Rmu_sc0001639.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001639.1
OG0017328
Physical Location & Seq
Reverse (-)
68623 .. 69540
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001639.1_g000016.1.cds

Sequence Viewer

Length: 918 bp
atggttgaaaggtgtcttatagcagcttctttggcagctttggtttgccacccaagttccaccataaaatgcttcaaacccaagccaagatccccagaagaagacagcctcaaagactcaaaacgacactactcgtctccaccaaaagaccaaaaacgacttttcaaggaagaagtagtagtactgccttcaaaaccccagaaaaacctccatacctatcatgcaagtagttcttcttcagaacgtaagaagaagaagaaacccatcaaggcgttttcggagcttgttgagaaagaccgcccatcagttgggattgttgagagtattgtgagatcaggatgggttagtagtgacgtaggcctcaagattgagaaggtgttgagggtgaatcatagtaaaaatgtgcttcgaagtttcgaagagtacagagaagacgtgaaagctacccacaaaaagggtaggattttaaagaagatagagagattggtggttgatgggaatgagcttctgcaattccatggtgccacagttgcttgctctctaggcatcaatggggacactagaatttgtaaaatgaaatgctgccaagtctgcagaatgataacttcagggttttcaggcaatgatgggacaatgtcgtttttcgggaccagctggagggcgcatcagaaggtgaacagggagtgcttgaagaaaagggtgtgtgcaaggaaggctatggtgatatgtagagtgatttcaggtcgaattgctcattttcatgcacatggactcatggataatgatggtggtgagtttgattctgtgatggcatggactggggatcagtttagcgattcaagagagctcttgattttgaattcggaggctgttcttccttgctttgtgatcatatacaaggtcgaaaagccttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.3

Weight (kDa)

9.54

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 84, 831
AcsI RAATTY 2 cut(s) 564, 859
AcuI CTGAAG 2 cut(s) 222, 591
AfaI GTAC 2 cut(s) 183, 425
AfiI CCNNNNNNNGG 3 cut(s) 308, 454, 657
AgsI TTSAA 7 cut(s) 8, 76, 166, 192, 691, 840, 859
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 7 cut(s) 26, 38, 283, 443, 505, 654, 847
AluI AGCT 7 cut(s) 26, 38, 283, 443, 505, 654, 847
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 84, 831
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 3 cut(s) 23, 35, 582
ApoI RAATTY 2 cut(s) 564, 859
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 648
AsuHPI GGTGA 4 cut(s) 397, 685, 733, 803
AsuII TTCGAA 2 cut(s) 409, 417
AvaII GGWCC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 849
BarI GAAGNNNNNNTAC 4 cut(s) 165, 197, 220, 252
BbsI GAAGAC 2 cut(s) 108, 438
Bbv12I GWGCWC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 35, 47, 569
BccI CCATC 7 cut(s) 272, 310, 333, 488, 620, 779, 802
BclI TGATCA 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 542, 561
BfmI CTRYAG 1 cut(s) 592
BisI GCNGC 3 cut(s) 24, 36, 583
BlsI GCNGC 3 cut(s) 25, 37, 584
BmcAI AGTACT 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 648
BmiI GGNNCC 2 cut(s) 523, 649
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 2 cut(s) 555, 673
BmuI ACTGGG 1 cut(s) 828
BpiI GAAGAC 2 cut(s) 108, 438
BpmI CTGGAG 1 cut(s) 676
Bpu14I TTCGAA 2 cut(s) 409, 417
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 517
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 454, 657
Bse1I ACTGG 1 cut(s) 823
Bse3DI GCAATG 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 308, 454, 657
BseMI GCAATG 1 cut(s) 628
BseNI ACTGG 1 cut(s) 823
BseXI GCAGC 3 cut(s) 35, 47, 569
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 849
BslFI GGGAC 3 cut(s) 569, 643, 661
BslI CCNNNNNNNGG 3 cut(s) 308, 454, 657
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 569, 643, 661
BsnI GGCC 1 cut(s) 360
Bsp119I TTCGAA 2 cut(s) 409, 417
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 4 cut(s) 89, 332, 823, 888
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 360
BspHI TCATGA 1 cut(s) 914
BspLI GGNNCC 2 cut(s) 523, 649
BspMAI CTGCAG 1 cut(s) 596
BspPI GGATC 2 cut(s) 84, 831
BspT104I TTCGAA 2 cut(s) 409, 417
BspT107I GGYRCC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 1 cut(s) 823
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 4 cut(s) 89, 332, 823, 888
BssT1I CCWWGG 1 cut(s) 517
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 414
BstBI TTCGAA 2 cut(s) 409, 417
BstC8I GCNNGC 1 cut(s) 535
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 4 cut(s) 92, 335, 826, 891
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 89, 332, 823, 888
BstMWI GCNNNNNNNGC 5 cut(s) 32, 530, 543, 591, 713
BstSFI CTRYAG 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 35, 47, 569
BstV2I GAAGAC 2 cut(s) 108, 438
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 517
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 914
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 648
Csp6I GTAC 2 cut(s) 182, 424
CviAII CATG 7 cut(s) 221, 518, 761, 767, 775, 813, 915
CviQI GTAC 2 cut(s) 182, 424
DpnI GATC 4 cut(s) 91, 334, 825, 890
DpnII GATC 4 cut(s) 89, 332, 823, 888
DraI TTTAAA 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 517
Eco147I AGGCCT 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 849
Eco47I GGWCC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 2 cut(s) 222, 591
EcoICRI GAGCTC 1 cut(s) 847
EcoRI GAATTC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 517
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 7 cut(s) 224, 521, 764, 770, 778, 816, 918
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 3 cut(s) 569, 643, 661
FatI CATG 7 cut(s) 220, 517, 760, 766, 774, 812, 914
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 24, 36, 583
FokI GGATG 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 3 cut(s) 24, 36, 583
FspBI CTAG 2 cut(s) 542, 561
GlaI GCGC 1 cut(s) 663
GluI GCNGC 3 cut(s) 24, 36, 583
GsuI CTGGAG 1 cut(s) 676
HaeIII GGCC 1 cut(s) 360
HhaI GCGC 1 cut(s) 664
Hin1II CATG 7 cut(s) 224, 521, 764, 770, 778, 816, 918
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HinfI GANTC 5 cut(s) 116, 388, 771, 800, 836
HphI GGTGA 4 cut(s) 397, 685, 733, 803
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 4 cut(s) 241, 280, 669, 865
Hpy188III TCNNGA 6 cut(s) 336, 364, 646, 840, 850, 915
Hpy8I GTNNAC 1 cut(s) 676
HpyAV CCTTC 4 cut(s) 198, 367, 664, 706
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 3 cut(s) 244, 354, 435
HpyCH4V TGCA 5 cut(s) 224, 511, 594, 707, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 530, 543, 591, 713
HpySE526I ACGT 3 cut(s) 244, 354, 435
Hsp92II CATG 7 cut(s) 224, 521, 764, 770, 778, 816, 918
HspAI GCGC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 4 cut(s) 89, 332, 823, 888
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 3 cut(s) 35, 47, 569
LweI GCATC 2 cut(s) 555, 673
MaeI CTAG 2 cut(s) 542, 561
MaeII ACGT 3 cut(s) 244, 354, 435
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 91, 334, 825, 890
MboI GATC 4 cut(s) 89, 332, 823, 888
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 4 cut(s) 512, 564, 747, 859
MlyI GAGTC 2 cut(s) 110, 765
MnlI CCTC 6 cut(s) 119, 218, 371, 375, 651, 859
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 2 cut(s) 759, 765
MspA1I CMGCKG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 32, 530, 543, 591, 713
NcoI CCATGG 1 cut(s) 517
NdeII GATC 4 cut(s) 89, 332, 823, 888
NlaIII CATG 7 cut(s) 224, 521, 764, 770, 778, 816, 918
NlaIV GGNNCC 2 cut(s) 523, 649
NmuCI GTSAC 1 cut(s) 350
NspV TTCGAA 2 cut(s) 409, 417
PagI TCATGA 1 cut(s) 914
PceI AGGCCT 1 cut(s) 360
PfeI GAWTC 3 cut(s) 388, 800, 836
PflFI GACNNNGTC 1 cut(s) 634
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 3 cut(s) 25, 37, 584
PleI GAGTC 2 cut(s) 110, 765
PpsI GAGTC 2 cut(s) 110, 765
Psp124BI GAGCTC 1 cut(s) 849
PspN4I GGNNCC 2 cut(s) 523, 649
PspPI GGNCC 1 cut(s) 648
PstI CTGCAG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 654
RsaI GTAC 2 cut(s) 183, 425
RsaNI GTAC 2 cut(s) 182, 424
RseI CAYNNNNRTG 2 cut(s) 759, 765
SacI GAGCTC 1 cut(s) 849
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 3 cut(s) 24, 36, 583
Sau3AI GATC 4 cut(s) 89, 332, 823, 888
Sau96I GGNCC 1 cut(s) 648
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 2 cut(s) 110, 765
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 2 cut(s) 555, 673
SfcI CTRYAG 1 cut(s) 592
SfuI TTCGAA 2 cut(s) 409, 417
SinI GGWCC 1 cut(s) 648
SmiMI CAYNNNNRTG 2 cut(s) 759, 765
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 512, 564, 747, 859
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 542, 561
SstI GAGCTC 1 cut(s) 849
StuI AGGCCT 1 cut(s) 360
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 3 cut(s) 247, 357, 438
TaqI TCGA 4 cut(s) 409, 417, 745, 903
TasI AATT 4 cut(s) 512, 564, 747, 859
TatI WGTACW 2 cut(s) 181, 423
TfiI GAWTC 3 cut(s) 388, 800, 836
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 3 cut(s) 23, 35, 582
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 590, 749, 903
Tth111I GACNNNGTC 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 2 cut(s) 564, 859
XspI CTAG 2 cut(s) 542, 561
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.