Rh3DG205800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017328
Physical Location & Seq
Reverse (-)
18759182 .. 18760102
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG205800.1

Sequence Viewer

Length: 921 bp
ATGGTTGAAAGGTGCCTTATAGCAGCTTCTTTGGCAGCTTTGGTTTGCCACCCAAGTTCCACCATAAAATGCTTCAAACCAAAGCCAAGATCCCCAGAAGAAGACAACCTCAAAGACTCAAAACGACACTACTCGTCTCCACCAAAAGACCAAAAACGACTTTTCAAGGAAGAAGAAGTAGTAGTACTGCCTTCAAAACCCCAGAAAAACCTCCATACCTATCATGCAAGTAGTTCTTCTTCAGAACGTAAGAAGAAGAAGAAACCCATCAAGGAGTTTTCGGAGCTTGTTGAGAAAGACCGCCCATCAGTTGGGATTGTTGAGAGTATTGTGAGATCAGGATGGGTTAGTAGTGACGTAGGCCTCAAGATTGAGAAGGTGTTGAGGGTGAATCATAGTAAAAATGTGCTTCGAAGTTTCGAAGAGTACAGAGAAGACGTGAAAGCTACCCACAAAAAGGGTAGGATTTTAAAGAAGATAGAGAGGTTGGTGGTTGATGGGAATGAGCTTCTGCAATTCCATGGTGCCACAGTTGCTTGCTCTCTAGGCATCAATGGGGACACTAGAATTTGTAAAATGAAATGCTGCCAAGTCTGCAGAATGATGGCTTCAGAGTTTTCAGGCAATGATGGGACAGTGTCGTTTTTCGGGACCAGCTGGAGGGCGCATGAGAAGGTGAACAGGGAGTGCTTGAAGAAAATGGCGTGCGCAAGGAAGGCTATGGTGATATGTAGAGTGATTGCAGGTCGAATTGCTCATTTTCATGCACATGGACTCATGGATAATGATGGTGGTGAGTTTGATTCTGTGATGGCATGGACTGGGGATCAGTTTAGCGATTCAAGAGAGCTCTTGATTTTGAATTCGGAGGCTGTTCTTCCTTGCTTTGTGATCATATACAAGGTCGAAAAGCCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.48

Weight (kDa)

9.29

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 709
Acc36I ACCTGC 1 cut(s) 734
AccB1I GGYRCC 2 cut(s) 12, 524
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 1 cut(s) 301
AclWI GGATC 2 cut(s) 84, 834
AcsI RAATTY 2 cut(s) 567, 862
AcuI CTGAAG 2 cut(s) 225, 594
AfaI GTAC 2 cut(s) 186, 428
AfiI CCNNNNNNNGG 3 cut(s) 311, 457, 660
AgsI TTSAA 7 cut(s) 8, 76, 166, 195, 694, 843, 862
AjiI CACGTC 1 cut(s) 439
AluBI AGCT 7 cut(s) 26, 38, 286, 446, 508, 657, 850
AluI AGCT 7 cut(s) 26, 38, 286, 446, 508, 657, 850
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 84, 834
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 3 cut(s) 23, 35, 585
ApoI RAATTY 2 cut(s) 567, 862
AspLEI GCGC 2 cut(s) 667, 710
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 4 cut(s) 400, 688, 736, 806
AsuII TTCGAA 2 cut(s) 412, 420
AvaII GGWCC 1 cut(s) 651
BanI GGYRCC 2 cut(s) 12, 524
BanII GRGCYC 1 cut(s) 852
BarI GAAGNNNNNNTAC 4 cut(s) 168, 200, 223, 255
BbsI GAAGAC 2 cut(s) 108, 441
Bbv12I GWGCWC 1 cut(s) 852
BbvI GCAGC 3 cut(s) 35, 47, 572
BccI CCATC 8 cut(s) 275, 313, 336, 491, 598, 623, 782, 805
BclI TGATCA 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 545, 564
BfmI CTRYAG 1 cut(s) 595
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 3 cut(s) 24, 36, 586
BlsI GCNGC 3 cut(s) 25, 37, 587
BmcAI AGTACT 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 651
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 14, 526, 652
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 831
BpiI GAAGAC 2 cut(s) 108, 441
BpmI CTGGAG 1 cut(s) 679
Bpu14I TTCGAA 2 cut(s) 412, 420
BpuEI CTTGAG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 520
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 457, 660
Bse1I ACTGG 1 cut(s) 826
Bse3DI GCAATG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 311, 457, 660
BseMI GCAATG 1 cut(s) 631
BseNI ACTGG 1 cut(s) 826
BseXI GCAGC 3 cut(s) 35, 47, 572
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 2 cut(s) 12, 524
BsiHKAI GWGCWC 1 cut(s) 852
BslFI GGGAC 3 cut(s) 572, 646, 664
BslI CCNNNNNNNGG 3 cut(s) 311, 457, 660
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 572, 646, 664
BsnI GGCC 1 cut(s) 363
Bsp119I TTCGAA 2 cut(s) 412, 420
Bsp1286I GDGCHC 1 cut(s) 852
Bsp143I GATC 4 cut(s) 89, 335, 826, 891
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 363
BspHI TCATGA 1 cut(s) 917
BspLI GGNNCC 3 cut(s) 14, 526, 652
BspMAI CTGCAG 1 cut(s) 599
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 2 cut(s) 84, 834
BspT104I TTCGAA 2 cut(s) 412, 420
BspT107I GGYRCC 2 cut(s) 12, 524
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 1 cut(s) 826
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 4 cut(s) 89, 335, 826, 891
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 532, 637
Bst6I CTCTTC 1 cut(s) 417
BstBI TTCGAA 2 cut(s) 412, 420
BstC8I GCNNGC 2 cut(s) 538, 706
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 667, 710
BstKTI GATC 4 cut(s) 92, 338, 829, 894
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 89, 335, 826, 891
BstMWI GCNNNNNNNGC 5 cut(s) 32, 533, 546, 594, 716
BstSFI CTRYAG 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 35, 47, 572
BstV2I GAAGAC 2 cut(s) 108, 441
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 2 cut(s) 538, 706
CciI TCATGA 1 cut(s) 917
CfoI GCGC 2 cut(s) 667, 710
Cfr13I GGNCC 1 cut(s) 651
Csp6I GTAC 2 cut(s) 185, 427
CviAII CATG 8 cut(s) 224, 521, 668, 764, 770, 778, 816, 918
CviQI GTAC 2 cut(s) 185, 427
DpnI GATC 4 cut(s) 91, 337, 828, 893
DpnII GATC 4 cut(s) 89, 335, 826, 891
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 520
Eco147I AGGCCT 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 2 cut(s) 225, 594
EcoICRI GAGCTC 1 cut(s) 850
EcoRI GAATTC 1 cut(s) 862
EcoT14I CCWWGG 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 8 cut(s) 227, 524, 671, 767, 773, 781, 819, 921
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 3 cut(s) 572, 646, 664
FatI CATG 8 cut(s) 223, 520, 667, 763, 769, 777, 815, 917
FbaI TGATCA 1 cut(s) 891
Fnu4HI GCNGC 3 cut(s) 24, 36, 586
FokI GGATG 1 cut(s) 354
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 3 cut(s) 24, 36, 586
FspBI CTAG 2 cut(s) 545, 564
FspI TGCGCA 1 cut(s) 709
GlaI GCGC 2 cut(s) 666, 709
GluI GCNGC 3 cut(s) 24, 36, 586
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 1 cut(s) 363
HhaI GCGC 2 cut(s) 667, 710
Hin1II CATG 8 cut(s) 227, 524, 671, 767, 773, 781, 819, 921
Hin6I GCGC 2 cut(s) 665, 708
HinP1I GCGC 2 cut(s) 665, 708
HinfI GANTC 5 cut(s) 116, 391, 774, 803, 839
HphI GGTGA 4 cut(s) 400, 688, 736, 806
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 4 cut(s) 244, 283, 613, 868
Hpy188III TCNNGA 6 cut(s) 339, 367, 649, 843, 853, 918
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 4 cut(s) 201, 370, 667, 709
HpyCH4III ACNGT 2 cut(s) 532, 637
HpyCH4IV ACGT 3 cut(s) 247, 357, 438
HpyCH4V TGCA 5 cut(s) 227, 514, 597, 743, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 533, 546, 594, 716
HpySE526I ACGT 3 cut(s) 247, 357, 438
Hsp92II CATG 8 cut(s) 227, 524, 671, 767, 773, 781, 819, 921
HspAI GCGC 2 cut(s) 665, 708
Ksp22I TGATCA 1 cut(s) 891
Kzo9I GATC 4 cut(s) 89, 335, 826, 891
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 108, 215, 324, 606, 643, 667, 667, 729, 807
Lsp1109I GCAGC 3 cut(s) 35, 47, 572
LweI GCATC 1 cut(s) 558
MaeI CTAG 2 cut(s) 545, 564
MaeII ACGT 3 cut(s) 247, 357, 438
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 91, 337, 828, 893
MboI GATC 4 cut(s) 89, 335, 826, 891
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 852
MluCI AATT 4 cut(s) 515, 567, 750, 862
MlyI GAGTC 2 cut(s) 110, 768
MnlI CCTC 7 cut(s) 119, 221, 374, 378, 477, 654, 862
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 2 cut(s) 762, 768
MspA1I CMGCKG 1 cut(s) 657
MwoI GCNNNNNNNGC 5 cut(s) 32, 533, 546, 594, 716
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 89, 335, 826, 891
NlaIII CATG 8 cut(s) 227, 524, 671, 767, 773, 781, 819, 921
NlaIV GGNNCC 3 cut(s) 14, 526, 652
NmuCI GTSAC 1 cut(s) 353
NsbI TGCGCA 1 cut(s) 709
NspV TTCGAA 2 cut(s) 412, 420
PagI TCATGA 1 cut(s) 917
PceI AGGCCT 1 cut(s) 363
PfeI GAWTC 3 cut(s) 391, 803, 839
PflFI GACNNNGTC 1 cut(s) 637
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 3 cut(s) 25, 37, 587
PleI GAGTC 2 cut(s) 110, 768
PpsI GAGTC 2 cut(s) 110, 768
Psp124BI GAGCTC 1 cut(s) 852
PspN4I GGNNCC 3 cut(s) 14, 526, 652
PspPI GGNCC 1 cut(s) 651
PstI CTGCAG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 657
RsaI GTAC 2 cut(s) 186, 428
RsaNI GTAC 2 cut(s) 185, 427
RseI CAYNNNNRTG 2 cut(s) 762, 768
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 3 cut(s) 24, 36, 586
Sau3AI GATC 4 cut(s) 89, 335, 826, 891
Sau96I GGNCC 1 cut(s) 651
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 2 cut(s) 110, 768
SduI GDGCHC 1 cut(s) 852
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 595
SfuI TTCGAA 2 cut(s) 412, 420
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 2 cut(s) 762, 768
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 4 cut(s) 515, 567, 750, 862
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 545, 564
SstI GAGCTC 1 cut(s) 852
StuI AGGCCT 1 cut(s) 363
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 532, 637
TaiI ACGT 3 cut(s) 250, 360, 441
TaqI TCGA 4 cut(s) 412, 420, 748, 906
TasI AATT 4 cut(s) 515, 567, 750, 862
TatI WGTACW 2 cut(s) 184, 426
TfiI GAWTC 3 cut(s) 391, 803, 839
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 3 cut(s) 23, 35, 585
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 593, 752, 906
TspRI CASTG 1 cut(s) 642
Tth111I GACNNNGTC 1 cut(s) 637
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 2 cut(s) 567, 862
XspI CTAG 2 cut(s) 545, 564
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.