RLG00000024405

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017328
Physical Location & Seq
Reverse (-)
35526228 .. 35527157
930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024405

Sequence Viewer

Length: 930 bp
ATGTTTGAAAGGTGCCTTATAGCAGCTTCTTTGGCAGCTTTGGTTTGCCACCCAAGTTCCACCATAAAATGCTTCAAACCCAAGCCAAGATCCCCAGAAGAAGACAACCTCAAAGACCCAAAACGACACTACTCGTCTCCACCAAAAGACCAAAAACGACTTTTCAAGGAAGAGGAGGAAGAAGAAGTAGTAATACTGCCTTCAAAACCCCAGAAAAACCTCCATACCTATCATGCAAGTAGTTCTTCTTCAGAACGTAAGAAGAAGAAGAAACCCATCAAGGCGTTTTCGGAGCTAATTGAGAAAGACCGCCCATCAGTTGGGATTGTAGAGAGTATTGTGAGATCAGGATGGGTTAGTAGTGACGTAGGCCTCAAGATTGAGAAGGTGTTGAGGGTGAATCATAGTAAAAATGTGCTTCGAAGTTTCGAAGAGTACAGAGAAGACGTGAAAGCTACCCACAAAAAGGGTAGGATTTTAAAGAAGATAGAGAGGTTGGTGGTTGATGGGAATGAGCTTCTGCAATTCCATGGTGCCACAGTTGCTTGCTCTCTAGGCACCAATGGGGACACTAGAATTTGTAAAATGAAATGCTGCCAAGTCTGCAGAATGATAGCTTCAGAGTTTTCGGGTAATGATGGGACAATGTCGTTTTTCGGGACCAGCTGGATGGCGCATCAGAAGGTGAACAGGGAGTGCTTGAAGAAAAGGGTGTGTGCAAGGAAGGCTATGGTGATATGCAGAGTGATTGCAGGTCGAATTGCTCATTTTCATGCACATGGACTCATGGATAATGATGGTGGTGAGTTTGATTCTGTGATGGCATGGACTGGGGATCAGTTTAGCGATTCAAGAGAGCTCTTGATTTTGAATTCGGAGGCTGTTCTTCCTTGCTTTGTGATCATATACAAGGTCGAAAAGCCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.92

Weight (kDa)

9.23

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 3 cut(s) 12, 533, 557
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 84, 843
AcsI RAATTY 2 cut(s) 576, 871
AcuI CTGAAG 2 cut(s) 234, 603
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 320, 466
AgsI TTSAA 7 cut(s) 8, 76, 166, 204, 703, 852, 871
AjiI CACGTC 1 cut(s) 448
AluBI AGCT 8 cut(s) 26, 38, 295, 455, 517, 617, 666, 859
AluI AGCT 8 cut(s) 26, 38, 295, 455, 517, 617, 666, 859
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 84, 843
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 3 cut(s) 23, 35, 594
ApoI RAATTY 2 cut(s) 576, 871
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 660
AsuHPI GGTGA 4 cut(s) 409, 697, 745, 815
AsuII TTCGAA 2 cut(s) 421, 429
AvaII GGWCC 1 cut(s) 660
BanI GGYRCC 3 cut(s) 12, 533, 557
BanII GRGCYC 1 cut(s) 861
BarI GAAGNNNNNNTAC 4 cut(s) 177, 209, 232, 264
BbsI GAAGAC 2 cut(s) 108, 450
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 3 cut(s) 35, 47, 581
BccI CCATC 8 cut(s) 284, 322, 345, 500, 632, 664, 791, 814
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 554, 573
BfmI CTRYAG 1 cut(s) 604
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 3 cut(s) 24, 36, 595
BlsI GCNGC 3 cut(s) 25, 37, 596
Bme18I GGWCC 1 cut(s) 660
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 660
BmiI GGNNCC 4 cut(s) 14, 535, 559, 661
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 2 cut(s) 108, 450
Bpu14I TTCGAA 2 cut(s) 421, 429
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 466
Bse1I ACTGG 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 2 cut(s) 356, 675
BseLI CCNNNNNNNGG 2 cut(s) 320, 466
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 35, 47, 581
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 3 cut(s) 12, 533, 557
BsiHKAI GWGCWC 1 cut(s) 861
BslFI GGGAC 3 cut(s) 581, 655, 673
BslI CCNNNNNNNGG 2 cut(s) 320, 466
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 581, 655, 673
BsnI GGCC 1 cut(s) 372
Bsp119I TTCGAA 2 cut(s) 421, 429
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 4 cut(s) 89, 344, 835, 900
Bsp19I CCATGG 1 cut(s) 529
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 372
BspHI TCATGA 1 cut(s) 926
BspLI GGNNCC 4 cut(s) 14, 535, 559, 661
BspMAI CTGCAG 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 2 cut(s) 84, 843
BspT104I TTCGAA 2 cut(s) 421, 429
BspT107I GGYRCC 3 cut(s) 12, 533, 557
BsrI ACTGG 1 cut(s) 835
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 4 cut(s) 89, 344, 835, 900
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 2 cut(s) 165, 426
BstBI TTCGAA 2 cut(s) 421, 429
BstC8I GCNNGC 1 cut(s) 547
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 2 cut(s) 356, 675
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 4 cut(s) 92, 347, 838, 903
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 89, 344, 835, 900
BstMWI GCNNNNNNNGC 5 cut(s) 32, 542, 555, 603, 725
BstSFI CTRYAG 1 cut(s) 604
BstV1I GCAGC 3 cut(s) 35, 47, 581
BstV2I GAAGAC 2 cut(s) 108, 450
BstX2I RGATCY 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 529
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 2 cut(s) 356, 675
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 1 cut(s) 926
CfoI GCGC 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 660
Csp6I GTAC 1 cut(s) 436
CviAII CATG 7 cut(s) 233, 530, 773, 779, 787, 825, 927
CviQI GTAC 1 cut(s) 436
DpnI GATC 4 cut(s) 91, 346, 837, 902
DpnII GATC 4 cut(s) 89, 344, 835, 900
DraI TTTAAA 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 165, 426
EarI CTCTTC 2 cut(s) 165, 426
Ecl136II GAGCTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 660
Eco53kI GAGCTC 1 cut(s) 859
Eco57I CTGAAG 2 cut(s) 234, 603
EcoICRI GAGCTC 1 cut(s) 859
EcoRI GAATTC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 3 cut(s) 581, 655, 673
FatI CATG 7 cut(s) 232, 529, 772, 778, 786, 824, 926
FbaI TGATCA 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 24, 36, 595
FokI GGATG 2 cut(s) 363, 682
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 3 cut(s) 24, 36, 595
FspBI CTAG 2 cut(s) 554, 573
GlaI GCGC 1 cut(s) 675
GluI GCNGC 3 cut(s) 24, 36, 595
HaeIII GGCC 1 cut(s) 372
HhaI GCGC 1 cut(s) 676
Hin1II CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HinfI GANTC 4 cut(s) 400, 783, 812, 848
HphI GGTGA 4 cut(s) 409, 697, 745, 815
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 5 cut(s) 253, 292, 622, 681, 877
Hpy188III TCNNGA 6 cut(s) 348, 376, 658, 852, 862, 927
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 210, 379, 676, 718
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 3 cut(s) 256, 366, 447
HpyCH4V TGCA 7 cut(s) 236, 523, 606, 719, 741, 752, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 542, 555, 603, 725
HpySE526I ACGT 3 cut(s) 256, 366, 447
Hsp92II CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
HspAI GCGC 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 4 cut(s) 89, 344, 835, 900
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 108, 224, 333, 652, 676, 676, 738, 816
Lsp1109I GCAGC 3 cut(s) 35, 47, 581
LweI GCATC 1 cut(s) 685
MaeI CTAG 2 cut(s) 554, 573
MaeII ACGT 3 cut(s) 256, 366, 447
MaeIII GTNAC 1 cut(s) 362
MalI GATC 4 cut(s) 91, 346, 837, 902
MboI GATC 4 cut(s) 89, 344, 835, 900
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 861
MluCI AATT 5 cut(s) 297, 524, 576, 759, 871
MlyI GAGTC 1 cut(s) 777
MnlI CCTC 8 cut(s) 119, 166, 169, 230, 383, 387, 486, 871
MseI TTAA 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 771, 777
MspA1I CMGCKG 1 cut(s) 666
MwoI GCNNNNNNNGC 5 cut(s) 32, 542, 555, 603, 725
NcoI CCATGG 1 cut(s) 529
NdeII GATC 4 cut(s) 89, 344, 835, 900
NlaIII CATG 7 cut(s) 236, 533, 776, 782, 790, 828, 930
NlaIV GGNNCC 4 cut(s) 14, 535, 559, 661
NmuCI GTSAC 1 cut(s) 362
NspV TTCGAA 2 cut(s) 421, 429
PagI TCATGA 1 cut(s) 926
PceI AGGCCT 1 cut(s) 372
PfeI GAWTC 3 cut(s) 400, 812, 848
PflFI GACNNNGTC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 3 cut(s) 25, 37, 596
PleI GAGTC 1 cut(s) 777
PpsI GAGTC 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 861
PspN4I GGNNCC 4 cut(s) 14, 535, 559, 661
PspPI GGNCC 1 cut(s) 660
PstI CTGCAG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 771, 777
SacI GAGCTC 1 cut(s) 861
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 3 cut(s) 24, 36, 595
Sau3AI GATC 4 cut(s) 89, 344, 835, 900
Sau96I GGNCC 1 cut(s) 660
SchI GAGTC 1 cut(s) 777
SduI GDGCHC 1 cut(s) 861
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 2 cut(s) 421, 429
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 771, 777
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 5 cut(s) 297, 524, 576, 759, 871
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 1 cut(s) 310
SspMI CTAG 2 cut(s) 554, 573
SstI GAGCTC 1 cut(s) 861
StuI AGGCCT 1 cut(s) 372
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 3 cut(s) 259, 369, 450
TaqI TCGA 4 cut(s) 421, 429, 757, 915
TasI AATT 5 cut(s) 297, 524, 576, 759, 871
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 3 cut(s) 400, 812, 848
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 23, 35, 594
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 3 cut(s) 602, 761, 915
Tth111I GACNNNGTC 1 cut(s) 646
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 660
XapI RAATTY 2 cut(s) 576, 871
XspI CTAG 2 cut(s) 554, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.