTAGCTTATTACATTCAAGGAGTAGTAATGAAATACAGAGGCCCTGTGTTTGTGACAGCATTCAGTCCCCTGAGCATGGTTATTGTTGCCGTCATGAGCTCCTTCATCCTGCGTGAGCAAATGTTTCTTGGAAGGCTGCTGGGTGCTGCGGTCATAATCGCTGGCCTATATCTCGTTGTATGGGGTAAAGCCAAAGATCACGAGTCCCCGGAAAAAACAATCGGAGATGAATTAACGGCAACGAAGCAAGCACAAGATGAAAAAGCTCTCGAGGTCATCACAATCGCACCATCTTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

295

Amino Acids

32.05

Weight (kDa)

8.96

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37450 AT2G37450 AT2G37450 AT2G37460
fragaria_vesca	FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370 FvH4_6g14370
malus_domestica	MD04G1120400.v1.1
prunus_persica	Prupe.6G249600_v2.0.a1
pyrus_communis	pycom04g10950
rosa_chinensis	RchiOBHm_Chr3g0467431
rosa_laevigata	RLG00000024505
rosa_multiflora	Rmu_sc0001601.1_g000006
rosa_roxburghii	Rroxscaffold_6G00413680
rosa_rugosa	Rorug03G0086900
rosa_samantha	Rh3BG157000 Rh3CG156900 Rh3DG157800
rosa_wichuraiana	Rw3G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	4 cut(s)	132, 318, 444, 731
AclI	AACGTT	1 cut(s)	101
AfaI	GTAC	3 cut(s)	71, 89, 422
AfiI	CCNNNNNNNGG	3 cut(s)	259, 531, 658
AgsI	TTSAA	2 cut(s)	184, 599
AluBI	AGCT	8 cut(s)	113, 428, 433, 479, 554, 587, 681, 848
AluI	AGCT	8 cut(s)	113, 428, 433, 479, 554, 587, 681, 848
Alw21I	GWGCWC	2 cut(s)	435, 683
Ama87I	CYCGRG	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	2 cut(s)	622, 745
ApeKI	GCWGC	8 cut(s)	31, 107, 110, 369, 479, 551, 718, 728
AspS9I	GGNCC	5 cut(s)	58, 263, 285, 522, 623
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	4 cut(s)	58, 263, 285, 522
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	435, 683
BauI	CACGAG	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	435, 683
BbvI	GCAGC	8 cut(s)	18, 119, 122, 356, 466, 563, 705, 715
BccI	CCATC	2 cut(s)	490, 880
BceAI	ACGGC	2 cut(s)	656, 834
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	791
BfaI	CTAG	3 cut(s)	294, 324, 584
BfmI	CTRYAG	3 cut(s)	219, 398, 483
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	9 cut(s)	32, 108, 111, 318, 370, 480, 552, 719, 729
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	9 cut(s)	33, 109, 112, 319, 371, 481, 553, 720, 730
Bme1390I	CCNGG	1 cut(s)	791
Bme18I	GGWCC	4 cut(s)	58, 263, 285, 522
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	5 cut(s)	58, 263, 285, 522, 623
BmiI	GGNNCC	5 cut(s)	48, 197, 238, 264, 349
BmrFI	CCNGG	1 cut(s)	791
BmsI	GCATC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 468, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 531, 658
Bse1I	ACTGG	2 cut(s)	50, 474
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	2 cut(s)	189, 687
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	259, 531, 658
BseMII	CTCAG	2 cut(s)	420, 644
BseNI	ACTGG	2 cut(s)	50, 474
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	8 cut(s)	18, 119, 122, 356, 466, 563, 705, 715
BseYI	CCCAGC	3 cut(s)	378, 424, 721
BshFI	GGCC	2 cut(s)	624, 747
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	435, 683
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	193, 791
BslFI	GGGAC	2 cut(s)	633, 772
BslI	CCNNNNNNNGG	3 cut(s)	259, 531, 658
BsmFI	GGGAC	2 cut(s)	633, 772
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	624, 747
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	3 cut(s)	435, 467, 683
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	12, 243, 339, 778
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	4 cut(s)	132, 318, 444, 731
BspANI	GGCC	2 cut(s)	624, 747
BspCNI	CTCAG	2 cut(s)	421, 645
BspEI	TCCGGA	1 cut(s)	192
BspHI	TCATGA	3 cut(s)	246, 390, 675
BspLI	GGNNCC	5 cut(s)	48, 197, 238, 264, 349
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	50, 474
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	4 cut(s)	12, 243, 339, 778
BssSI	CACGAG	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	220, 229, 364, 563
BstAPI	GCANNNNNTGC	2 cut(s)	104, 230
BstC8I	GCNNGC	3 cut(s)	402, 745, 831
BstDEI	CTNAG	3 cut(s)	161, 429, 653
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	189, 687
BstKTI	GATC	4 cut(s)	15, 246, 342, 781
BstMBI	GATC	4 cut(s)	12, 243, 339, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 104, 195, 230, 375, 485
BstSCI	CCNGG	1 cut(s)	789
BstSFI	CTRYAG	3 cut(s)	219, 398, 483
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	8 cut(s)	18, 119, 122, 356, 466, 563, 705, 715
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	624, 747
BtsCI	GGATG	2 cut(s)	189, 687
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	4 cut(s)	410, 467, 495, 568
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	402, 745, 831
CciI	TCATGA	3 cut(s)	246, 390, 675
Cfr13I	GGNCC	5 cut(s)	58, 263, 285, 522, 623
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	70, 88, 421
CviAII	CATG	6 cut(s)	241, 247, 299, 391, 658, 676
CviQI	GTAC	3 cut(s)	70, 88, 421
DdeI	CTNAG	3 cut(s)	161, 429, 653
DpnI	GATC	4 cut(s)	14, 245, 341, 780
DpnII	GATC	4 cut(s)	12, 243, 339, 778
Ecl136II	GAGCTC	2 cut(s)	433, 681
Eco24I	GRGCYC	2 cut(s)	435, 683
Eco47I	GGWCC	4 cut(s)	58, 263, 285, 522
Eco53kI	GAGCTC	2 cut(s)	433, 681
Eco88I	CYCGRG	1 cut(s)	851
EcoICRI	GAGCTC	2 cut(s)	433, 681
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	623
EcoT38I	GRGCYC	2 cut(s)	435, 683
FaeI	CATG	6 cut(s)	244, 250, 302, 394, 661, 679
FaqI	GGGAC	2 cut(s)	633, 772
FatI	CATG	6 cut(s)	240, 246, 298, 390, 657, 675
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	9 cut(s)	32, 108, 111, 318, 370, 480, 552, 719, 729
FokI	GGATG	2 cut(s)	176, 674
FriOI	GRGCYC	2 cut(s)	435, 683
Fsp4HI	GCNGC	9 cut(s)	32, 108, 111, 318, 370, 480, 552, 719, 729
FspBI	CTAG	3 cut(s)	294, 324, 584
GluI	GCNGC	9 cut(s)	32, 108, 111, 318, 370, 480, 552, 719, 729
GsaI	CCCAGC	3 cut(s)	382, 428, 725
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	624, 747
HapII	CCGG	2 cut(s)	193, 791
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	6 cut(s)	244, 250, 302, 394, 661, 679
HinfI	GANTC	3 cut(s)	335, 394, 785
HpaII	CCGG	2 cut(s)	193, 791
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	90, 266
Hpy188I	TCNGA	1 cut(s)	806
Hpy188III	TCNNGA	9 cut(s)	22, 56, 193, 247, 391, 579, 676, 782, 851
Hpy8I	GTNNAC	2 cut(s)	90, 266
HpyAV	CCTTC	3 cut(s)	467, 694, 708
HpyCH4III	ACNGT	4 cut(s)	220, 229, 364, 563
HpyCH4IV	ACGT	2 cut(s)	101, 419
HpyCH4V	TGCA	6 cut(s)	107, 120, 233, 274, 400, 879
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 104, 195, 230, 375, 485
HpyF3I	CTNAG	3 cut(s)	161, 429, 653
HpySE526I	ACGT	2 cut(s)	101, 419
Hsp92II	CATG	6 cut(s)	244, 250, 302, 394, 661, 679
Kpn2I	TCCGGA	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	12, 243, 339, 778
LmnI	GCTCC	4 cut(s)	46, 195, 476, 686
Lsp1109I	GCAGC	8 cut(s)	18, 119, 122, 356, 466, 563, 705, 715
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	3 cut(s)	294, 324, 584
MaeII	ACGT	2 cut(s)	101, 419
MaeIII	GTNAC	2 cut(s)	557, 634
MalI	GATC	4 cut(s)	14, 245, 341, 780
MboI	GATC	4 cut(s)	12, 243, 339, 778
MboII	GAAGA	2 cut(s)	7, 119
MhlI	GDGCHC	3 cut(s)	435, 467, 683
MluCI	AATT	3 cut(s)	179, 542, 812
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	263, 338, 497, 614, 847
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	1 cut(s)	815
MslI	CAYNNNNRTG	2 cut(s)	245, 312
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	193, 791
MspR9I	CCNGG	1 cut(s)	791
Mva1269I	GAATGC	1 cut(s)	641
MwoI	GCNNNNNNNGC	6 cut(s)	40, 104, 195, 230, 375, 485
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	4 cut(s)	12, 243, 339, 778
NlaIII	CATG	6 cut(s)	244, 250, 302, 394, 661, 679
NlaIV	GGNNCC	5 cut(s)	48, 197, 238, 264, 349
NmuCI	GTSAC	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	851
PagI	TCATGA	3 cut(s)	246, 390, 675
PaqCI	CACCTGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	641
PfeI	GAWTC	2 cut(s)	335, 394
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	9 cut(s)	33, 109, 112, 319, 371, 481, 553, 720, 730
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Psp124BI	GAGCTC	2 cut(s)	435, 683
Psp1406I	AACGTT	1 cut(s)	101
PspFI	CCCAGC	3 cut(s)	378, 424, 721
PspN4I	GGNNCC	5 cut(s)	48, 197, 238, 264, 349
PspPI	GGNCC	5 cut(s)	58, 263, 285, 522, 623
PstI	CTGCAG	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	71, 89, 422
RsaNI	GTAC	3 cut(s)	70, 88, 421
RseI	CAYNNNNRTG	2 cut(s)	245, 312
SacI	GAGCTC	2 cut(s)	435, 683
SaqAI	TTAA	1 cut(s)	815
SatI	GCNGC	9 cut(s)	32, 108, 111, 318, 370, 480, 552, 719, 729
Sau3AI	GATC	4 cut(s)	12, 243, 339, 778
Sau96I	GGNCC	5 cut(s)	58, 263, 285, 522, 623
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	791
SduI	GDGCHC	3 cut(s)	435, 467, 683
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	3 cut(s)	219, 398, 483
Sfr274I	CTCGAG	1 cut(s)	851
SinI	GGWCC	4 cut(s)	58, 263, 285, 522
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	245, 312
SmlI	CTYRAG	2 cut(s)	167, 851
SmoI	CTYRAG	2 cut(s)	167, 851
Sse9I	AATT	3 cut(s)	179, 542, 812
SsiI	CCGC	4 cut(s)	132, 318, 444, 731
SspI	AATATT	2 cut(s)	124, 570
SspMI	CTAG	3 cut(s)	294, 324, 584
SstI	GAGCTC	2 cut(s)	435, 683
StyD4I	CCNGG	1 cut(s)	789
TaaI	ACNGT	4 cut(s)	220, 229, 364, 563
TaiI	ACGT	2 cut(s)	104, 422
TaqI	TCGA	3 cut(s)	11, 338, 852
TasI	AATT	3 cut(s)	179, 542, 812
TatI	WGTACW	2 cut(s)	69, 87
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	335, 394
Tru1I	TTAA	1 cut(s)	815
Tru9I	TTAA	1 cut(s)	815
TscAI	CASTG	4 cut(s)	417, 474, 495, 568
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	8 cut(s)	31, 107, 110, 369, 479, 551, 718, 728
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	8 cut(s)	7, 98, 315, 379, 626, 676, 825, 855
TspRI	CASTG	4 cut(s)	417, 474, 495, 568
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	4 cut(s)	58, 263, 285, 522
XagI	CCTNNNNNAGG	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	851
XspI	CTAG	3 cut(s)	294, 324, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.