Rroxscaffold_2G00108670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017328
Physical Location & Seq
Reverse (-)
32742595 .. 32753413
10819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108670.1

Sequence Viewer

Length: 672 bp
ATGCTGTACCAGTTCAGCATGCTAGCTTCAATTCTTGCCCATCACCGTTCAAAACCTAGAGTATACATTGGTTGCATGAAATCTGGACCTGTTCTTACTCAAAAACCCAAAACGACTTTCCAAGGAAGAAGAGGGGGAAGAAGTAGTAGTACTGCCTTCAAACCCCAGAAAAACTTCCATACCCATCATGCAAGTAGTTCTTCTTCAGAACGTAAGAAGAAGAAGAAGAAACCCATCAAGGCTGTTTCAGAGCTTATTGAGAAAGACCGCCCATCAGTTGGGTTTGTAGAGAGTATTGTGAGATCAGGATGGGTTAGTAGTGACGTAGGCCTCAAGATTGAGAAGGTGTTGAGGGTGAATCGTAGTAAAAATGTGCTTCGAAGTTTCGAAGAGTACAGAGAAGACATGAAAGCTACCTACAAAAAGGGTGGGATTTTAAAGAAGATAGAGAGGTTGGTGGTTGATGGGAATGAGCTTTTGCAATTCCATGGTGCCACAGTTGCTTGCTCTCTAGGCATCAATGGGGACACTAGAATTTGTAAAATGCAATGCTGCCAAGTCTGCAGAATGATAGCTTCAGAGTTTTCGGGCAATGATGGGACAATGTCATTTTTCGGGACCAGCTGGAGGGCGCATCAGAAGGTGAACTGGGAGTGCTATGGTGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.16

Weight (kDa)

9.94

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 2 cut(s) 189, 561
AfaI GTAC 3 cut(s) 8, 151, 395
AfiI CCNNNNNNNGG 2 cut(s) 278, 627
AgsI TTSAA 3 cut(s) 30, 51, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 6 cut(s) 26, 253, 413, 475, 575, 624
AluI AGCT 6 cut(s) 26, 253, 413, 475, 575, 624
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 552
ApoI RAATTY 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 2 cut(s) 86, 618
AsuHPI GGTGA 3 cut(s) 35, 367, 655
AsuII TTCGAA 2 cut(s) 379, 387
AsuNHI GCTAGC 1 cut(s) 22
AvaII GGWCC 2 cut(s) 86, 618
BanI GGYRCC 1 cut(s) 491
BarI GAAGNNNNNNTAC 4 cut(s) 133, 165, 187, 219
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 539
BccI CCATC 7 cut(s) 48, 192, 242, 280, 303, 458, 590
BfaI CTAG 4 cut(s) 23, 57, 512, 531
BfmI CTRYAG 1 cut(s) 562
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
BmcAI AGTACT 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 86, 618
BmgT120I GGNCC 2 cut(s) 86, 618
BmiI GGNNCC 2 cut(s) 493, 619
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 2 cut(s) 525, 643
BmtI GCTAGC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 646
Bpu14I TTCGAA 2 cut(s) 379, 387
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 121, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 627
Bse1I ACTGG 2 cut(s) 10, 653
Bse3DI GCAATG 2 cut(s) 554, 598
BseDI CCNNGG 2 cut(s) 121, 487
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 278, 627
BseMI GCAATG 2 cut(s) 554, 598
BseNI ACTGG 2 cut(s) 10, 653
BseXI GCAGC 1 cut(s) 539
BshFI GGCC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 491
BslFI GGGAC 3 cut(s) 539, 613, 631
BslI CCNNNNNNNGG 2 cut(s) 278, 627
BsmFI GGGAC 3 cut(s) 539, 613, 631
BsnI GGCC 1 cut(s) 330
Bsp119I TTCGAA 2 cut(s) 379, 387
Bsp143I GATC 1 cut(s) 302
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 493, 619
BspMAI CTGCAG 1 cut(s) 566
BspOI GCTAGC 1 cut(s) 26
BspT104I TTCGAA 2 cut(s) 379, 387
BspT107I GGYRCC 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 554, 598
BsrI ACTGG 2 cut(s) 10, 653
BssECI CCNNGG 2 cut(s) 121, 487
BssMI GATC 1 cut(s) 302
BssNAI GTATAC 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 121, 487
Bst1107I GTATAC 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 47, 499
Bst6I CTCTTC 2 cut(s) 124, 384
BstBI TTCGAA 2 cut(s) 379, 387
BstC8I GCNNGC 3 cut(s) 20, 24, 505
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 1 cut(s) 305
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 3 cut(s) 500, 513, 561
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 562
BstV1I GCAGC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 408
BstZ17I GTATAC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 20, 24, 505
CfoI GCGC 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 86, 618
Csp6I GTAC 3 cut(s) 7, 150, 394
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 5 cut(s) 19, 76, 188, 406, 488
CviJI RGCY 8 cut(s) 26, 242, 253, 330, 413, 475, 575, 624
CviKI_1 RGCY 8 cut(s) 26, 242, 253, 330, 413, 475, 575, 624
CviQI GTAC 3 cut(s) 7, 150, 394
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 124, 384
EarI CTCTTC 2 cut(s) 124, 384
Eco130I CCWWGG 2 cut(s) 121, 487
Eco147I AGGCCT 1 cut(s) 330
Eco47I GGWCC 2 cut(s) 86, 618
Eco57I CTGAAG 2 cut(s) 189, 561
EcoT14I CCWWGG 2 cut(s) 121, 487
ErhI CCWWGG 2 cut(s) 121, 487
FaeI CATG 5 cut(s) 22, 79, 191, 409, 491
FaiI YATR 9 cut(s) 20, 64, 77, 180, 189, 407, 489, 660, 668
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FaqI GGGAC 3 cut(s) 539, 613, 631
FatI CATG 5 cut(s) 18, 75, 187, 405, 487
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 4 cut(s) 23, 57, 512, 531
GlaI GCGC 1 cut(s) 633
GluI GCNGC 1 cut(s) 553
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 1 cut(s) 330
HhaI GCGC 1 cut(s) 634
Hin1II CATG 5 cut(s) 22, 79, 191, 409, 491
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HinfI GANTC 1 cut(s) 358
HphI GGTGA 3 cut(s) 35, 367, 655
Hpy166II GTNNAC 2 cut(s) 64, 646
Hpy188I TCNGA 4 cut(s) 208, 250, 580, 639
Hpy188III TCNNGA 4 cut(s) 84, 306, 334, 616
Hpy8I GTNNAC 2 cut(s) 64, 646
HpyAV CCTTC 3 cut(s) 166, 337, 634
HpyCH4III ACNGT 2 cut(s) 47, 499
HpyCH4IV ACGT 2 cut(s) 211, 324
HpyCH4V TGCA 5 cut(s) 75, 191, 481, 547, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 513, 561
HpySE526I ACGT 2 cut(s) 211, 324
Hsp92II CATG 5 cut(s) 22, 79, 191, 409, 491
HspAI GCGC 1 cut(s) 632
Kzo9I GATC 1 cut(s) 302
LpnPI CCDG 8 cut(s) 23, 69, 102, 179, 291, 610, 634, 634
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 2 cut(s) 525, 643
MaeI CTAG 4 cut(s) 23, 57, 512, 531
MaeII ACGT 2 cut(s) 211, 324
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MluCI AATT 3 cut(s) 30, 482, 534
MnlI CCTC 5 cut(s) 125, 341, 345, 444, 621
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 624
MwoI GCNNNNNNNGC 3 cut(s) 500, 513, 561
NcoI CCATGG 1 cut(s) 487
NdeII GATC 1 cut(s) 302
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 5 cut(s) 22, 79, 191, 409, 491
NlaIV GGNNCC 2 cut(s) 493, 619
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 2 cut(s) 379, 387
PaeI GCATGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 358
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 554
PspN4I GGNNCC 2 cut(s) 493, 619
PspPI GGNCC 2 cut(s) 86, 618
PstI CTGCAG 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 624
RsaI GTAC 3 cut(s) 8, 151, 395
RsaNI GTAC 3 cut(s) 7, 150, 394
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 2 cut(s) 86, 618
ScaI AGTACT 1 cut(s) 151
SfaNI GCATC 2 cut(s) 525, 643
SfcI CTRYAG 1 cut(s) 562
SfuI TTCGAA 2 cut(s) 379, 387
SinI GGWCC 2 cut(s) 86, 618
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 22
Sse9I AATT 3 cut(s) 30, 482, 534
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 1 cut(s) 268
SspMI CTAG 4 cut(s) 23, 57, 512, 531
StuI AGGCCT 1 cut(s) 330
StyI CCWWGG 2 cut(s) 121, 487
TaaI ACNGT 2 cut(s) 47, 499
TaiI ACGT 2 cut(s) 214, 327
TaqI TCGA 2 cut(s) 379, 387
TasI AATT 3 cut(s) 30, 482, 534
TatI WGTACW 2 cut(s) 149, 393
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 552
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 92, 422
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 86, 618
XapI RAATTY 1 cut(s) 534
XceI RCATGY 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 4 cut(s) 23, 57, 512, 531
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.