Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017328

Physical Location & Seq

Genomic Coordinates Reverse (-)

23982256 .. 23983188

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTGGAAAGATGCCTGATTGCTGCTTCTCTGGCTGCTCTGGTTTGCCATCCCAGCTCCACCATAAAGTGTTTCAAGCCCAAGCCAAGACCCAGATCCCCACAGAAACAAAAACCAGAAGATCCTTCTGCTTCTCCACCAAAGGGTTCAAAACGACATGGTGTTGTAATTGGAAAGGAAGTGCCTTCAAAACCCAAGGAAAAACCATGCCCCAAGGCAGCTTCTTCTTCTTCCTCTGCAAGCAAGTCCAGAAAAAGCACAAAGACAAAAGCTGAAAAACCCATTAACTTGGTCTCGGAGCTTGTTGGAGGGGACCCTTCCATTGGTGTTGTGGAGAGTATTATCCGCTCAGGTTGGGTTAGTGAAGTAGGCCTCAGAATTGAGAAGGTGTTGAGGGTGCACCACAGTTTGGATGTTCTTCATGGTTTTGAAGAGTATAGGAAGACAGTGAAATCCAAGTACGAAAAGGATCGGATTCGTAAGAGGATGGAGAGGTTGGTGGTTGATGGGAATGAGCTTCTGCAATTCCATGGTGCCGCCATTACTTGTTCTTTAGGGATCAATGGTTTCTCAACCATTTGTAAAAAGAAATGCTGCCAAGTTTGCAGGATAATAGCTTCTGGGTTTGACACCGGAGACGGGACTATATCGTTCGTCCACGACAGTGGGAAGGCACATGAGAAGGCGGCCAAGGAATGTTCTGGGAAAGGAGAGTGTGCAAGGAAGGCCATTGTGGTGTGTAGAGTGATTGCAGGGCGCATTGCTCATTATCATGCACATGGGCTCATGGATGAGGAAGAGGGTGAATTTGATTCTGCCATGGAATGGGGGGAGCAATTTAGTAAGCCCAAAAGGCTTGTGGTTTTGAATTCGGAGGCTGTGCTTCCATGCTTTGTAATCATATATAATGTCAAAAATAAAAATCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

33.92

Weight (kDa)

9.44

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15390
malus_domestica	MD04G1104100.v1.1
prunus_persica	Prupe.6G241000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468871
rosa_laevigata	RLG00000024405
rosa_multiflora	Rmu_sc0001639.1_g000016
rosa_roxburghii	Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha	Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana	Rw3G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccB7I	CCANNNNNTGG	2 cut(s)	409, 825
AccBSI	CCGCTC	1 cut(s)	348
AciI	CCGC	3 cut(s)	346, 537, 686
AclWI	GGATC	4 cut(s)	90, 116, 477, 566
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	806, 868
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	5 cut(s)	143, 323, 409, 639, 825
AgsI	TTSAA	5 cut(s)	76, 150, 189, 431, 868
AleI	CACNNNNGTG	1 cut(s)	663
AluBI	AGCT	6 cut(s)	57, 221, 272, 301, 517, 617
AluI	AGCT	6 cut(s)	57, 221, 272, 301, 517, 617
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	298, 630
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	4 cut(s)	90, 116, 477, 566
AoxI	GGCC	3 cut(s)	370, 687, 726
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	4 cut(s)	23, 35, 218, 594
ApoI	RAATTY	2 cut(s)	806, 868
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	10, 22, 230, 581
BccI	CCATC	3 cut(s)	57, 481, 500
BcoDI	GTCTC	2 cut(s)	298, 630
BglI	GCCNNNNNGGC	1 cut(s)	853
BisI	GCNGC	6 cut(s)	24, 36, 219, 537, 595, 687
BlsI	GCNGC	6 cut(s)	25, 37, 220, 538, 596, 688
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	314, 315, 535
BmsI	GCATC	1 cut(s)	2
BpiI	GAAGAC	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	5 cut(s)	195, 213, 529, 690, 819
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	5 cut(s)	143, 323, 409, 639, 825
Bse3DI	GCAATG	1 cut(s)	759
BseDI	CCNNGG	5 cut(s)	195, 213, 529, 690, 819
BseGI	GGATG	4 cut(s)	49, 418, 492, 796
BseLI	CCNNNNNNNGG	5 cut(s)	143, 323, 409, 639, 825
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	363, 388
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	4 cut(s)	10, 22, 230, 581
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	3 cut(s)	372, 689, 728
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	2 cut(s)	326, 655
BslI	CCNNNNNNNGG	5 cut(s)	143, 323, 409, 639, 825
BsmAI	GTCTC	2 cut(s)	298, 630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	326, 655
BsnI	GGCC	3 cut(s)	372, 689, 728
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	402, 786
Bsp143I	GATC	4 cut(s)	95, 121, 469, 558
Bsp19I	CCATGG	2 cut(s)	529, 819
BspACI	CCGC	3 cut(s)	346, 537, 686
BspANI	GGCC	3 cut(s)	372, 689, 728
BspCNI	CTCAG	2 cut(s)	362, 387
BspLI	GGNNCC	3 cut(s)	314, 315, 535
BspPI	GGATC	4 cut(s)	90, 116, 477, 566
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	298
BsrBI	CCGCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	759
BssECI	CCNNGG	5 cut(s)	195, 213, 529, 690, 819
BssMI	GATC	4 cut(s)	95, 121, 469, 558
BssT1I	CCWWGG	5 cut(s)	195, 213, 529, 690, 819
Bst4CI	ACNGT	3 cut(s)	407, 448, 665
Bst6I	CTCTTC	2 cut(s)	426, 792
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	349, 374
BstDSI	CCRYGG	2 cut(s)	529, 819
BstF5I	GGATG	4 cut(s)	49, 418, 492, 796
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	4 cut(s)	98, 124, 472, 561
BstMAI	GTCTC	2 cut(s)	298, 630
BstMBI	GATC	4 cut(s)	95, 121, 469, 558
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 54, 603, 725, 853
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	10, 22, 230, 581
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	2 cut(s)	95, 121
BstXI	CCANNNNNNTGG	2 cut(s)	289, 665
BstYI	RGATCY	2 cut(s)	95, 121
BsuRI	GGCC	3 cut(s)	372, 689, 728
BtgI	CCRYGG	2 cut(s)	529, 819
BtsCI	GGATG	4 cut(s)	49, 418, 492, 796
BtsIMutI	CAGTG	2 cut(s)	453, 670
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	759
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	460
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	349, 374
DpnI	GATC	4 cut(s)	97, 123, 471, 560
DpnII	GATC	4 cut(s)	95, 121, 469, 558
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	2 cut(s)	426, 792
EarI	CTCTTC	2 cut(s)	426, 792
Eco130I	CCWWGG	5 cut(s)	195, 213, 529, 690, 819
Eco147I	AGGCCT	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	868
EcoT14I	CCWWGG	5 cut(s)	195, 213, 529, 690, 819
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	5 cut(s)	195, 213, 529, 690, 819
Esp3I	CGTCTC	1 cut(s)	630
FaqI	GGGAC	2 cut(s)	326, 655
Fnu4HI	GCNGC	6 cut(s)	24, 36, 219, 537, 595, 687
FokI	GGATG	4 cut(s)	36, 425, 499, 803
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	6 cut(s)	24, 36, 219, 537, 595, 687
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	6 cut(s)	24, 36, 219, 537, 595, 687
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	372, 689, 728
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	1 cut(s)	759
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HinfI	GANTC	2 cut(s)	475, 812
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	2 cut(s)	400, 658
Hpy188I	TCNGA	4 cut(s)	298, 377, 474, 874
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	400, 658
HpyAV	CCTTC	7 cut(s)	135, 195, 327, 379, 664, 676, 718
HpyCH4III	ACNGT	3 cut(s)	407, 448, 665
HpyCH4V	TGCA	7 cut(s)	239, 400, 523, 606, 719, 752, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 54, 603, 725, 853
HpyF3I	CTNAG	2 cut(s)	349, 374
HspAI	GCGC	1 cut(s)	757
KflI	GGGWCCC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	95, 121, 469, 558
LmnI	GCTCC	3 cut(s)	62, 298, 832
Lsp1109I	GCAGC	4 cut(s)	10, 22, 230, 581
LweI	GCATC	1 cut(s)	2
MalI	GATC	4 cut(s)	97, 123, 471, 560
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	4 cut(s)	95, 121, 469, 558
MboII	GAAGA	9 cut(s)	131, 216, 219, 222, 410, 443, 454, 809, 917
MflI	RGATCY	2 cut(s)	95, 121
MhlI	GDGCHC	2 cut(s)	402, 786
MluCI	AATT	6 cut(s)	168, 378, 524, 806, 836, 868
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	9 cut(s)	244, 302, 383, 387, 477, 486, 787, 793, 868
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	4 cut(s)	663, 734, 771, 777
MspI	CCGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	5 cut(s)	32, 54, 603, 725, 853
NcoI	CCATGG	2 cut(s)	529, 819
NdeII	GATC	4 cut(s)	95, 121, 469, 558
NlaIV	GGNNCC	3 cut(s)	314, 315, 535
OliI	CACNNNNGTG	1 cut(s)	663
PceI	AGGCCT	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	475, 812
PflMI	CCANNNNNTGG	2 cut(s)	409, 825
PkrI	GCNGC	6 cut(s)	25, 37, 220, 538, 596, 688
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	314, 315, 535
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	95, 121
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	4 cut(s)	663, 734, 771, 777
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	6 cut(s)	24, 36, 219, 537, 595, 687
Sau3AI	GATC	4 cut(s)	95, 121, 469, 558
Sau96I	GGNCC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	402, 786
SetI	ASST	9 cut(s)	59, 223, 274, 303, 355, 390, 497, 519, 619
SfaNI	GCATC	1 cut(s)	2
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	4 cut(s)	663, 734, 771, 777
Sse9I	AATT	6 cut(s)	168, 378, 524, 806, 836, 868
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	3 cut(s)	346, 537, 686
StuI	AGGCCT	1 cut(s)	372
StyI	CCWWGG	5 cut(s)	195, 213, 529, 690, 819
TaaI	ACNGT	3 cut(s)	407, 448, 665
TasI	AATT	6 cut(s)	168, 378, 524, 806, 836, 868
TauI	GCSGC	2 cut(s)	539, 689
TfiI	GAWTC	2 cut(s)	475, 812
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	453, 670
TseI	GCWGC	4 cut(s)	23, 35, 218, 594
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	453, 670
Van91I	CCANNNNNTGG	2 cut(s)	409, 825
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	2 cut(s)	806, 868
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.