FvH4_6g15390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017328
Physical Location & Seq
Forward (+)
9575641 .. 9576570
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15390.t1

Sequence Viewer

Length: 930 bp
ATGGTTGAAAGATGCCTCATAGCAGCTTCTTTGGCAGCTTTGGTTTGCCACCCAAGTTCCACCATAAAATGCTTCAAACCCAAGCCAAGATCACCACAAGAAGACAACCTCAAAGACTCAAAACGACACTTCTCTTCTCCACCAAAAGACCCAAAACGACTTTTAAAGGAAGAAGATGAAGAAAAAGTAATAGTACTGCCTTCAAAACCCCAGAAAAACCTCCACCCTCATCATGCAAGGTGTTCTTCTTCAGAACCTAAGAAGAAGAAGAAACCCATCAAGGCATTTTCGGAGCTTGCTGAGAAAGACCATCCATCAGTTGGGATTGTAGAGAGTGTTGTGAGATCAGGATGGGTTAGTAGTGAAGTAGGCCTCAAGATTGAGAAGGTGTTGAGGGTTAACAATAGTAAAAATGTGCTTCGAAGTTTTGAAGGGTACAGAGAAGACGTGAAAGCTACCTACAAAAAGGGTAGGATTTTAAAGAAGATAGAGAGGTTGGTGGTTGATGGGAATGAGCTTTTGCAATTCCATGGTGCAACAGTTACTTGCTCTCTAGGCATCAATGGTGAGACTAGAGTTTGTCAAAGGAAATGCTGCCAAGTCTGCAGAATGATAGCTTCAGAGTTTTCCGACGATGATGGGACAATGTCGTTCTTCGGGAGCAGCTGGATGGCGCATCAGAAGATGAGCAGGGAGTGCTTGAAGAAAAAGGTGTGTGCAAGGAAGGCTCTGGTGATATGTAGAGTGATTGCTGGCCGAATTGCTCATTTTCATGCGCATGGACTCATGGATAATGATGGGGGTGAGTTTGATTCTGTTATGGCATGGACTGGGGATCAGTTTAGCGATTCGAAAGAGCTCTTGATTTTGAATTCGGAGGCTGTTCTTCCTTGCTTTGTGATCATATACAATGTCGAAAAGCCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.66

Weight (kDa)

9.2

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 777
AccB7I CCANNNNNTGG 1 cut(s) 320
AclWI GGATC 1 cut(s) 843
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 871
AcuI CTGAAG 2 cut(s) 234, 603
AfaI GTAC 2 cut(s) 195, 437
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 6 cut(s) 8, 76, 204, 431, 703, 871
AjiI CACGTC 1 cut(s) 448
AluBI AGCT 8 cut(s) 26, 38, 295, 455, 517, 617, 666, 859
AluI AGCT 8 cut(s) 26, 38, 295, 455, 517, 617, 666, 859
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 1 cut(s) 843
AoxI GGCC 2 cut(s) 370, 754
ApeKI GCWGC 4 cut(s) 23, 35, 594, 663
ApoI RAATTY 1 cut(s) 871
AspLEI GCGC 2 cut(s) 676, 778
AsuHPI GGTGA 4 cut(s) 84, 578, 745, 815
AsuII TTCGAA 2 cut(s) 421, 851
BanII GRGCYC 1 cut(s) 861
BbsI GAAGAC 2 cut(s) 108, 450
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 4 cut(s) 35, 47, 581, 675
BccI CCATC 8 cut(s) 284, 318, 322, 345, 500, 632, 664, 791
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 2 cut(s) 554, 573
BfmI CTRYAG 1 cut(s) 604
BisI GCNGC 4 cut(s) 24, 36, 595, 664
BlsI GCNGC 4 cut(s) 25, 37, 596, 665
BmcAI AGTACT 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 3 cut(s) 2, 567, 685
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 2 cut(s) 108, 450
Bpu14I TTCGAA 2 cut(s) 421, 851
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 3 cut(s) 310, 356, 675
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 835
BseXI GCAGC 4 cut(s) 35, 47, 581, 675
BshFI GGCC 2 cut(s) 372, 756
BsiHKAI GWGCWC 1 cut(s) 861
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 372, 756
Bsp119I TTCGAA 2 cut(s) 421, 851
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 4 cut(s) 89, 344, 835, 900
Bsp19I CCATGG 1 cut(s) 529
BspANI GGCC 2 cut(s) 372, 756
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 926
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 1 cut(s) 843
BspT104I TTCGAA 2 cut(s) 421, 851
BsrI ACTGG 1 cut(s) 835
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 4 cut(s) 89, 344, 835, 900
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 696
BstBI TTCGAA 2 cut(s) 421, 851
BstC8I GCNNGC 2 cut(s) 297, 754
BstDEI CTNAG 2 cut(s) 258, 300
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 3 cut(s) 310, 356, 675
BstHHI GCGC 2 cut(s) 676, 778
BstKTI GATC 4 cut(s) 92, 347, 838, 903
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 4 cut(s) 89, 344, 835, 900
BstMWI GCNNNNNNNGC 5 cut(s) 32, 555, 603, 696, 725
BstSFI CTRYAG 1 cut(s) 604
BstV1I GCAGC 4 cut(s) 35, 47, 581, 675
BstV2I GAAGAC 2 cut(s) 108, 450
BsuRI GGCC 2 cut(s) 372, 756
BtgI CCRYGG 1 cut(s) 529
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 3 cut(s) 310, 356, 675
Cac8I GCNNGC 2 cut(s) 297, 754
CciI TCATGA 1 cut(s) 926
CfoI GCGC 2 cut(s) 676, 778
Csp6I GTAC 2 cut(s) 194, 436
CviAII CATG 7 cut(s) 233, 530, 773, 779, 787, 825, 927
CviQI GTAC 2 cut(s) 194, 436
DdeI CTNAG 2 cut(s) 258, 300
DpnI GATC 4 cut(s) 91, 346, 837, 902
DpnII GATC 4 cut(s) 89, 344, 835, 900
DraI TTTAAA 2 cut(s) 165, 480
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 861
Eco53kI GAGCTC 1 cut(s) 859
Eco57I CTGAAG 2 cut(s) 234, 603
EcoICRI GAGCTC 1 cut(s) 859
EcoRI GAATTC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 655
FatI CATG 7 cut(s) 232, 529, 772, 778, 786, 824, 926
FbaI TGATCA 1 cut(s) 900
Fnu4HI GCNGC 4 cut(s) 24, 36, 595, 664
FokI GGATG 3 cut(s) 297, 363, 682
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 4 cut(s) 24, 36, 595, 664
FspAI RTGCGCAY 1 cut(s) 777
FspBI CTAG 2 cut(s) 554, 573
FspI TGCGCA 1 cut(s) 777
GlaI GCGC 2 cut(s) 675, 777
GluI GCNGC 4 cut(s) 24, 36, 595, 664
HaeIII GGCC 2 cut(s) 372, 756
HhaI GCGC 2 cut(s) 676, 778
Hin1II CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
Hin6I GCGC 2 cut(s) 674, 776
HinP1I GCGC 2 cut(s) 674, 776
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 4 cut(s) 116, 783, 812, 848
HpaI GTTAAC 1 cut(s) 400
HphI GGTGA 4 cut(s) 84, 578, 745, 815
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 6 cut(s) 253, 292, 622, 631, 681, 877
Hpy188III TCNNGA 5 cut(s) 348, 376, 658, 862, 927
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 4 cut(s) 210, 379, 425, 718
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 236, 523, 536, 606, 719
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 555, 603, 696, 725
HpyF3I CTNAG 2 cut(s) 258, 300
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
HspAI GCGC 2 cut(s) 674, 776
Ksp22I TGATCA 1 cut(s) 900
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 4 cut(s) 89, 344, 835, 900
LmnI GCTCC 2 cut(s) 292, 660
LpnPI CCDG 7 cut(s) 224, 333, 652, 676, 716, 738, 816
Lsp1109I GCAGC 4 cut(s) 35, 47, 581, 675
LweI GCATC 3 cut(s) 2, 567, 685
MaeI CTAG 2 cut(s) 554, 573
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 541
MalI GATC 4 cut(s) 91, 346, 837, 902
MboI GATC 4 cut(s) 89, 344, 835, 900
MhlI GDGCHC 1 cut(s) 861
MluCI AATT 3 cut(s) 524, 759, 871
MlyI GAGTC 2 cut(s) 110, 777
MmeI TCCRAC 1 cut(s) 654
MnlI CCTC 8 cut(s) 26, 119, 230, 237, 383, 387, 486, 871
MseI TTAA 3 cut(s) 164, 399, 479
MslI CAYNNNNRTG 2 cut(s) 771, 777
MspA1I CMGCKG 1 cut(s) 666
MwoI GCNNNNNNNGC 5 cut(s) 32, 555, 603, 696, 725
NcoI CCATGG 1 cut(s) 529
NdeII GATC 4 cut(s) 89, 344, 835, 900
NlaIII CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
NsbI TGCGCA 1 cut(s) 777
NspV TTCGAA 2 cut(s) 421, 851
PagI TCATGA 1 cut(s) 926
PceI AGGCCT 1 cut(s) 372
PfeI GAWTC 2 cut(s) 812, 848
PflFI GACNNNGTC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 4 cut(s) 25, 37, 596, 665
PleI GAGTC 2 cut(s) 110, 777
PpsI GAGTC 2 cut(s) 110, 777
Psp124BI GAGCTC 1 cut(s) 861
PstI CTGCAG 1 cut(s) 608
PsyI GACNNNGTC 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 2 cut(s) 195, 437
RsaNI GTAC 2 cut(s) 194, 436
RseI CAYNNNNRTG 2 cut(s) 771, 777
SacI GAGCTC 1 cut(s) 861
SaqAI TTAA 3 cut(s) 164, 399, 479
SatI GCNGC 4 cut(s) 24, 36, 595, 664
Sau3AI GATC 4 cut(s) 89, 344, 835, 900
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 2 cut(s) 110, 777
SduI GDGCHC 1 cut(s) 861
SfaNI GCATC 3 cut(s) 2, 567, 685
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 2 cut(s) 421, 851
SmiMI CAYNNNNRTG 2 cut(s) 771, 777
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 524, 759, 871
SseBI AGGCCT 1 cut(s) 372
SspMI CTAG 2 cut(s) 554, 573
SstI GAGCTC 1 cut(s) 861
StuI AGGCCT 1 cut(s) 372
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 421, 851, 915
TasI AATT 3 cut(s) 524, 759, 871
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 2 cut(s) 812, 848
Tru1I TTAA 3 cut(s) 164, 399, 479
Tru9I TTAA 3 cut(s) 164, 399, 479
TseI GCWGC 4 cut(s) 23, 35, 594, 663
TspDTI ATGAA 3 cut(s) 192, 761, 915
Tth111I GACNNNGTC 1 cut(s) 646
Van91I CCANNNNNTGG 1 cut(s) 320
XapI RAATTY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 2 cut(s) 554, 573
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.