Rroxscaffold_6G00412500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017328
Physical Location & Seq
Reverse (-)
35040054 .. 35040980
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412500.1

Sequence Viewer

Length: 927 bp
ATGATTGAAAGGTGCCTTATAGCAGCTTCTTTGGCAGCTTTGGTTTGCCACCCCAGTTCCACCATAAAATGCTTCAAACCCAAGCCAAGATCCCCAGAAGAAGACAACCTCAAAGACTCAAAACGACACTACTCGTCTCCACCAAAAGACCAAAAACGACTTTTCAAGGAAGAGGAGGAAGAAGAAGTAGTAGTACTGCCTTCAAAACCCCCGAAAAACCTCCATACCTATCATGCAAGTAGTTCTTCAGAACGTAAGAAGAAGAAGAAACCCATCAAGGCGTTTTCGGAGCTTGTTGAGAAAGACCGCCCATCAGTTGGGATTGTGGAGAGTATTGTGAGATCCGGATGGGTTAGTAGTGACGAAGGCCTCAAGATTGAGAAGGTGTTGAGGGTGAATCATAGTAAAAATGTGCTTCGAAGTTTCGAAGAGTACAGAGAAGACGTTAAAGCTACCTACAAAAAGGGTAGGATTTTAAAGAAGATAGAGAGGTTGGTGGTTGATGGGAATGAGCTTTTGCAATTCCATGGTGCCACAGTTGCTTGCTCTCTAGGCATCAATGGGGACACTAGAATTTGCAAAATGAAATGCTGCCAAGTCTGCAGAATGATAGCTTCAGAGTTTTCGGGCAATGATGGGACAATGTCGTTTTTCGGGACCAGCTGGAGGGCGCATCAGAAGGTGAACAGGGAGTGCTTGAAGAAAAGGGTGTGTGCAAGGAAGGCTATGGTGATATGTAGAGTGATTGCAGGTCGAATTGCTCATTTCCATGCACATGGACTCATGGATAATGATGGTGGTGAGTTTGATTCTGTGATGGCATGGACTGGGGATCAGTTTAGCGATTCAAAAGAGCTCTTGATTTTGAATTCGGAGGCTGTTCTTCCTTGCTTTGTGATCATATACAAGGTCGAAAAGCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.81

Weight (kDa)

9.22

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 2 cut(s) 12, 530
AccB7I CCANNNNNTGG 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 1 cut(s) 307
AclWI GGATC 3 cut(s) 84, 336, 840
AcsI RAATTY 2 cut(s) 573, 868
AcuI CTGAAG 2 cut(s) 231, 600
AfaI GTAC 2 cut(s) 195, 434
AfiI CCNNNNNNNGG 2 cut(s) 317, 666
AgsI TTSAA 7 cut(s) 8, 76, 166, 204, 700, 849, 868
AluBI AGCT 8 cut(s) 26, 38, 292, 452, 514, 614, 663, 856
AluI AGCT 8 cut(s) 26, 38, 292, 452, 514, 614, 663, 856
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 3 cut(s) 84, 336, 840
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 23, 35, 591
ApoI RAATTY 2 cut(s) 573, 868
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 657
AsuHPI GGTGA 4 cut(s) 406, 694, 742, 812
AsuII TTCGAA 2 cut(s) 418, 426
AvaII GGWCC 1 cut(s) 657
BanI GGYRCC 2 cut(s) 12, 530
BanII GRGCYC 1 cut(s) 858
BarI GAAGNNNNNNTAC 2 cut(s) 177, 209
BbsI GAAGAC 2 cut(s) 108, 447
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 3 cut(s) 35, 47, 578
BccI CCATC 7 cut(s) 281, 319, 342, 497, 629, 788, 811
BclI TGATCA 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 551, 570
BfmI CTRYAG 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 3 cut(s) 24, 36, 592
BlsI GCNGC 3 cut(s) 25, 37, 593
BmcAI AGTACT 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 3 cut(s) 14, 532, 658
BmrI ACTGGG 2 cut(s) 48, 837
BmsI GCATC 2 cut(s) 564, 682
BmuI ACTGGG 2 cut(s) 48, 837
BpiI GAAGAC 2 cut(s) 108, 447
BpmI CTGGAG 1 cut(s) 685
Bpu14I TTCGAA 2 cut(s) 418, 426
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 666
Bse1I ACTGG 2 cut(s) 54, 832
Bse3DI GCAATG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 317, 666
BseMI GCAATG 1 cut(s) 637
BseNI ACTGG 2 cut(s) 54, 832
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 35, 47, 578
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 12, 530
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 3 cut(s) 578, 652, 670
BslI CCNNNNNNNGG 2 cut(s) 317, 666
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 578, 652, 670
BsnI GGCC 1 cut(s) 369
Bsp119I TTCGAA 2 cut(s) 418, 426
Bsp1286I GDGCHC 1 cut(s) 858
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 4 cut(s) 89, 341, 832, 897
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 344
BspLI GGNNCC 3 cut(s) 14, 532, 658
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 3 cut(s) 84, 336, 840
BspT104I TTCGAA 2 cut(s) 418, 426
BspT107I GGYRCC 2 cut(s) 12, 530
BsrDI GCAATG 1 cut(s) 637
BsrI ACTGG 2 cut(s) 54, 832
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 4 cut(s) 89, 341, 832, 897
BssT1I CCWWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 2 cut(s) 165, 423
BstBI TTCGAA 2 cut(s) 418, 426
BstC8I GCNNGC 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 4 cut(s) 92, 344, 835, 900
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 89, 341, 832, 897
BstMWI GCNNNNNNNGC 5 cut(s) 32, 539, 552, 600, 722
BstSFI CTRYAG 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 35, 47, 578
BstV2I GAAGAC 2 cut(s) 108, 447
BstX2I RGATCY 2 cut(s) 89, 341
BstXI CCANNNNNNTGG 1 cut(s) 776
BstYI RGATCY 2 cut(s) 89, 341
BsuRI GGCC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 353
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 1 cut(s) 544
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 657
Csp6I GTAC 2 cut(s) 194, 433
CviAII CATG 7 cut(s) 233, 527, 770, 776, 784, 822, 924
CviQI GTAC 2 cut(s) 194, 433
DpnI GATC 4 cut(s) 91, 343, 834, 899
DpnII GATC 4 cut(s) 89, 341, 832, 897
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 165, 423
EarI CTCTTC 2 cut(s) 165, 423
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 526
Eco147I AGGCCT 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 2 cut(s) 231, 600
EcoICRI GAGCTC 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 858
ErhI CCWWGG 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 7 cut(s) 236, 530, 773, 779, 787, 825, 927
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 3 cut(s) 578, 652, 670
FatI CATG 7 cut(s) 232, 526, 769, 775, 783, 821, 923
FbaI TGATCA 1 cut(s) 897
Fnu4HI GCNGC 3 cut(s) 24, 36, 592
FokI GGATG 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 24, 36, 592
FspBI CTAG 2 cut(s) 551, 570
GlaI GCGC 1 cut(s) 672
GluI GCNGC 3 cut(s) 24, 36, 592
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 1 cut(s) 369
HapII CCGG 1 cut(s) 345
HhaI GCGC 1 cut(s) 673
Hin1II CATG 7 cut(s) 236, 530, 773, 779, 787, 825, 927
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HinfI GANTC 5 cut(s) 116, 397, 780, 809, 845
HpaII CCGG 1 cut(s) 345
HphI GGTGA 4 cut(s) 406, 694, 742, 812
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 5 cut(s) 250, 289, 619, 678, 874
Hpy188III TCNNGA 4 cut(s) 345, 373, 655, 859
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 5 cut(s) 210, 359, 376, 673, 715
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 2 cut(s) 253, 444
HpyCH4V TGCA 7 cut(s) 236, 520, 579, 603, 716, 749, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 539, 552, 600, 722
HpySE526I ACGT 2 cut(s) 253, 444
Hsp92II CATG 7 cut(s) 236, 530, 773, 779, 787, 825, 927
HspAI GCGC 1 cut(s) 671
Kpn2I TCCGGA 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 897
Kzo9I GATC 4 cut(s) 89, 341, 832, 897
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 67, 108, 358, 649, 673, 673, 735, 813
Lsp1109I GCAGC 3 cut(s) 35, 47, 578
LweI GCATC 2 cut(s) 564, 682
MaeI CTAG 2 cut(s) 551, 570
MaeII ACGT 2 cut(s) 253, 444
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 91, 343, 834, 899
MboI GATC 4 cut(s) 89, 341, 832, 897
MflI RGATCY 2 cut(s) 89, 341
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 4 cut(s) 521, 573, 756, 868
MlyI GAGTC 2 cut(s) 110, 774
MnlI CCTC 9 cut(s) 119, 166, 169, 230, 380, 384, 483, 660, 868
MroI TCCGGA 1 cut(s) 344
MseI TTAA 2 cut(s) 447, 476
MslI CAYNNNNRTG 2 cut(s) 768, 774
MspA1I CMGCKG 1 cut(s) 663
MspI CCGG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 32, 539, 552, 600, 722
NcoI CCATGG 1 cut(s) 526
NdeII GATC 4 cut(s) 89, 341, 832, 897
NlaIII CATG 7 cut(s) 236, 530, 773, 779, 787, 825, 927
NlaIV GGNNCC 3 cut(s) 14, 532, 658
NmuCI GTSAC 1 cut(s) 359
NspV TTCGAA 2 cut(s) 418, 426
PceI AGGCCT 1 cut(s) 369
PfeI GAWTC 3 cut(s) 397, 809, 845
PflFI GACNNNGTC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 3 cut(s) 25, 37, 593
PleI GAGTC 2 cut(s) 110, 774
PpsI GAGTC 2 cut(s) 110, 774
Psp124BI GAGCTC 1 cut(s) 858
PspN4I GGNNCC 3 cut(s) 14, 532, 658
PspPI GGNCC 1 cut(s) 657
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 2 cut(s) 89, 341
PsyI GACNNNGTC 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 663
RsaI GTAC 2 cut(s) 195, 434
RsaNI GTAC 2 cut(s) 194, 433
RseI CAYNNNNRTG 2 cut(s) 768, 774
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 2 cut(s) 447, 476
SatI GCNGC 3 cut(s) 24, 36, 592
Sau3AI GATC 4 cut(s) 89, 341, 832, 897
Sau96I GGNCC 1 cut(s) 657
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 2 cut(s) 110, 774
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 2 cut(s) 564, 682
SfcI CTRYAG 1 cut(s) 601
SfuI TTCGAA 2 cut(s) 418, 426
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 768, 774
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 521, 573, 756, 868
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 1 cut(s) 307
SspMI CTAG 2 cut(s) 551, 570
SstI GAGCTC 1 cut(s) 858
StuI AGGCCT 1 cut(s) 369
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 2 cut(s) 256, 447
TaqI TCGA 4 cut(s) 418, 426, 754, 912
TasI AATT 4 cut(s) 521, 573, 756, 868
TatI WGTACW 2 cut(s) 193, 432
TfiI GAWTC 3 cut(s) 397, 809, 845
Tru1I TTAA 2 cut(s) 447, 476
Tru9I TTAA 2 cut(s) 447, 476
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 3 cut(s) 23, 35, 591
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 599
Tth111I GACNNNGTC 1 cut(s) 643
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 657
XapI RAATTY 2 cut(s) 573, 868
XspI CTAG 2 cut(s) 551, 570
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.